View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_high_40 (Length: 274)
Name: NF7347_high_40
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 10035267 - 10035137
Alignment:
| Q |
15 |
ttattctcgacgagtatatgcaagacgcacaaccactcgcggcaaggaaagggaaacaatacaacaaggtgccgcctatatgcgtgacacctccacccaa |
114 |
Q |
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| T |
10035267 |
ttattctcgacgagtatatgcaagacgcacaaccactcgcggcaaggaaagggaaacaatacaacaaggtgccgcctatatgcgtgacacctccacccaa |
10035168 |
T |
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| Q |
115 |
gaagaaaccaaccacaaaacccaacaaaggc |
145 |
Q |
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| T |
10035167 |
gaagaaaccaaccacaaaacccaacaaaggc |
10035137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 10095636 - 10095506
Alignment:
| Q |
15 |
ttattctcgacgagtatatgcaagacgcacaaccactcgcggcaaggaaagggaaacaatacaacaaggtgccgcctatatgcgtgacacctccacccaa |
114 |
Q |
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| T |
10095636 |
ttattctcgacgagtatatgcaagacgcacaaccactcgcggcaagaaaagggaaacaatacaacaaggtgccgcctatatgcgtgacacctccacccaa |
10095537 |
T |
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| Q |
115 |
gaagaaaccaaccacaaaacccaacaaaggc |
145 |
Q |
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| T |
10095536 |
gaagaaaccaaccacaaaacccaacaaaggc |
10095506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 10035137 - 10035071
Alignment:
| Q |
190 |
ccagcctcactgcctaaaatccaaacaggcgcacatgcccagcaacaccaaacctgcagcatgacag |
256 |
Q |
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| T |
10035137 |
ccagcctcactgcctaaaatccaaacaggcgcacatgcccagcaacaccaaacctgcagcatgacag |
10035071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 10095506 - 10095440
Alignment:
| Q |
190 |
ccagcctcactgcctaaaatccaaacaggcgcacatgcccagcaacaccaaacctgcagcatgacag |
256 |
Q |
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| T |
10095506 |
ccagcctcactgcctaaaatccaaacaggcgcacatgcccagcaacaccaaacctgcagcatgacag |
10095440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 6902031 - 6901999
Alignment:
| Q |
14 |
attattctcgacgagtatatgcaagacgcacaa |
46 |
Q |
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| T |
6902031 |
attattctcgtcgagtatatgcaagacgcacaa |
6901999 |
T |
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