View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_high_29 (Length: 369)
Name: NF7347_high_29
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_high_29 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 102 - 369
Target Start/End: Complemental strand, 35702773 - 35702505
Alignment:
| Q |
102 |
aaaacctgtagcaacaacggtagttatagatccaacgaaaccgtaaacttcagaaggtttagggccatgatcagcagacaaagcagaggcagagttgttt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35702773 |
aaaacctgtagcaacaacggtagttatagatccaacaaaaccgtaaacttcagaaggtttagggccatgatcagctgacaaagcagaggcagagttgttt |
35702674 |
T |
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| Q |
202 |
ttgtcatcggaatcaagaaatgacacagttgccctccgctttcttgaaagactcagtgttcttcttggactgttcacagaccgaggactttccattctga |
301 |
Q |
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| T |
35702673 |
ttgtcatcggaatcaagaaatgacacagtcgccctccgctttcttgaaagactcagtgttcttcttggactgttgacagaccgaggactttccattctga |
35702574 |
T |
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| Q |
302 |
tccagggttgcaaatcattcaactttaattaataattataatcatat-attctaaatttacaatgtaca |
369 |
Q |
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| T |
35702573 |
tccagggttgcaaatcattcaactttaattaataattataatcatataattctaaatttacaatgtaca |
35702505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 102 - 294
Target Start/End: Complemental strand, 7955653 - 7955461
Alignment:
| Q |
102 |
aaaacctgtagcaacaacggtagttatagatccaacgaaaccgtaaacttcagaaggtttagggccatgatcagcagacaaagcagaggcagagttgttt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||| |
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| T |
7955653 |
aaaacctgtagcaacaacggtagttatagatccaacgaaaccgtaaacttcagaaggcttagggccatgatcccttgacaaaccagaggcagagttgttt |
7955554 |
T |
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| Q |
202 |
ttgtcatcggaatcaagaaatgacacagttgccctccgctttcttgaaagactcagtgttcttcttggactgttcacagaccgaggactttcc |
294 |
Q |
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| T |
7955553 |
ttatcatcggaatcgagaaatgacacagttgccctccgctttctcgatagactcagtgttcttcttggactgttgacagaccgaggactttcc |
7955461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 35702986 - 35702925
Alignment:
| Q |
10 |
aagaatataactattcacaaaggaaaacgaacaaagtataaat-aacaaaatgccacaggaa |
70 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||| || ||||||||||||||| |
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| T |
35702986 |
aagaaaataactattcacaaaggaaaatgaacaaagtataaataaaaaaaatgccacaggaa |
35702925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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