View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_high_38 (Length: 283)
Name: NF7347_high_38
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_high_38 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 13 - 283
Target Start/End: Original strand, 6316375 - 6316645
Alignment:
| Q |
13 |
atggacatcacactcaaggcagaggcatgaaatcaacacataaatcacaattaaaatgatttatccaaccatattagttaaaaaatgagccaccgttttg |
112 |
Q |
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| T |
6316375 |
atggacattacactcaaggcagaggcatgaaatcaacacataaatcacaattaaaatgatttatccaaccatattagttaaaaaatgagccaccgttttg |
6316474 |
T |
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| Q |
113 |
tacatatcttgcaacataaggttgtttattaccgatggttttattagttatctacattcagatctctgctggaaactaaagattcaaagagtaagagtat |
212 |
Q |
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| T |
6316475 |
tacatatcttgcaacataaggttgtttattaccgatggttttattagttatctacattcagatctctgctggaaactaaagattcaaagagtaagagtat |
6316574 |
T |
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| Q |
213 |
ggatatatctatcaatcatcacccaccaaatcaaacagagatatcatatcagactttataaataggaaact |
283 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6316575 |
ggatatatctatcaatcatcacccaccaaatcaagcagagatatcatatcagactttataaataggaaact |
6316645 |
T |
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