View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_high_26 (Length: 396)
Name: NF7347_high_26
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 8005321 - 8005569
Alignment:
| Q |
16 |
atatagggaaaaatacaataattaacctcccttgaggtatgctcttatgtcacaaataccccctctattttacaaaaatatataagcctcccttatttgc |
115 |
Q |
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| T |
8005321 |
atatagggaaaaatacaataa----cctcccttgaggtatgctcttatgtcacaaataccccctctattttacaaaaatacataagcctcccttatttgc |
8005416 |
T |
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| Q |
116 |
ttctagatcggaattattttgaaccaatttccttccaatttattcgaaaagcctttcaccaccataaaatgaaagtgaacattcttttcttctaccaatt |
215 |
Q |
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| T |
8005417 |
ttccagatcggaattattttgaaccaatttccttccaatttattcgaaaagcctttaaccaccataaaatgaaagtgaacattcttttcttctacc---- |
8005512 |
T |
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| Q |
216 |
aatatcttgttggtacgttgcttcacaaccagcaagtgttcttcctcaattactggg |
272 |
Q |
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| T |
8005513 |
aatatcttgttggtacgttgcttcacaaccagcaagtgttcttcctcaattactggg |
8005569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 379
Target Start/End: Original strand, 8005633 - 8005676
Alignment:
| Q |
336 |
tggcaatcacaccgacccccaagtgcactgttagcgttattaat |
379 |
Q |
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| T |
8005633 |
tggcaatcacaacgacccccaagtgcactgttaacgttattaat |
8005676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 33733209 - 33733137
Alignment:
| Q |
17 |
tatagggaaaaatacaataattaacctcccttgaggtatgctcttatgtcacaaataccccctctattttacaaaaa |
93 |
Q |
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| T |
33733209 |
tatagggaaaaatacaataa----ccttgcttgaggtatgctcttacgtcacaaatacctcctctattttacaaaaa |
33733137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 9748315 - 9748245
Alignment:
| Q |
19 |
tagggaaaaatacaataattaacctcccttgaggtatgctcttatgtcacaaataccccctctattttacaaaaa |
93 |
Q |
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| T |
9748315 |
tagggaaaaatacaataa----cctcccctgaggtatgttctaatgtcaatgacaccccctctattttacaaaaa |
9748245 |
T |
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