View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_high_50 (Length: 237)
Name: NF7347_high_50
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 36950528 - 36950323
Alignment:
| Q |
13 |
aatataaataattgtgtttacgtactataatttcctgatctgtactagctaacatttatccttttctactgctttacatgcaatgtttttatcttggtca |
112 |
Q |
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| T |
36950528 |
aatataaataattatgtttatgtactataatttcctgatctgtacta----acatttatctttttctattgctttacatgcaatgtttgtatcttggtca |
36950433 |
T |
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| Q |
113 |
tttcatttgttgtcatttacaacaaatggatggaggttggtttggataaagattggtttaaagggaggaaagtttggtttaaatcaattatgtgtacaag |
212 |
Q |
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| T |
36950432 |
tttcatttgttgtgatttacaacaaatggatggaggttggtttggatgaagattggtttaaagggaggcaagtttggtttaaatcaattatgtgtacaag |
36950333 |
T |
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| Q |
213 |
atgttcatta |
222 |
Q |
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|||||||||| |
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| T |
36950332 |
atgttcatta |
36950323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 33292823 - 33292881
Alignment:
| Q |
62 |
taacatttatccttttctactgctttacatgcaatgtttttatcttggtcatttcattt |
120 |
Q |
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| T |
33292823 |
taacatttatcattttctattgttttacatgcaatggttgtatctaggtcatttcattt |
33292881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 13704354 - 13704299
Alignment:
| Q |
63 |
aacatttatccttttctactgctttacatgcaatgtttttatcttggtcatttcat |
118 |
Q |
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| T |
13704354 |
aacatttatcgttttatattggtttacatgcaatgtttatatctaggtcatttcat |
13704299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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