View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7347_high_32 (Length: 340)
Name: NF7347_high_32
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_high_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 130 - 324
Target Start/End: Original strand, 25727346 - 25727540
Alignment:
| Q |
130 |
gtctcaaatattcaaaaggttagaacaattataattggtcaaaaaccaagcacttatataaaggagctaagctaaaggtctatctactagcacattccta |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25727346 |
gtctcaaatattcaaaaggttagaacaattataattggtcaaaaaccaagcacttatataaaggagctaagctaaaggtctatctactagctcattccta |
25727445 |
T |
|
| Q |
230 |
attatagagatataatacattatcaagatgttgaaacttctcttctttattctttcatttttcattggtgttaatgggaagcactttgtgcttgt |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25727446 |
attatagagatataatacattatcaagatgttgaaacttctcttctttattctttcatttttcattggtgttaatgggaagcactttgtgcttgt |
25727540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 25727228 - 25727285
Alignment:
| Q |
12 |
gaatatatcataatacaagtgtatccattttttattgaggcaattacacaagtgtatc |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25727228 |
gaatatatcataatacaagtgtatccattttttattgaggcaattacacaagtgtatc |
25727285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 130 - 266
Target Start/End: Complemental strand, 1801931 - 1801800
Alignment:
| Q |
130 |
gtctcaaatattcaaaaggttagaacaattataattggtcaaaaaccaagcacttatataaaggagctaagctaaaggtctatctactagcacattccta |
229 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||| |||||||||||| || |||| |||||||| |
|
|
| T |
1801931 |
gtctccaatattcaaaaggttagaacatttataattggtcaatgaccaaacacatatataaaggag-----ctaaaggtctatgtattagctcattccta |
1801837 |
T |
|
| Q |
230 |
attatagagatataatacattatcaagatgttgaaac |
266 |
Q |
| |
|
|| |||||||||||||| |||||||| ||||| |||| |
|
|
| T |
1801836 |
atcatagagatataatatattatcaacatgtttaaac |
1801800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 1777732 - 1777674
Alignment:
| Q |
266 |
cttctcttctttattctttcatttttcattggtgttaatgggaagcactttgtgcttgt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1777732 |
cttctcttctttattctttcatttttcattggtgctaatgggaagcactttgtgcttgt |
1777674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 1801776 - 1801718
Alignment:
| Q |
266 |
cttctcttctttattctttcatttttcattggtgttaatgggaagcactttgtgcttgt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1801776 |
cttctcttctttattctttcatttttcattggtgctaatgggaagcactttgtgcttgt |
1801718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 266
Target Start/End: Complemental strand, 1785117 - 1784993
Alignment:
| Q |
130 |
gtctcaaatattcaaaaggttagaacaattataattggtcaaaaaccaa--gcacttatataaaggagctaagctaaaggtctatctactagcacattcc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||| |||||| |
|
|
| T |
1785117 |
gtctcaaatattcaaaaggttagaacaattataattggtcaaagaccaattgcacatata--------------taaaggtctatctactagctcattcc |
1785032 |
T |
|
| Q |
228 |
taattatagagatataatacattatcaagatgttgaaac |
266 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||| |||| |
|
|
| T |
1785031 |
taatcatagagatataatatattatcaatatgtttaaac |
1784993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 1777815 - 1777761
Alignment:
| Q |
207 |
gtctatctactagcacattcctaattatagagatataatacattatcaagatgtt |
261 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
1777815 |
gtctatctaatagctcattcctaattatagagatataatatattattaatatgtt |
1777761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 1784966 - 1784908
Alignment:
| Q |
266 |
cttctcttctttattctttcatttttcattggtgttaatgggaagcactttgtgcttgt |
324 |
Q |
| |
|
||||||||||| ||||||||||||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
1784966 |
cttctcttcttcattctttcattttctgttgatgttaatggaaagcactttgtgcttgt |
1784908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University