View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_high_7 (Length: 619)
Name: NF7347_high_7
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 20 - 605
Target Start/End: Complemental strand, 32347038 - 32346470
Alignment:
| Q |
20 |
tccagtataatccttaaaaaaccgtaccttacaaacttaggtttctaacttctagacattctaaatttgtaacatctctcatttcatttctatcacgtgc |
119 |
Q |
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| T |
32347038 |
tccagtataatcctcaaaaaaccgtaccttacaaacttaggtttctaacttctagacattctaaatttgtaacatctctcatttcatttctatcacgtgc |
32346939 |
T |
|
| Q |
120 |
atggtgtaacggtggatagaaagaaaataatcaaacccttgtga--tatactatcttcatagcctaatacctattctctacaatattttatgtaagcatt |
217 |
Q |
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| T |
32346938 |
atggtgtaacggtggatagaaagaaaataatcaaacccttgtgatatatactatcttcatagcctaatacctattctctaca--attttatgtaagcatt |
32346841 |
T |
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| Q |
218 |
tcnnnnnnnnngtgttcaaaatactcttcgataaaacactctagtacttctaattttataagtttgatggtgtaaagaaattatgttgttaatt-aatat |
316 |
Q |
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| T |
32346840 |
tcttattttttttgttcaaaatactctttgataaaacactc-----------------taagtttgatggtgtaaagaaattatgttgttaattaaatat |
32346758 |
T |
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| Q |
317 |
attgagatggtgttttcatacttgctagaattgaatggcttgcaccaaagtgtgaggtgtatattgacgaagctctcaaacttattttcgacacttaatt |
416 |
Q |
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| T |
32346757 |
attgagatggtgttttcatacttgctagaattgaatggcttgcaccaaagtgtgaggtgtatattgacgaagctct-taatttattttcgacactcaatt |
32346659 |
T |
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| Q |
417 |
ataccgtaaacttttaag-tatattatggaaaattatgtatgtcatcctttaagtttaacnnnnnnnaggaaataatgtcacgaactattaaatttatag |
515 |
Q |
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| T |
32346658 |
ataccgtaaacttttaagttatattatggaaaattatgtatgtcatcctttaagtttaac-tttttcaggaaataatgtcacgaactattaagtttatag |
32346560 |
T |
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| Q |
516 |
ttcaacctactttgcaagtggagtagtttaatgacattagttatgtggagaaacatttattaccatgttttcataggttgtacgtgtgtg |
605 |
Q |
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| T |
32346559 |
ttcaagctactttgcaagtggggtagtttaatgacattagttatgtggagaaacatttattaccatgttttcataggttgtacgtgtgtg |
32346470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 6992075 - 6992120
Alignment:
| Q |
337 |
cttgctagaattgaatggcttgcaccaaagtgtgaggtgtatattg |
382 |
Q |
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| T |
6992075 |
cttgcaagaattgaatgtcttgcacaaaagtgtgaggtgcatattg |
6992120 |
T |
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