View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7347_high_19 (Length: 494)

Name: NF7347_high_19
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7347_high_19
NF7347_high_19
[»] chr1 (13 HSPs)
chr1 (21-473)||(23995961-23996413)
chr1 (213-309)||(42475273-42475369)
chr1 (190-309)||(23451086-23451204)
chr1 (223-305)||(12687164-12687246)
chr1 (308-386)||(40231806-40231884)
chr1 (320-428)||(52249015-52249123)
chr1 (308-425)||(23450832-23450949)
chr1 (317-389)||(25393530-25393602)
chr1 (245-309)||(5677829-5677893)
chr1 (213-309)||(52249239-52249335)
chr1 (308-365)||(36099752-36099809)
chr1 (310-386)||(25528924-25529000)
chr1 (317-421)||(27364963-27365067)
[»] chr3 (9 HSPs)
chr3 (191-309)||(38456797-38456907)
chr3 (190-309)||(45967995-45968114)
chr3 (317-459)||(45968186-45968328)
chr3 (227-309)||(29543447-29543529)
chr3 (227-300)||(42807350-42807423)
chr3 (245-309)||(6893149-6893213)
chr3 (227-300)||(22532977-22533050)
chr3 (190-287)||(35502911-35503008)
chr3 (319-425)||(6892970-6893076)
[»] chr2 (8 HSPs)
chr2 (225-305)||(1998752-1998832)
chr2 (190-309)||(21579672-21579791)
chr2 (245-309)||(40430106-40430170)
chr2 (308-470)||(24738539-24738701)
chr2 (308-452)||(40430268-40430412)
chr2 (225-298)||(24738784-24738857)
chr2 (246-309)||(12605825-12605888)
chr2 (310-438)||(39116209-39116337)
[»] chr5 (8 HSPs)
chr5 (213-309)||(22935563-22935659)
chr5 (310-455)||(25324921-25325066)
chr5 (311-429)||(12832722-12832840)
chr5 (311-429)||(12864700-12864818)
chr5 (223-305)||(7962191-7962273)
chr5 (308-429)||(32019203-32019324)
chr5 (246-295)||(32019064-32019113)
chr5 (310-383)||(42456633-42456706)
[»] chr4 (10 HSPs)
chr4 (308-458)||(20509143-20509293)
chr4 (225-305)||(18920872-18920952)
chr4 (245-309)||(13156402-13156466)
chr4 (308-425)||(33100717-33100834)
chr4 (308-429)||(54872030-54872151)
chr4 (317-428)||(8812781-8812892)
chr4 (308-421)||(9830168-9830281)
chr4 (190-295)||(54871841-54871946)
chr4 (308-391)||(18920726-18920809)
chr4 (245-307)||(8812996-8813058)
[»] chr8 (8 HSPs)
chr8 (192-309)||(43775209-43775326)
chr8 (308-429)||(7180228-7180349)
chr8 (227-300)||(7180085-7180158)
chr8 (310-383)||(16839123-16839196)
chr8 (213-282)||(38737407-38737476)
chr8 (334-389)||(3758902-3758957)
chr8 (308-373)||(29721168-29721233)
chr8 (309-389)||(460277-460357)
[»] chr6 (8 HSPs)
chr6 (308-470)||(32534240-32534402)
chr6 (225-306)||(32534099-32534180)
chr6 (245-309)||(5668444-5668508)
chr6 (329-383)||(2540791-2540845)
chr6 (319-425)||(5668581-5668687)
chr6 (343-389)||(12608293-12608339)
chr6 (337-470)||(12686912-12687045)
chr6 (245-305)||(18016811-18016870)
[»] chr7 (7 HSPs)
chr7 (308-429)||(27853645-27853766)
chr7 (225-305)||(40617783-40617863)
chr7 (329-428)||(14316632-14316730)
chr7 (308-458)||(38153415-38153565)
chr7 (246-298)||(27853847-27853899)
chr7 (213-286)||(29375746-29375819)
chr7 (225-309)||(37136579-37136663)
[»] scaffold0225 (1 HSPs)
scaffold0225 (245-309)||(5461-5525)


Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 21 - 473
Target Start/End: Complemental strand, 23996413 - 23995961
Alignment:
Q  21 cgcaaacatcagtccaacatagggtattaataccgtcacgaacagagcgactaacatggttgttaaaccacccctcctcacgcaacagaaaaatattcct 120  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23996413 cgcaaacatcagtccaacagagggtattaataccgtcacgaacagagcgactaacatggttgttaaaccatccctcctcacgcaacagaaaaatattcct 23996314  T
Q  121 ccaccacagagagccgtctcggccaccctgacaacactggcctccctccaccccataccgagtcgacataccacttccctaacaaagaaagtttaaactc 220  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23996313 ccaccacagagagccgtctcggccaccctgacaacagtggcctccctccaccccataccgagtcgacataccacttccctaacaaagaaagtttaaactc 23996214  T
Q  221 cctaattctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtctacacggagccgtgaa 320  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23996213 cctaattctccttacccactgacctccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtctacatggagccgtgaa 23996114  T
Q  321 aaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctccaacccgacagtcta 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||    
T  23996113 aaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccatccaaagacagatacctcgacctccaacccgagagtcta 23996014  T
Q  421 gaattaatatggctaataatagggtcccaaaacgacaactgacgagcatttcc 473  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23996013 gaattaatatggctaataatagggtcccaaaacaacaactgacgagcatttcc 23995961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 309
Target Start/End: Complemental strand, 42475369 - 42475273
Alignment:
Q  213 ttaaactccctaattctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtctacac 309  Q
    ||||| ||||||||||||||||||| |  ||  |||||||||||||||||| | |||||||||||||||| ||||| || |||| ||| ||||||||    
T  42475369 ttaaagtccctaattctccttacccccaaaccgccaacctcctgactccgatagatagactgccaatcaatccaaaaaaatttcatgtggtctacac 42475273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 190 - 309
Target Start/End: Complemental strand, 23451204 - 23451086
Alignment:
Q  190 accacttccctaacaaagaaagtttaaactccctaattctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaat 289  Q
    ||||||||||||| | || ||  ||||| |||||||||||||| |||| | ||| || ||||||||||||| |||||||| | |||||||||| |||| |    
T  23451204 accacttccctaatacagcaaaattaaaatccctaattctcctaacccccagacctc-aacctcctgactcagacaaataaattgccaatcaatccaagt 23451106  T
Q  290 aattttcctgttgtctacac 309  Q
     |||||||||| ||||||||    
T  23451105 tattttcctgtggtctacac 23451086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 12687246 - 12687164
Alignment:
Q  223 taattctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtct 305  Q
    ||||||||||||||| |   | ||||||||||||||||||||||||||| | ||| ||||||||||| |||||||||| ||||    
T  12687246 taattctccttacccccaatcctccaacctcctgactccgacaaatagatttccagtcaacccaaatgattttcctgtggtct 12687164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 386
Target Start/End: Original strand, 40231806 - 40231884
Alignment:
Q  308 acggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaa 386  Q
    |||||||| |||||||  || |||| |||||||||||||| |||||||||||||||||||||| ||| || ||||||||    
T  40231806 acggagccttgaaaaaggaaagagcataaacaggcagagacgacaggacagacttcagcaaaaccagacggccacccaa 40231884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 320 - 428
Target Start/End: Complemental strand, 52249123 - 52249015
Alignment:
Q  320 aaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctccaacccgacagtct 419  Q
    ||||| || |||| ||||||||||  || |||||||||||||||| || || ||| || |||||||| |||| ||| ||||| ||||| || ||||||||    
T  52249123 aaaaaaaaagagcataaacaggcaacgatgacaggacagacttcaacagaaccagccgcccacccaacgacaaatatctcgaactccaccctgacagtct 52249024  T
Q  420 agaattaat 428  Q
    |||||||||    
T  52249023 agaattaat 52249015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 425
Target Start/End: Complemental strand, 23450949 - 23450832
Alignment:
Q  308 acggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctcca 407  Q
    |||||||| |||||||| || |||| |||||||| |  || ||||| ||||||||||  | || ||| ||||||||||||||||| || ||||| |||||    
T  23450949 acggagccttgaaaaaagaaagagcataaacaggaaacgatgacagtacagacttcaaaagaaccagacgaccacccaaagacatgtatctcgaactcca 23450850  T
Q  408 acccgacagtctagaatt 425  Q
     | ||||||| |||||||    
T  23450849 cctcgacagtttagaatt 23450832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 25393530 - 25393602
Alignment:
Q  317 tgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaaga 389  Q
    ||||||||||| |||| |||||||||||||| || | |||| |||||||||||| ||  ||||||||||||||    
T  25393530 tgaaaaaataaagagcataaacaggcagagacgatatgacaaacttcagcaaaaccaaacgaccacccaaaga 25393602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 5677829 - 5677893
Alignment:
Q  245 tccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtctacac 309  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||  |||||| ||| | ||||||    
T  5677829 tccaacctcctgactccgacaaatagaattccagtcaacccaaaatattttcatgtggcctacac 5677893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 309
Target Start/End: Complemental strand, 52249335 - 52249239
Alignment:
Q  213 ttaaactccctaattctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtctacac 309  Q
    ||||| || |||||||||||||||| |   | |||||||||||||||||| |||||||  || ||||||| ||||  |||| |||||| ||||||||    
T  52249335 ttaaaatctctaattctccttacccccaatcctccaacctcctgactccggcaaatagtttgtcaatcaatccaagaaattgtcctgtggtctacac 52249239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 365
Target Start/End: Original strand, 36099752 - 36099809
Alignment:
Q  308 acggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcag 365  Q
    |||||||| |||||||| || |||| |||||||| || || |||||||||||||||||    
T  36099752 acggagccttgaaaaaagaaagagcataaacaggaagcgacgacaggacagacttcag 36099809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 25529000 - 25528924
Alignment:
Q  310 ggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaa 386  Q
    |||||| |||||||| |  |||| |||||||||||||| |||| |||| | |||| ||||| ||| |||||||||||    
T  25529000 ggagccttgaaaaaagatagagcataaacaggcagagatgacatgacaaaattcaacaaaaccagtcgaccacccaa 25528924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 421
Target Start/End: Original strand, 27364963 - 27365067
Alignment:
Q  317 tgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctccaacccgacag 416  Q
    |||||||| || | || ||||||||||| || ||||||||||| ||||| |||| || |||||| || ||||| | ||   ||||  |||||||||||||    
T  27364963 tgaaaaaagaaagggcgtaaacaggcagcgacgacaggacagatttcagtaaaaccaagcgacccccgaaagataaatgtttcgatttccaacccgacag 27365062  T
Q  417 tctag 421  Q
    |||||    
T  27365063 tctag 27365067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 191 - 309
Target Start/End: Original strand, 38456797 - 38456907
Alignment:
Q  191 ccacttccctaacaaagaaagtttaaactccctaattctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaata 290  Q
    |||||| ||||| |||| ||  ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||||||||||||    
T  38456797 ccacttgcctaataaagcaatattaaactccctaattctccttacc--------tccaacctcctgactccgacaaatagactgccagtcaacccaaata 38456888  T
Q  291 attttcctgttgtctacac 309  Q
    |||||||||| ||||||||    
T  38456889 attttcctgtggtctacac 38456907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 190 - 309
Target Start/End: Original strand, 45967995 - 45968114
Alignment:
Q  190 accacttccctaacaaagaaagtttaaactccctaattctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaat 289  Q
    ||||||||| ||| |||| ||  |||||||||||||||||||||| || |  ||  |||||||||||||||||||||||||||||||| |||||||||||    
T  45967995 accacttccttaataaagcaatgttaaactccctaattctccttatccccaaactaccaacctcctgactccgacaaatagactgccagtcaacccaaat 45968094  T
Q  290 aattttcctgttgtctacac 309  Q
     ||||| || | ||||||||    
T  45968095 gatttttctatggtctacac 45968114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 459
Target Start/End: Original strand, 45968186 - 45968328
Alignment:
Q  317 tgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctccaacccgacag 416  Q
    |||||||| || |||| || ||| ||||| | ||||||||| |||||||||||| ||| ||| | || | ||||| |||||||||||| |||||||||||    
T  45968186 tgaaaaaagaaagagcatatacaagcagatatgacaggacaaacttcagcaaaaccagacgatctcctagagacaaatacctcgaccttcaacccgacag 45968285  T
Q  417 tctagaattaatatggctaataatagggtcccaaaacgacaac 459  Q
    |||||| || || ||   ||| | |||||||||||||||||||    
T  45968286 tctagagtttatctgatcaatgaaagggtcccaaaacgacaac 45968328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 309
Target Start/End: Original strand, 29543447 - 29543529
Alignment:
Q  227 tctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtctacac 309  Q
    ||||||||||| | ||| |||||||||||||||| |||||| ||| | ||||||||||||||| ||||| |||| ||||||||    
T  29543447 tctccttacccccagacctccaacctcctgactctgacaaacagatttccaatcaacccaaatgatttttctgtggtctacac 29543529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 42807350 - 42807423
Alignment:
Q  227 tctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgt 300  Q
    ||||||||||| | ||| ||||||||||||||||||||||| ||| | ||| ||||||||||| ||||| ||||    
T  42807350 tctccttacccccagacctccaacctcctgactccgacaaacagatttccagtcaacccaaatgatttttctgt 42807423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 6893213 - 6893149
Alignment:
Q  245 tccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtctacac 309  Q
    ||||||||||||||||||||||||||| | ||| |||||||||| || |||||| | ||||||||    
T  6893213 tccaacctcctgactccgacaaatagaatcccagtcaacccaaaaaaatttcctatggtctacac 6893149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 22533050 - 22532977
Alignment:
Q  227 tctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgt 300  Q
    ||||||||||| | ||| ||||||||||| ||||||||||| ||| | ||| ||||||||||| ||||| ||||    
T  22533050 tctccttacccccagacctccaacctccttactccgacaaacagatttccagtcaacccaaatgatttttctgt 22532977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 35503008 - 35502911
Alignment:
Q  190 accacttccctaacaaagaaagtttaaactccctaattctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaa 287  Q
    |||||||||| ||||||| |   ||||||||||||||||||||||||| | |||  ||||||||||  |||| ||||| ||| | ||| |||||||||    
T  35503008 accacttcccaaacaaagcactattaaactccctaattctccttacccccagaccgccaacctccttcctcccacaaacagaattccagtcaacccaa 35502911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 425
Target Start/End: Complemental strand, 6893076 - 6892970
Alignment:
Q  319 aaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctccaacccgacagtc 418  Q
    |||||| || |||| |||||||| || || ||||||||| | ||||| |||| ||  || |||||||| ||||  |  |||||| |||||||||||||||    
T  6893076 aaaaaagaaagagcataaacagggagtgatgacaggacatatttcagtaaaaccaaacggccacccaaggacaagtgtctcgacttccaacccgacagtc 6892977  T
Q  419 tagaatt 425  Q
    |||||||    
T  6892976 tagaatt 6892970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 225 - 305
Target Start/End: Original strand, 1998752 - 1998832
Alignment:
Q  225 attctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtct 305  Q
    ||||||||||||| |  || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  1998752 attctccttacccccaaacctccaacctcctgactccgacaaatagattgccaatcaacccaaataattttcctgtggtct 1998832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 190 - 309
Target Start/End: Original strand, 21579672 - 21579791
Alignment:
Q  190 accacttccctaacaaagaaagtttaaactccctaattctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaat 289  Q
    ||||||||||||| |||| |   ||||||||||||||||||||||||| |  ||  ||||||| |||||||||||||| ||| ||||||||||||||| |    
T  21579672 accacttccctaataaagcactattaaactccctaattctccttaccctcaaaccaccaaccttctgactccgacaaacagaatgccaatcaacccaact 21579771  T
Q  290 aattttcctgttgtctacac 309  Q
    || ||| |||| ||||||||    
T  21579772 aacttttctgtggtctacac 21579791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 40430106 - 40430170
Alignment:
Q  245 tccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtctacac 309  Q
    ||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||| ||||||||    
T  40430106 tccaacctcctcactccgacaaatagatttccagtcaacccaaataattttcctgtggtctacac 40430170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 470
Target Start/End: Complemental strand, 24738701 - 24738539
Alignment:
Q  308 acggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctcca 407  Q
    |||||||| | |||||| || |||| |||||||||| ||| || ||||||||||| || |||| || |||||||||||||||||  |   ||||| ||||    
T  24738701 acggagccttaaaaaaagaaagagcataaacaggcatagacgataggacagacttaagtaaaaccaagcgaccacccaaagacaagtgtttcgacttcca 24738602  T
Q  408 acccgacagtctagaattaatatggctaataatagggtcccaaaacgacaactgacgagcatt 470  Q
    || ||||| ||||||||||||| || |||| | ||| | |||||||  |||| ||| ||||||    
T  24738601 actcgacaatctagaattaatacggttaatgagaggcttccaaaacaccaaccgactagcatt 24738539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 308 - 452
Target Start/End: Original strand, 40430268 - 40430412
Alignment:
Q  308 acggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctcca 407  Q
    |||||||| |||||||| || |||| ||||||||||| || |||| |||| ||||||| |||| || ||| |||||||||||||  |   ||||  ||||    
T  40430268 acggagccttgaaaaaagaaagagcataaacaggcagggacgacatgacaaacttcagtaaaaccaagcggccacccaaagacaagtgtttcgatttcca 40430367  T
Q  408 acccgacagtctagaattaatatggctaataatagggtcccaaaa 452  Q
    ||| ||||||||||| |||||  || |||||| ||| ||||||||    
T  40430368 acctgacagtctagagttaatgcggttaataagaggatcccaaaa 40430412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 24738857 - 24738784
Alignment:
Q  225 attctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcct 298  Q
    ||||||||||||| |  ||  |||||||||||||||||||||| ||| | |||||||||||| |||||||||||    
T  24738857 attctccttacccccaaaccaccaacctcctgactccgacaaacagaattccaatcaacccatataattttcct 24738784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 12605888 - 12605825
Alignment:
Q  246 ccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtctacac 309  Q
    |||||||||||||||||||||||||| || ||||||| ||||  |||||| |||| ||||||||    
T  12605888 ccaacctcctgactccgacaaatagattgtcaatcaatccaagaaatttttctgtggtctacac 12605825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 438
Target Start/End: Complemental strand, 39116337 - 39116209
Alignment:
Q  310 ggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctccaac 409  Q
    |||||| |||||||  || |||| || ||| ||||||| |||| ||| ||||||||||||| ||| ||||| |||| ||| | ||   ||||  ||||||    
T  39116337 ggagccttgaaaaaggaaagagcatagacaagcagagacgacatgaccgacttcagcaaaaccagacgaccccccatagaaagatgtttcgaattccaac 39116238  T
Q  410 ccgacagtctagaattaatatggctaata 438  Q
    ||| ||||||||| |||||| || |||||    
T  39116237 ccgtcagtctagatttaatacggttaata 39116209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 309
Target Start/End: Complemental strand, 22935659 - 22935563
Alignment:
Q  213 ttaaactccctaattctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtctacac 309  Q
    ||||| ||||||||||||||||||| |  ||  |||||||||||||||||||||||||| |||||||||| |||||  |||||||||| ||||||||    
T  22935659 ttaaaatccctaattctccttacccccaaaccgccaacctcctgactccgacaaatagattgccaatcaatccaaaatattttcctgtggtctacac 22935563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 455
Target Start/End: Complemental strand, 25325066 - 25324921
Alignment:
Q  310 ggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctccaac 409  Q
    |||||| |||||||| || |||| ||||||||||| || ||||||| |||||||| || || ||| || ||||||||||||| ||   ||||  ||||||    
T  25325066 ggagccttgaaaaaagaaagagcataaacaggcagcgacgacaggatagacttcaacagaaccagccggccacccaaagacaaatgtttcgatttccaac 25324967  T
Q  410 ccgacagtctagaattaatatggctaataatagggtcccaaaacga 455  Q
    ||||||||||||  ||||||||| ||||||  || |||||||||||    
T  25324966 ccgacagtctagttttaatatggttaataagcggttcccaaaacga 25324921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 429
Target Start/End: Original strand, 12832722 - 12832840
Alignment:
Q  311 gagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctccaacc 410  Q
    ||||| |||||||| || | || |||||||||||||| |||||||| ||||||| ||||| |||||||||||||||||| | ||   ||||  |||||||    
T  12832722 gagccttgaaaaaagaaagggcgtaaacaggcagagacgacaggactgacttcaacaaaaccaggcgaccacccaaagataaatgtttcgaattccaacc 12832821  T
Q  411 cgacagtctagaattaata 429  Q
    || ||||||||| ||||||    
T  12832822 cgtcagtctagacttaata 12832840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 429
Target Start/End: Original strand, 12864700 - 12864818
Alignment:
Q  311 gagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctccaacc 410  Q
    ||||| |||||||| || | || |||||||||||||| |||||||| ||||||| ||||| |||||||||||||||||| | ||   ||||  |||||||    
T  12864700 gagccttgaaaaaagaaagggcgtaaacaggcagagacgacaggactgacttcaacaaaaccaggcgaccacccaaagataaatgtttcgaattccaacc 12864799  T
Q  411 cgacagtctagaattaata 429  Q
    || ||||||||| ||||||    
T  12864800 cgtcagtctagacttaata 12864818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 305
Target Start/End: Original strand, 7962191 - 7962273
Alignment:
Q  223 taattctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtct 305  Q
    |||||||||| |||| |  || |||||| |||||||||||||||| ||| | |||||||||||||||||||||||||| ||||    
T  7962191 taattctcctaacccccaaacctccaacttcctgactccgacaaacagaattccaatcaacccaaataattttcctgtggtct 7962273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 429
Target Start/End: Original strand, 32019203 - 32019324
Alignment:
Q  308 acggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctcca 407  Q
    |||||||| | |||||| || |||| |||||||||||||| || ||||||||||| || |||| || ||| ||||||||||||| | |  ||||| ||||    
T  32019203 acggagccttaaaaaaagaaagagcataaacaggcagagacgataggacagacttaagtaaaaccaagcggccacccaaagacaaaaatttcgacttcca 32019302  T
Q  408 acccgacagtctagaattaata 429  Q
    || ||||| |||||| ||||||    
T  32019303 actcgacaatctagagttaata 32019324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 32019064 - 32019113
Alignment:
Q  246 ccaacctcctgactccgacaaatagactgccaatcaacccaaataatttt 295  Q
    |||||||||||||||||||||| ||| | |||||||||||||||||||||    
T  32019064 ccaacctcctgactccgacaaacagaattccaatcaacccaaataatttt 32019113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 383
Target Start/End: Complemental strand, 42456706 - 42456633
Alignment:
Q  310 ggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacc 383  Q
    |||||| |||||||| || |||| ||||||| || ||| |||| ||||||||||| || || ||||||||||||    
T  42456706 ggagccttgaaaaaagaaagagcataaacagacaaagatgacaagacagacttcaacagaaccaggcgaccacc 42456633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 308 - 458
Target Start/End: Complemental strand, 20509293 - 20509143
Alignment:
Q  308 acggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctcca 407  Q
    |||||||| |||| ||| || | || |||||||||||||| |||||||| ||||||| ||||| |||||||||||||||||| | ||   ||||  ||||    
T  20509293 acggagccttgaagaaagaaagggcataaacaggcagagacgacaggactgacttcaacaaaaccaggcgaccacccaaagataaatgtttcgaattcca 20509194  T
Q  408 acccgacagtctagaattaatatggctaataatagggtcccaaaacgacaa 458  Q
    ||||| ||||||||| |||| | || |||| || || ||||||||||||||    
T  20509193 acccgtcagtctagatttaacacggttaatgattggttcccaaaacgacaa 20509143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 225 - 305
Target Start/End: Complemental strand, 18920952 - 18920872
Alignment:
Q  225 attctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtct 305  Q
    ||||||||||||| |  || ||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||    
T  18920952 attctccttacccccaaacctccaacctcctgactccgacaaatagattgcaaataaacccaaataattttcctgtggtct 18920872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 13156466 - 13156402
Alignment:
Q  245 tccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtctacac 309  Q
    ||||||||||||||||||||| ||||  |||||||||||| ||||||||||||||| ||||||||    
T  13156466 tccaacctcctgactccgacatatagtatgccaatcaacctaaataattttcctgtggtctacac 13156402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 425
Target Start/End: Complemental strand, 33100834 - 33100717
Alignment:
Q  308 acggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctcca 407  Q
    |||||||| |||||||| || |||| ||||||||||| || ||||||||| ||||||  |||| ||  || |||||||| ||||  |  | |||| ||||    
T  33100834 acggagccttgaaaaaagaaagagcataaacaggcagtgatgacaggacaaacttcactaaaaccaaacggccacccaaggacaagtgtcccgacttcca 33100735  T
Q  408 acccgacagtctagaatt 425  Q
    ||||||||||||||||||    
T  33100734 acccgacagtctagaatt 33100717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 429
Target Start/End: Original strand, 54872030 - 54872151
Alignment:
Q  308 acggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctcca 407  Q
    |||||||| |||||||| || |||| |||||||| || || || |||||| ||||||| |||| ||| || |||||||||||||  |   ||||| ||||    
T  54872030 acggagccttgaaaaaacaaagagcataaacaggaagggacgataggacaaacttcagtaaaaccagacggccacccaaagacaagtgtttcgacttcca 54872129  T
Q  408 acccgacagtctagaattaata 429  Q
    |||||||| |||||| ||||||    
T  54872130 acccgacaatctagagttaata 54872151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 428
Target Start/End: Complemental strand, 8812892 - 8812781
Alignment:
Q  317 tgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctccaacccgacag 416  Q
    |||||||| || |||| ||||||||||   | |||||||||||||||| || || ||| || |||||||| |||| ||| ||||| ||||| ||  ||||    
T  8812892 tgaaaaaagaaagagcataaacaggcaacaatgacaggacagacttcaacagaaccagacgcccacccaacgacaaatatctcgaactccaccctaacag 8812793  T
Q  417 tctagaattaat 428  Q
    ||||||||||||    
T  8812792 tctagaattaat 8812781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 421
Target Start/End: Complemental strand, 9830281 - 9830168
Alignment:
Q  308 acggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctcca 407  Q
    |||||||| |||||||| || |||| ||||||||||| || |||| ||||||||| || |  | ||| |||||||||||||||| ||   | ||  ||||    
T  9830281 acggagccttgaaaaaacaaagagcataaacaggcagcgacgacaagacagactttagaagcaccagacgaccacccaaagacaaatgttttgatttcca 9830182  T
Q  408 acccgacagtctag 421  Q
    ||||||||||||||    
T  9830181 acccgacagtctag 9830168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 295
Target Start/End: Original strand, 54871841 - 54871946
Alignment:
Q  190 accacttccctaacaaagaaagtttaaactccctaattctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaat 289  Q
    |||||||||||||||| |  |  ||||||||  | |||||||| |||| |  || ||||||||||||||||||||||| ||| | ||| || ||||||||    
T  54871841 accacttccctaacaatgctaaattaaactcttttattctcctaacccccaaacctccaacctcctgactccgacaaacagatttccagtctacccaaat 54871940  T
Q  290 aatttt 295  Q
    ||||||    
T  54871941 aatttt 54871946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 391
Target Start/End: Complemental strand, 18920809 - 18920726
Alignment:
Q  308 acggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagaca 391  Q
    |||||||| |||||||| || |||| |||| |||||| || || || ||| ||||||| |||| || |||||||||||||||||    
T  18920809 acggagccttgaaaaaagaaagagcataaataggcagggatgatagaacaaacttcagtaaaaccaagcgaccacccaaagaca 18920726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 8813058 - 8812996
Alignment:
Q  245 tccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtctac 307  Q
    |||||||||||||||||| |||||||  || ||||||| ||||  ||||||||||| ||||||    
T  8813058 tccaacctcctgactccggcaaatagtttgtcaatcaatccaagaaattttcctgtggtctac 8812996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 309
Target Start/End: Complemental strand, 43775326 - 43775209
Alignment:
Q  192 cacttccctaacaaagaaagtttaaactccctaattctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaataa 291  Q
    ||||||||||||| || ||  ||||| ||||||||||||||||||| |  ||  |||||||||||||| |||||||||||||||| |||||  |||  ||    
T  43775326 cacttccctaacagagcaatattaaagtccctaattctccttacccccaaaccgccaacctcctgactacgacaaatagactgccgatcaatgcaagaaa 43775227  T
Q  292 ttttcctgttgtctacac 309  Q
    ||||||||| ||||||||    
T  43775226 ttttcctgtggtctacac 43775209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 429
Target Start/End: Original strand, 7180228 - 7180349
Alignment:
Q  308 acggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctcca 407  Q
    |||||||| |||||||| || |||| ||||||||||| || || |||||||||||||| |||| || ||| ||||| |||||||  |   ||||| ||||    
T  7180228 acggagccttgaaaaaagaaagagcataaacaggcagggacgataggacagacttcagtaaaaccaagcggccacctaaagacaagtgtttcgacttcca 7180327  T
Q  408 acccgacagtctagaattaata 429  Q
    |||||||| |||||| ||||||    
T  7180328 acccgacaatctagagttaata 7180349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 7180085 - 7180158
Alignment:
Q  227 tctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgt 300  Q
    ||||||||||| |  || || |||||||||||||||||||| ||| | |||||||||| |||||||||| ||||    
T  7180085 tctccttacccccaaacctcaaacctcctgactccgacaaacagatttccaatcaacctaaataatttttctgt 7180158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 383
Target Start/End: Complemental strand, 16839196 - 16839123
Alignment:
Q  310 ggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacc 383  Q
    |||||| |||||||| || | || |||||||| ||||| || |||||||||||||| |||| ||||||||||||    
T  16839196 ggagccttgaaaaaagaaagcgcataaacaggtagagaagataggacagacttcagtaaaaccaggcgaccacc 16839123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 38737476 - 38737407
Alignment:
Q  213 ttaaactccctaattctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaa 282  Q
    ||||| || ||||||||||| |||| |  || ||||||||||||||||||||||||||  ||||||||||    
T  38737476 ttaaaatctctaattctcctaacccccaaacctccaacctcctgactccgacaaatagtatgccaatcaa 38737407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 3758957 - 3758902
Alignment:
Q  334 taaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaaga 389  Q
    ||||||||||| || |||||||||||||| | || || ||||||||||||||||||    
T  3758957 taaacaggcagcgatgacaggacagactttaacagaaccaggcgaccacccaaaga 3758902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 373
Target Start/End: Complemental strand, 29721233 - 29721168
Alignment:
Q  308 acggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatca 373  Q
    |||||||  |||||||  || |||| || ||||||| |||||||||||||||||| ||||||||||    
T  29721233 acggagctttgaaaaaggaaagagcatagacaggcaaagaggacaggacagacttgagcaaaatca 29721168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 460277 - 460357
Alignment:
Q  309 cggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaaga 389  Q
    ||||||| | |||||| || |||| |||||||| ||||| || | ||||||||||||||||| ||| || ||| |||||||    
T  460277 cggagccttaaaaaaagaaagagcataaacaggtagagatgatatgacagacttcagcaaaaccagacggccatccaaaga 460357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 308 - 470
Target Start/End: Original strand, 32534240 - 32534402
Alignment:
Q  308 acggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctcca 407  Q
    |||||||| |||||||| || |||  ||||||||||| || || |||||| ||||||| |||||||  || |||||||||||||  |   ||||| ||||    
T  32534240 acggagccttgaaaaaagaaagagtataaacaggcagggacgataggacaaacttcagtaaaatcaaacggccacccaaagacaagtgattcgacttcca 32534339  T
Q  408 acccgacagtctagaattaatatggctaataatagggtcccaaaacgacaactgacgagcatt 470  Q
    |||||||| ||||||||||||| || |||| | ||| |||||||||  |||| ||| ||||||    
T  32534340 acccgacaatctagaattaatacggttaatgagaggctcccaaaacaccaaccgactagcatt 32534402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 32534099 - 32534180
Alignment:
Q  225 attctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtcta 306  Q
    ||||||||||||| |  || ||||||||||||||| ||||||| | | | |||||||||||||||||||||| ||| |||||    
T  32534099 attctccttacccccaaacctccaacctcctgacttcgacaaacataattccaatcaacccaaataattttcatgtggtcta 32534180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 5668444 - 5668508
Alignment:
Q  245 tccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtctacac 309  Q
    ||||||||||||||||||||||||||| | ||| |||||||||| || |||||| | ||||||||    
T  5668444 tccaacctcctgactccgacaaatagaatcccagtcaacccaaaaaaatttcctatggtctacac 5668508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 2540791 - 2540845
Alignment:
Q  329 gagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacc 383  Q
    |||| |||||||||||||| ||||||||||||||||||||||  || ||||||||    
T  2540791 gagcataaacaggcagagatgacaggacagacttcagcaaaactagacgaccacc 2540845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 425
Target Start/End: Original strand, 5668581 - 5668687
Alignment:
Q  319 aaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctccaacccgacagtc 418  Q
    |||||| || |||| |||||||| || || ||||||||| | ||||| |||| ||  || |||||||| ||||  |  |||||| |||||||||||||||    
T  5668581 aaaaaagaaagagcataaacagggagtgatgacaggacatatttcagtaaaaccaaacggccacccaaggacaagtgtctcgacttccaacccgacagtc 5668680  T
Q  419 tagaatt 425  Q
    |||||||    
T  5668681 tagaatt 5668687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 12608293 - 12608339
Alignment:
Q  343 agagaggacaggacagacttcagcaaaatcaggcgaccacccaaaga 389  Q
    ||||||||||||||||||||||| | || |||||||||||| |||||    
T  12608293 agagaggacaggacagacttcagaagaaccaggcgaccaccaaaaga 12608339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 470
Target Start/End: Complemental strand, 12687045 - 12686912
Alignment:
Q  337 acaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctccaacccgacagtctagaattaatatggctaa 436  Q
    ||||||||||| |||||||  ||||||| ||||| ||| ||||| |||| ||| | ||   ||||  ||||||||| ||||||||| |||||| |  |||    
T  12687045 acaggcagagatgacaggatcgacttcaacaaaaccagacgaccccccatagaaagatgtttcgaattccaacccgtcagtctagatttaatacgtttaa 12686946  T
Q  437 taatagggtcccaaaacgacaactgacgagcatt 470  Q
    |||| || |||||||| ||||   ||||||||||    
T  12686945 taattggttcccaaaaggacagtcgacgagcatt 12686912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 18016811 - 18016870
Alignment:
Q  245 tccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtct 305  Q
    ||||||||||||||||||||||||||| | || | |||||||||| |||||| ||| ||||    
T  18016811 tccaacctcctgactccgacaaatagatttcc-agcaacccaaatgattttcatgtggtct 18016870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 308 - 429
Target Start/End: Complemental strand, 27853766 - 27853645
Alignment:
Q  308 acggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctcca 407  Q
    |||||||| | |||||| || |||| |||||||||||||| || ||||||||||| || |||| || |||||||||||||||||  |   ||||| ||||    
T  27853766 acggagccttaaaaaaagaaagagcataaacaggcagagacgataggacagacttgagtaaaaccaagcgaccacccaaagacaagtgtttcgacttcca 27853667  T
Q  408 acccgacagtctagaattaata 429  Q
    || ||||| |||||||||||||    
T  27853666 actcgacaatctagaattaata 27853645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 305
Target Start/End: Original strand, 40617783 - 40617863
Alignment:
Q  225 attctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtct 305  Q
    ||||||||||||| |  || ||||||||||||||||||||||| | | | |||||||||||||||||||||||||| ||||    
T  40617783 attctccttaccctcaaacctccaacctcctgactccgacaaacaaaattccaatcaacccaaataattttcctgtggtct 40617863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 428
Target Start/End: Original strand, 14316632 - 14316730
Alignment:
Q  329 gagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctccaacccgacagtctagaattaat 428  Q
    |||| |||||||||||||| ||||||||| |||||||||||||||| |||| ||| ||||| | ||   | ||| ||||||||||||||||||| |||||    
T  14316632 gagcataaacaggcagagatgacaggacatacttcagcaaaatcagacgac-accaaaagataaatgtttggacttccaacccgacagtctagacttaat 14316730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 308 - 458
Target Start/End: Complemental strand, 38153565 - 38153415
Alignment:
Q  308 acggagccgtgaaaaaataatgagcttaaacaggcagagaggacaggacagacttcagcaaaatcaggcgaccacccaaagacatatacctcgacctcca 407  Q
    |||||||| ||| |||| || |||| ||||||||||| || |||| ||||||||||||||||| ||  |||||||||| ||||| |  | ||||  | ||    
T  38153565 acggagccttgacaaaagaaagagcataaacaggcagcgacgacaagacagacttcagcaaaaccaaacgaccacccagagacagaagcttcgattttca 38153466  T
Q  408 acccgacagtctagaattaatatggctaataatagggtcccaaaacgacaa 458  Q
    ||| ||||||||||  |||||| |  |||||| ||| |||||||| |||||    
T  38153465 acctgacagtctagtcttaatacgattaataaaaggatcccaaaaggacaa 38153415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 27853899 - 27853847
Alignment:
Q  246 ccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcct 298  Q
    |||||||||||||||||||||| ||| | |||||||||||| |||||||||||    
T  27853899 ccaacctcctgactccgacaaacagaattccaatcaacccatataattttcct 27853847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 29375746 - 29375819
Alignment:
Q  213 ttaaactccctaattctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaaccca 286  Q
    ||||||||||||||||||||||||| |  || ||||||||||| ||||| |||  |||| | ||||||||||||    
T  29375746 ttaaactccctaattctccttacccccaaacctccaacctccttactcctacagctagatttccaatcaaccca 29375819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 309
Target Start/End: Complemental strand, 37136663 - 37136579
Alignment:
Q  225 attctccttacccactgacgtccaacctcctgactccgacaaatagactgccaatcaacccaaataattttcctgttgtctacac 309  Q
    ||||||||||||| |  ||  |||||||||||||| ||||| ||||| |  || ||||||||||||||||||| || ||||||||    
T  37136663 attctccttacccccaaaccaccaacctcctgactacgacatatagattttcagtcaacccaaataattttccagtggtctacac 37136579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 5525 - 5461
Alignment:
Q  245 tccaacctcctgactccgacaaatag-actgccaatcaacccaaataattttcctgttgtctacac 309  Q
    ||||||||||||||||||||| |||| ||| ||| |||||||||| || |||||||| ||||||||    
T  5525 tccaacctcctgactccgacagatagtact-ccagtcaacccaaaaaaatttcctgtggtctacac 5461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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