View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7347_high_31 (Length: 357)

Name: NF7347_high_31
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7347_high_31
NF7347_high_31
[»] chr1 (10 HSPs)
chr1 (148-353)||(10983784-10983989)
chr1 (148-353)||(10914859-10915064)
chr1 (155-342)||(11004664-11004851)
chr1 (155-353)||(11028249-11028447)
chr1 (155-353)||(11011160-11011358)
chr1 (155-353)||(11007998-11008196)
chr1 (155-353)||(11033451-11033649)
chr1 (241-353)||(10974516-10974628)
chr1 (155-350)||(10903699-10903894)
chr1 (155-204)||(9464534-9464583)
[»] chr4 (4 HSPs)
chr4 (18-148)||(30950606-30950736)
chr4 (18-150)||(30945900-30946032)
chr4 (18-149)||(48702227-48702358)
chr4 (18-148)||(48697538-48697668)
[»] chr6 (1 HSPs)
chr6 (18-148)||(27879133-27879263)
[»] chr2 (2 HSPs)
chr2 (18-148)||(5199061-5199191)
chr2 (59-130)||(34614229-34614301)
[»] chr5 (1 HSPs)
chr5 (18-149)||(29585696-29585827)
[»] chr3 (1 HSPs)
chr3 (18-148)||(2817657-2817788)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 148 - 353
Target Start/End: Complemental strand, 10983989 - 10983784
Alignment:
Q  148 agttgtcaccattggtaggattcaccatgttaatgtggtacaccttattggtttttgcatggagggttcaaaacgtgttcttatatatgagttcatgcca 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  10983989 agttgtcaccattggtaggattcaccatgttaatgtggtacaccttattggtttttgcgtggagggttcaaaacgtgttcttatatatgaattcatgcca 10983890  T
Q  248 aatgggtcattggaaaaatacatattttctcatattgaagagagtagttttttgagttgtgaaaaattgcatgccatttctcttggagtggctcgtggca 347  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||| ||  ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10983889 aatgggtcactggaaaaatacatattttctcataatgaagagagtaattccttgagttgtgaaaaattgcatgccatttctcttggggtggctcgtggca 10983790  T
Q  348 ttgagt 353  Q
    ||||||    
T  10983789 ttgagt 10983784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 148 - 353
Target Start/End: Complemental strand, 10915064 - 10914859
Alignment:
Q  148 agttgtcaccattggtaggattcaccatgttaatgtggtacaccttattggtttttgcatggagggttcaaaacgtgttcttatatatgagttcatgcca 247  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  10915064 agttgtcaccatcggtaggattcaccatgttaatgtggcacaccttattggtttttgtgtggagggttcaaaacgtgttcttatatatgaattcatgcca 10914965  T
Q  248 aatgggtcattggaaaaatacatattttctcatattgaagagagtagttttttgagttgtgaaaaattgcatgccatttctcttggagtggctcgtggca 347  Q
    ||||| ||| | ||||||||||||||||||||||   |||||| |  ||  || ||||| ||| ||||| || | |||||||||||||||||||||||||    
T  10914964 aatggatcactcgaaaaatacatattttctcatacaaaagagaattattccttaagttgcgaacaattgtattcaatttctcttggagtggctcgtggca 10914865  T
Q  348 ttgagt 353  Q
    ||||||    
T  10914864 ttgagt 10914859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 155 - 342
Target Start/End: Original strand, 11004664 - 11004851
Alignment:
Q  155 accattggtaggattcaccatgttaatgtggtacaccttattggtttttgcatggagggttcaaaacgtgttcttatatatgagttcatgccaaatgggt 254  Q
    ||||||||||||||||||||||| ||||||||||| || ||||| |||||  |||||||||||||||||| |||||||||||| |||||||||||||| |    
T  11004664 accattggtaggattcaccatgtcaatgtggtacaactcattggattttgtgtggagggttcaaaacgtgctcttatatatgaattcatgccaaatggat 11004763  T
Q  255 cattggaaaaatacatattttctcatattgaagagagtagttttttgagttgtgaaaaattgcatgccatttctcttggagtggctcg 342  Q
    || ||||||||||||||||||||| ||||||||||||||  | |||||||||| |||||||| |||||||||||||||| || |||||    
T  11004764 cactggaaaaatacatattttctcttattgaagagagtaactctttgagttgtaaaaaattgtatgccatttctcttggtgtagctcg 11004851  T

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Target: chr1; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 155 - 353
Target Start/End: Original strand, 11028249 - 11028447
Alignment:
Q  155 accattggtaggattcaccatgttaatgtggtacaccttattggtttttgcatggagggttcaaaacgtgttcttatatatgagttcatgccaaatgggt 254  Q
    ||||||||||||||||||||| ||||||||||||| || ||||||||||   ||||||||||||||| || |||||||||||| || ||||||||||| |    
T  11028249 accattggtaggattcaccatcttaatgtggtacaactcattggtttttatgtggagggttcaaaacatgctcttatatatgaatttatgccaaatggat 11028348  T
Q  255 cattggaaaaatacatattttctcatattgaagagagtagttttttgagttgtgaaaaattgcatgccatttctcttggagtggctcgtggcattgagt 353  Q
     | | |||||||| ||||||||||||||||||||||||| || |||| |||| |||||||||||||| |||||||||||||| ||| | ||||||||||    
T  11028349 tactcgaaaaatatatattttctcatattgaagagagtaattatttgggttgcgaaaaattgcatgctatttctcttggagttgcttgaggcattgagt 11028447  T

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Target: chr1; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 155 - 353
Target Start/End: Complemental strand, 11011358 - 11011160
Alignment:
Q  155 accattggtaggattcaccatgttaatgtggtacaccttattggtttttgcatggagggttcaaaacgtgttcttatatatgagttcatgccaaatgggt 254  Q
    |||||||||||||||||||||||||||||||| || || |||||||||||  |||| |||||||||||||||||||||||||| |||||||||||||| |    
T  11011358 accattggtaggattcaccatgttaatgtggtgcagctcattggtttttgtgtggaaggttcaaaacgtgttcttatatatgaattcatgccaaatggat 11011259  T
Q  255 cattggaaaaatacatattttctcatattgaagagagtagttttttgagttgtgaaaaattgcatgccatttctcttggagtggctcgtggcattgagt 353  Q
    || | ||||||||||||||||||||||   |||||| |  ||  || ||||| ||| ||||| || | |||||||||||||||||||||||||||||||    
T  11011258 cacttgaaaaatacatattttctcatacaaaagagaattattccttaagttgcgaacaattgtattcaatttctcttggagtggctcgtggcattgagt 11011160  T

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Target: chr1; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 155 - 353
Target Start/End: Complemental strand, 11008196 - 11007998
Alignment:
Q  155 accattggtaggattcaccatgttaatgtggtacaccttattggtttttgcatggagggttcaaaacgtgttcttatatatgagttcatgccaaatgggt 254  Q
    ||||||||||||||||||||||||||||||||||| || |||||||| ||  |||| ||||||||||||||||| |||||||| || ||||||||||| |    
T  11008196 accattggtaggattcaccatgttaatgtggtacaactcattggtttctgtgtggaaggttcaaaacgtgttctgatatatgaatttatgccaaatggat 11008097  T
Q  255 cattggaaaaatacatattttctcatattgaagagagtagttttttgagttgtgaaaaattgcatgccatttctcttggagtggctcgtggcattgagt 353  Q
    || | ||||||||||||||||||||||  ||||||| |  ||  |||||||| ||| ||||| || | ||||| |||||||||||||||||||||||||    
T  11008096 cactagaaaaatacatattttctcataccgaagagaattattccttgagttgcgaacaattgtattcaatttcacttggagtggctcgtggcattgagt 11007998  T

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Target: chr1; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 155 - 353
Target Start/End: Complemental strand, 11033649 - 11033451
Alignment:
Q  155 accattggtaggattcaccatgttaatgtggtacaccttattggtttttgcatggagggttcaaaacgtgttcttatatatgagttcatgccaaatgggt 254  Q
    |||||||||||||| |||||||||||||||||||| || |||||||||||  |||| ||||||||||||||||| |||||||| || ||||||||||| |    
T  11033649 accattggtaggatccaccatgttaatgtggtacaactcattggtttttgtgtggaaggttcaaaacgtgttctgatatatgaatttatgccaaatggat 11033550  T
Q  255 cattggaaaaatacatattttctcatattgaagagagtagttttttgagttgtgaaaaattgcatgccatttctcttggagtggctcgtggcattgagt 353  Q
    || | |||||||||||||||||||||| |||||| | |  ||  |||||||| ||| ||||| || | |||||||||||||||||||| ||||||||||    
T  11033549 cactcgaaaaatacatattttctcataatgaagaaaattattccttgagttgcgaacaattgtattcaatttctcttggagtggctcgaggcattgagt 11033451  T

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Target: chr1; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 241 - 353
Target Start/End: Complemental strand, 10974628 - 10974516
Alignment:
Q  241 catgccaaatgggtcattggaaaaatacatattttctcatattgaagagagtagttttttgagttgtgaaaaattgcatgccatttctcttggagtggct 340  Q
    |||||||||||||| | |||||||||||||||||||||| ||||||||||||| ||  ||||||||||||||||||||||||||||||||||| ||||||    
T  10974628 catgccaaatgggtaactggaaaaatacatattttctcacattgaagagagtaattccttgagttgtgaaaaattgcatgccatttctcttggggtggct 10974529  T
Q  341 cgtggcattgagt 353  Q
    ||||| |||||||    
T  10974528 cgtggaattgagt 10974516  T

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Target: chr1; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 155 - 350
Target Start/End: Complemental strand, 10903894 - 10903699
Alignment:
Q  155 accattggtaggattcaccatgttaatgtggtacaccttattggtttttgcatggagggttcaaaacgtgttcttatatatgagttcatgccaaatgggt 254  Q
    ||||| |||||||||||||| |||||||||||||| |||||||| |||||  |||| || ||||| |||| ||| |||||||| ||||||||||||||||    
T  10903894 accatcggtaggattcaccacgttaatgtggtacaacttattggattttgtgtggatgggtcaaagcgtgctctaatatatgaattcatgccaaatgggt 10903795  T
Q  255 cattggaaaaatacatattttctcatattgaagagagtagttttttgagttgtgaaaaattgcatgccatttctcttggagtggctcgtggcattg 350  Q
    || | ||||||||||||||||||||||   | ||  ||  ||  |||||||||||||| ||| ||||||||||| ||| ||||||||| |||||||    
T  10903794 cacttgaaaaatacatattttctcataccaaggattgtttttccttgagttgtgaaaagttgtatgccatttctgttgaagtggctcgaggcattg 10903699  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 9464583 - 9464534
Alignment:
Q  155 accattggtaggattcaccatgttaatgtggtacaccttattggtttttg 204  Q
    |||||||| | ||||||||||||||||||||| ||||| ||||| |||||    
T  9464583 accattggaacgattcaccatgttaatgtggttcacctaattggcttttg 9464534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 7e-68; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 30950606 - 30950736
Alignment:
Q  18 atggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950606 atggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaaca 30950705  T
Q  118 aaagtggctttaccactttcctgtgttcaca 148  Q
    |||||||||||||||||||||||||||||||    
T  30950706 aaagtggctttaccactttcctgtgttcaca 30950736  T

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Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 30945900 - 30946032
Alignment:
Q  18 atggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaaca 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945900 atggcagcatgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaaca 30945999  T
Q  118 aaagtggctttaccactttcctgtgttcacagt 150  Q
    |||||||||||||||||||||||||||||||||    
T  30946000 aaagtggctttaccactttcctgtgttcacagt 30946032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 48702227 - 48702358
Alignment:
Q  18 atggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaaca 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48702227 atggcagcgtgtggattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaaca 48702326  T
Q  118 aaagtggctttaccactttcctgtgttcacag 149  Q
    ||||||||||||||||||||||||||||||||    
T  48702327 aaagtggctttaccactttcctgtgttcacag 48702358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 48697538 - 48697668
Alignment:
Q  18 atggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaaca 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697538 atggcagcatgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaaca 48697637  T
Q  118 aaagtggctttaccactttcctgtgttcaca 148  Q
    |||||||||||||||||||||||||||||||    
T  48697638 aaagtggctttaccactttcctgtgttcaca 48697668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 27879133 - 27879263
Alignment:
Q  18 atggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27879133 atggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaaca 27879232  T
Q  118 aaagtggctttaccactttcctgtgttcaca 148  Q
    |||||||||||||||||||||||||| ||||    
T  27879233 aaagtggctttaccactttcctgtgtccaca 27879263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 5199061 - 5199191
Alignment:
Q  18 atggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaaca 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5199061 atggcagcgtgtggattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaaca 5199160  T
Q  118 aaagtggctttaccactttcctgtgttcaca 148  Q
    |||||||||||||||||||||| ||||||||    
T  5199161 aaagtggctttaccactttcctatgttcaca 5199191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 34614229 - 34614301
Alignment:
Q  59 atgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaa-gtggctttac 130  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||||||| ||||||||||    
T  34614229 atgtaaacatagaaattacatgctaacatgttttactgccatgtgacaacaattcaacaaaaggtggctttac 34614301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 29585696 - 29585827
Alignment:
Q  18 atggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaaca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||    
T  29585696 atggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacataaaaactacatgccaacatgttttactgccatgtgataacaattcaaca 29585795  T
Q  118 aaagtggctttaccactttcctgtgttcacag 149  Q
    ||||||||||||||||||||||||||||||||    
T  29585796 aaagtggctttaccactttcctgtgttcacag 29585827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 2817657 - 2817788
Alignment:
Q  18 atggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaaca 117  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  2817657 atggcagcgtgtgaattttcaactttgcatagtaacttcccatgtgaacatagaaattacatgccaacatattttactgccatgtgataacaattcaaca 2817756  T
Q  118 aaagtggcttta-ccactttcctgtgttcaca 148  Q
    ||||||||||||  ||||||||||||||||||    
T  2817757 aaagtggctttatgcactttcctgtgttcaca 2817788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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