View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_high_17 (Length: 508)
Name: NF7347_high_17
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 15 - 502
Target Start/End: Complemental strand, 3815777 - 3815291
Alignment:
| Q |
15 |
atgttccactaagacattgaaatgaaagaaattggaacttcttattttgaatcttatcaaaatttannnnnnncagnnnnnnncaagtgcaagatcacga |
114 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
3815777 |
atgttccactaagacattgaaatgaaagaaattagaacttcttattttgaatcttatcaaaatttatttttt-cagaaaaaaacaagtgcaagatcacga |
3815679 |
T |
|
| Q |
115 |
gatatatagctatattttacaatgacaatattggtaggtagtgacaacacatgccgtacaatagttccttcctccctttgtctcattgaggttaattatc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3815678 |
gatatatagctatattttacaatgacaatattggtaggtagtgacaacacatgccgtacaatagttccttcctccctttgtctcattgaggttaattatc |
3815579 |
T |
|
| Q |
215 |
agttaaaatatttaccgataagcgatagtaaaaacagcaatatattaacagatatactaatatttaccttgaaggtgatattctttgcagagaaatagtt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3815578 |
agttaaaatatttaccgataagcgatagtaaaaacagcaatatattaacagatatactaatatttaccttgaaggtgatattctttgcagagaaatagtt |
3815479 |
T |
|
| Q |
315 |
ggcaaagacagtaacagaagcagttctataagtacgtagctgttgtccattgggaccaggatcacaagctctatcatgccattcaatcactgttacttct |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3815478 |
ggcaaagacagtaacagaagcagttctataagtacgtagctgttgtccattgggaccaggatcacaagctctatcatgccattcaatcactgttacttct |
3815379 |
T |
|
| Q |
415 |
ctcccttccccttgaaatgttatgtacggttttgtcacgggaactaccactttctctctgcaccatcaagtttatatgcaccaccaaa |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3815378 |
ctcccttccccttgaaatgttatgtacggttttgtcacgggaactaccactttctctctgcaccatcaagtttatatgcaccaccaaa |
3815291 |
T |
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