View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_high_27 (Length: 377)
Name: NF7347_high_27
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 369
Target Start/End: Complemental strand, 36620629 - 36620276
Alignment:
| Q |
16 |
atgatgtatctgaataatttaaagagaagggaaaagcagttagcagttaccggaaatgcgatcgaaaacatctgcggcggattcaccttcaggaaagcga |
115 |
Q |
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| T |
36620629 |
atgatgtatctgaataatttaaagagaagggaaaagcagttagcagttaccggaaatgcgatcgaaaacatcggcggcggattcaccttcaggaaagcga |
36620530 |
T |
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| Q |
116 |
taaaagaatctcccgaaccgttcacgagtttctttaacaatcttcatacgctcttgaacttggaagttaccaaaatcctgttcccttacacgcgactctt |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36620529 |
taaaagaatctcccaaaccgttcacgagtttctttaacaatcttcatacgctcttgaacttggaagttaccaaaatcctgttcccttacacgcgactctt |
36620430 |
T |
|
| Q |
216 |
ctcggacgccgatcacgcgcttcttggagaaagatctaccgacttcacggagtgtggatcgggtacgggcgtaaggagagacgtagaagtagagacgcca |
315 |
Q |
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| T |
36620429 |
ctcggacgccgatcacgcgcttcttggagaaagatctaccgacttcacggagtgtggatcgggtacgggcgtaaggagagacgtagaagtagagacgcca |
36620330 |
T |
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| Q |
316 |
gtcaggggagcagccttggccggaaacgagacggcggagattggcgcgggcgtg |
369 |
Q |
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| T |
36620329 |
gtcaggggagcagccttggccggaaacgagacggtggagattggcgccggcgtg |
36620276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 74 - 324
Target Start/End: Original strand, 46969559 - 46969809
Alignment:
| Q |
74 |
cgatcgaaaacatctgcggcggattcaccttcaggaaagcgataaaagaatctcccgaaccgttcacgagtttctttaacaatcttcatacgctcttgaa |
173 |
Q |
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|||||||||||||| || || ||||| ||||||||||| |||||||||||||| || || || | |||||||||||||| | | |||||| || |||| |
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| T |
46969559 |
cgatcgaaaacatcggcagcagattctccttcaggaaaacgataaaagaatctaccaaaacgctgacgagtttctttaatagcatccatacgttcctgaa |
46969658 |
T |
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| Q |
174 |
cttggaagttaccaaaatcctgttcccttacacgcgactcttctcggacgccgatcacgcgcttcttggagaaagatctaccgacttcacggagtgtgga |
273 |
Q |
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| || || ||||||||||||||||| | | ||| ||||||||| || || || || || ||||||||||||||| | ||| |||||| || ||||| |
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| T |
46969659 |
cctgaaaattaccaaaatcctgttcacgaatacgacactcttctctaacaccaataacacgtttcttggagaaagatttggcgagttcacgaagagtgga |
46969758 |
T |
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| Q |
274 |
tcgggtacgggcgtaaggagagacgtagaagtagagacgccagtcagggga |
324 |
Q |
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|| ||| || | ||||| || ||||| ||||| | |||||| |||||||| |
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| T |
46969759 |
tctggtgcgagtataaggggaaacgtaaaagtaaacacgccaatcagggga |
46969809 |
T |
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