View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_high_21 (Length: 452)
Name: NF7347_high_21
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 334
Target Start/End: Original strand, 7500886 - 7501203
Alignment:
| Q |
13 |
aatatccatcaacttatccttatatcaaacgacaagtatcttcaccnnnnnnngatgcaatttggatgacataggcctataaattcaagttacagatttg |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7500886 |
aatatccatcaacttatccttatatcaaacgacaagtatcttcaccaaaaaaagatgcaatttggatgacataagcctataaattcaagttacagatttg |
7500985 |
T |
|
| Q |
113 |
ccatagcccccaaaacagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaattaatacaaata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7500986 |
ccatagcccccaaaacagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaattaatacaaata |
7501085 |
T |
|
| Q |
213 |
aatgaggcacatatcttagccaagcatgccttaactcgcaatgactatatatgtatggcttgaagaatgtacttcatgtattcttgacatgtaatttctc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7501086 |
aatgaggcacatatcttagccaagcatgccttaactcacaatgac----tatgtatggcttgaagaatgtacttcatgtattcttgacatgtaatttctc |
7501181 |
T |
|
| Q |
313 |
ttgattgatttgtttcagcaaa |
334 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
7501182 |
ttgattgatttgtttcagcaaa |
7501203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 8142580 - 8142289
Alignment:
| Q |
13 |
aatatccatcaacttatccttatatcaaacgacaagtatcttcaccnnnnnnngatgcaatttggatgacataggcctataaattcaagttacagatttg |
112 |
Q |
| |
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|||||||||||| ||||| ||||| |||| | |||||||||||||| ||||||||||| || ||||| ||||||| |||||||||||||||||| |
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| T |
8142580 |
aatatccatcaatttatctttataccaaatgtcaagtatcttcaccaaaaaaagatgcaatttgtattacatatgcctatagattcaagttacagatttg |
8142481 |
T |
|
| Q |
113 |
ccatagcccccaaaacagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaattaatacaaata |
212 |
Q |
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||||||| ||||| ||| ||||| ||||||||||||||||||| | ||||||| | ||||||| ||||| |||||||||||||||| |||| ||||| |
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| T |
8142480 |
tcatagcctccaaagcagctaatatgaattggggaagggattatgagatgaaggatgggccagagtcttgtgtcgatttgatgcaaaatgaatataaata |
8142381 |
T |
|
| Q |
213 |
aatgaggcacatatcttagccaagcatgccttaactcgcaatgactatatatgtatggcttgaagaatgtacttcatgtattcttgacatgtaatt |
308 |
Q |
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||||||||||| |||||||||| ||| ||||||||| || |||| ||||||||||||||||| |||||||||| ||||||||| |||||||| |
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| T |
8142380 |
aatgaggcacacttcttagccaatcataccttaactcacagtgac----tatgtatggcttgaagattgtacttcatctattcttgatatgtaatt |
8142289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 330 - 434
Target Start/End: Original strand, 7501437 - 7501541
Alignment:
| Q |
330 |
gcaaatagtgaaagccgcaaaacagtttaaatagataattatatataaactaaagcatggtgcacacaaataaaagctacacaagttaaaaatccaggaa |
429 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7501437 |
gcaaatagtgaaagccgcaaaacagtttaaatagataattatatataaactaaagcatagtgcacacaaataaaagctacacaagttaaaaatccaggaa |
7501536 |
T |
|
| Q |
430 |
taaaa |
434 |
Q |
| |
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||||| |
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|
| T |
7501537 |
taaaa |
7501541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 7498100 - 7498299
Alignment:
| Q |
15 |
tatccatcaacttatccttatatcaaacgacaagtatcttcaccnnnnnnngatgcaatttggatgacataggcctataaattcaagttacagatttgcc |
114 |
Q |
| |
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|||||||||| ||||||||||| |||| | |||||||||| ||| ||||||||||| || ||||| |||||| ||| |||||||||||||| | |
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| T |
7498100 |
tatccatcaatttatccttataccaaatgccaagtatcttgaccaaaaaaagatgcaatttgaattacatatacctatagattaaagttacagatttgtc |
7498199 |
T |
|
| Q |
115 |
atagcccccaaaacagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaattaatacaaataaa |
214 |
Q |
| |
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|||||| ||||| ||| |||| |||||||||||| |||||| | |||||||| |||||||||| |||||||||||||||||||||| |||| ||||||| |
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| T |
7498200 |
atagcctccaaagcagcaaatatgaattggggaagagattatgaggtgaaggatgagccagagacttgtgacgatttgatgcaaaatgaatataaataaa |
7498299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 18375225 - 18375146
Alignment:
| Q |
330 |
gcaaatagtgaaagccgcaaaacagtttaaatagataattatatataaactaaagcatggtgcacacaaataaaagctac |
409 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| |||||| |||||||| |||||||| |||| |||||||||| |||| |
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| T |
18375225 |
gcaaatagtggaagccgcaaaatggtttaaataaataattgtatataaaagaaagcatgctgcaaacaaataaaaactac |
18375146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 332 - 410
Target Start/End: Original strand, 4931654 - 4931732
Alignment:
| Q |
332 |
aaatagtgaaagccgcaaaacagtttaaatagataattatatataaactaaagcatggtgcacacaaataaaagctaca |
410 |
Q |
| |
|
|||||||| |||| ||| | | ||| ||||| ||||||||||||||| ||||||||| ||||||||||||||| ||||| |
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| T |
4931654 |
aaatagtggaagctgcacacctgttgaaataaataattatatataaaataaagcatgttgcacacaaataaaaactaca |
4931732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 7498516 - 7498587
Alignment:
| Q |
262 |
tatgtatggcttgaagaatgtacttcatgtattcttgacatgtaatttc-tcttgattgatttgtttcagcaaa |
334 |
Q |
| |
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|||||||||| |||||||| ||| ||| ||||||||| |||||||||| | |||||||||||||||||||||| |
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| T |
7498516 |
tatgtatggcatgaagaat--actacatttattcttgatatgtaatttcctattgattgatttgtttcagcaaa |
7498587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 408
Target Start/End: Complemental strand, 9131007 - 9130940
Alignment:
| Q |
341 |
aagccgcaaaacagtttaaatagataattatatataaactaaagcatggtgcacacaaataaaagcta |
408 |
Q |
| |
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||||| |||||| ||| ||||| ||||||||||||||| ||||||||| | || |||||||||||||| |
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| T |
9131007 |
aagccacaaaacggttcaaataaataattatatataaaataaagcatgctacaaacaaataaaagcta |
9130940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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