View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7347_high_9 (Length: 581)
Name: NF7347_high_9
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 16 - 564
Target Start/End: Complemental strand, 10442521 - 10441973
Alignment:
| Q |
16 |
atgaaggtgtgttagatgcatcagtagtcacagacacagaataaggcataggtgt-catctcagtttcagactgatgtagggctttgcttgaattagcag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||| |||||||||||||||||||||||| |
|
|
| T |
10442521 |
atgaaggtgtgttagatgcatcagtagtcacagacacagaataaggcataggtgtgccacccaa---cag------gtagggctttgcttgaattagcag |
10442431 |
T |
|
| Q |
115 |
gactatcttgcctttgaattgattctgtcaaacttctcctgcaaactggggccaccgaagaacttagcaccccagaatattgtgactgnnnnnnnnnn-- |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10442430 |
gactatcttgcctttgaattgattccgtcaaacttctcctgcaaactggggccaccgaagaacttagcaccccagaatattgtgactgaaaaaaaaaaaa |
10442331 |
T |
|
| Q |
213 |
------tgtgtgattcaaagatttaaaacaaacattaaattcattaataagtagataatttgaatatgtatataacctgcataatagcttgatcactgct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10442330 |
ataaagtgtgtgattcaaagatttaaaacaaacattaaattcattaataagtagataatttgaatatgtatataacctgcataatagcttgatcactgct |
10442231 |
T |
|
| Q |
307 |
tatctgctcttctgccctgccagatgtagagggggacttgatctgcaaatcctgaaatgataaaaacttataagggcatggacatgcacagcttagataa |
406 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10442230 |
tatctgctcttctgcccagccagatgtggagggggacttgatctgcaaatcctgaaataataaaaacttataagagcatggacatgcacagcttagataa |
10442131 |
T |
|
| Q |
407 |
gcatatttgttctgcatacagctcaagttcttgtcaccaaatggctgtttcactgccactaatggtgatcaacatatacatatacacctatgattacatt |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10442130 |
gcatatttgttctgcatacagctcaagttcttgtcaccaaatggctgtttcactggcactaatggtgctcaacatatacatatacacctatgattacatt |
10442031 |
T |
|
| Q |
507 |
ctttaaagcgaaatgaatcaaaacttcataatactatttaatggaaagcagtccattt |
564 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10442030 |
ctttaaagcgaaatgtatcaaaacttcataatactatgtaatggaaagcagtccattt |
10441973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University