View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_high_43 (Length: 265)
Name: NF7347_high_43
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 8e-76; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 30611385 - 30611242
Alignment:
| Q |
18 |
caagcaactaattgagtaaaataaaactattttctagtaatttttcataagcaaagaggaaacaaatatggctcaatttatcaagtttgttagtgttatc |
117 |
Q |
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| T |
30611385 |
caagcaactaattgagtaaaataaaactattttctagtaatttttcataagcaaagaggaaacaaatatggctcaatttatcaagtttgttagtgttatc |
30611286 |
T |
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| Q |
118 |
attctcttaatatccctattttttgtcgtagtcaacggtggtac |
161 |
Q |
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| T |
30611285 |
attctcttaatatccctattttttgtcgtagtcaacggtggtac |
30611242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 30676533 - 30676439
Alignment:
| Q |
49 |
ttctagtaatttttcataagcaaagaggaaacaaatatggctcaatttatcaagtttgttagtgttatcattctcttaatatccctattttttgt |
143 |
Q |
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| T |
30676533 |
ttctattaatttgtcataagcaaagagggaaaaaatatggctgaatttatcaaatttgttagtgttatcattctcttaatttccctatttgttgt |
30676439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 29831610 - 29831520
Alignment:
| Q |
70 |
aaagaggaaacaaatatggctcaatttatcaagtttgttagtgttatcattctcttaatatccctattttttgtcgtagtcaacggtggtac |
161 |
Q |
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| T |
29831610 |
aaagaggaaa-aaatatggctgaatttatcaactttgttagtgttatcattctcttgatttccctattttttgtcatagtcaatggtggtac |
29831520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 161
Target Start/End: Complemental strand, 30673917 - 30673797
Alignment:
| Q |
41 |
aaactattttctagtaatttttcataagc-aaagaggaaacaaatatggctcaatttatcaagtttgttagtgttatcattctcttaatatccctatttt |
139 |
Q |
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| T |
30673917 |
aaacaattttctagtcatttgacatatgctaaagaggaaa-aaatatggctgaatttatcaaatttgttagtgttatcattatctcaatttccctatgtt |
30673819 |
T |
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| Q |
140 |
ttgtcgtagtcaacggtggtac |
161 |
Q |
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| T |
30673818 |
ttgtcatagtcaatggtggtac |
30673797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 246
Target Start/End: Complemental strand, 30611188 - 30611157
Alignment:
| Q |
215 |
gtaacatgcctttgtttgtgttgtttatatca |
246 |
Q |
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| T |
30611188 |
gtaacatgcctttgtttgtgttgtttatatca |
30611157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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