View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7347_low_13 (Length: 574)

Name: NF7347_low_13
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7347_low_13
NF7347_low_13
[»] chr6 (17 HSPs)
chr6 (219-558)||(24587353-24587693)
chr6 (13-183)||(24587146-24587316)
chr6 (320-424)||(17750896-17750999)
chr6 (329-424)||(551206-551301)
chr6 (353-424)||(10521890-10521961)
chr6 (354-424)||(12343127-12343197)
chr6 (316-389)||(7384477-7384550)
chr6 (359-424)||(13043489-13043554)
chr6 (324-389)||(24975749-24975814)
chr6 (365-424)||(24618642-24618701)
chr6 (317-386)||(24618591-24618660)
chr6 (354-407)||(31654332-31654385)
chr6 (316-389)||(17750978-17751051)
chr6 (333-389)||(12343176-12343232)
chr6 (317-389)||(13043533-13043605)
chr6 (366-424)||(2315345-2315403)
chr6 (354-386)||(10521876-10521908)
[»] chr8 (30 HSPs)
chr8 (317-422)||(5667087-5667192)
chr8 (324-424)||(35441010-35441110)
chr8 (324-424)||(5033158-5033258)
chr8 (324-424)||(8243429-8243529)
chr8 (324-424)||(10086754-10086854)
chr8 (320-424)||(34229634-34229738)
chr8 (323-420)||(8796418-8796515)
chr8 (324-424)||(33841632-33841732)
chr8 (320-398)||(43844536-43844614)
chr8 (324-424)||(45191168-45191268)
chr8 (317-389)||(5033237-5033309)
chr8 (317-389)||(33841581-33841653)
chr8 (317-389)||(35440959-35441031)
chr8 (354-420)||(6296632-6296698)
chr8 (324-397)||(2581822-2581895)
chr8 (317-424)||(35031655-35031763)
chr8 (355-417)||(4958627-4958689)
chr8 (354-412)||(39850982-39851040)
chr8 (324-389)||(5667173-5667238)
chr8 (317-386)||(45191117-45191186)
chr8 (329-389)||(6296681-6296741)
chr8 (331-389)||(10086833-10086891)
chr8 (324-390)||(22649842-22649908)
chr8 (372-416)||(34541852-34541896)
chr8 (318-389)||(4958675-4958745)
chr8 (354-389)||(34229717-34229752)
chr8 (354-388)||(39139838-39139872)
chr8 (317-378)||(1880229-1880289)
chr8 (316-389)||(8243386-8243450)
chr8 (388-420)||(31159912-31159944)
[»] chr1 (54 HSPs)
chr1 (318-424)||(32540789-32540895)
chr1 (324-424)||(29179638-29179738)
chr1 (324-424)||(37155043-37155143)
chr1 (324-424)||(48993958-48994058)
chr1 (323-424)||(17127605-17127706)
chr1 (324-424)||(5995366-5995466)
chr1 (323-424)||(1091585-1091686)
chr1 (329-420)||(44706829-44706920)
chr1 (354-424)||(741543-741613)
chr1 (330-424)||(9157313-9157407)
chr1 (324-424)||(48498412-48498512)
chr1 (354-424)||(29371395-29371465)
chr1 (320-424)||(4608989-4609093)
chr1 (324-416)||(36290456-36290548)
chr1 (354-424)||(15220838-15220908)
chr1 (334-424)||(45728294-45728384)
chr1 (355-424)||(46333987-46334056)
chr1 (317-389)||(48993907-48993979)
chr1 (354-424)||(34062236-34062306)
chr1 (330-403)||(21630045-21630118)
chr1 (317-398)||(28395627-28395708)
chr1 (355-424)||(33219601-33219670)
chr1 (317-389)||(5995445-5995517)
chr1 (317-389)||(49444903-49444975)
chr1 (322-389)||(33219649-33219716)
chr1 (354-424)||(38674546-38674614)
chr1 (354-424)||(8337892-8337962)
chr1 (316-389)||(15220887-15220960)
chr1 (317-389)||(29179587-29179659)
chr1 (324-391)||(46931994-46932061)
chr1 (365-424)||(47303433-47303492)
chr1 (353-424)||(48604988-48605059)
chr1 (354-424)||(49444954-49445022)
chr1 (354-412)||(5694942-5695000)
chr1 (381-424)||(1819530-1819573)
chr1 (330-389)||(17127567-17127626)
chr1 (334-389)||(32540755-32540810)
chr1 (354-389)||(4609072-4609107)
chr1 (317-380)||(9884831-9884894)
chr1 (316-383)||(46932064-46932130)
chr1 (323-424)||(19711221-19711320)
chr1 (315-380)||(6539664-6539729)
chr1 (320-389)||(29371444-29371513)
chr1 (376-424)||(28928820-28928868)
chr1 (317-389)||(46333945-46334008)
chr1 (354-389)||(1819516-1819551)
chr1 (354-389)||(8337878-8337913)
chr1 (354-389)||(47303471-47303506)
chr1 (354-388)||(32157602-32157636)
chr1 (317-379)||(36381582-36381644)
chr1 (317-387)||(48823884-48823945)
chr1 (356-389)||(45728363-45728396)
chr1 (323-379)||(31342259-31342315)
chr1 (354-382)||(48604974-48605002)
[»] chr4 (41 HSPs)
chr4 (329-424)||(23444310-23444405)
chr4 (324-424)||(6271699-6271799)
chr4 (324-420)||(51265442-51265538)
chr4 (324-416)||(30861823-30861915)
chr4 (317-424)||(35682156-35682263)
chr4 (319-424)||(26186057-26186160)
chr4 (341-424)||(47661856-47661939)
chr4 (353-424)||(55090037-55090108)
chr4 (354-424)||(42375037-42375107)
chr4 (354-424)||(40789206-40789276)
chr4 (315-389)||(42375086-42375160)
chr4 (354-424)||(47404626-47404696)
chr4 (323-392)||(3862619-3862688)
chr4 (323-392)||(3871376-3871445)
chr4 (354-422)||(53954637-53954705)
chr4 (354-424)||(52028576-52028646)
chr4 (316-389)||(6271778-6271851)
chr4 (317-389)||(47661918-47661990)
chr4 (317-424)||(44379920-44380027)
chr4 (329-420)||(47762610-47762701)
chr4 (317-389)||(23444259-23444331)
chr4 (376-424)||(50384146-50384194)
chr4 (317-389)||(51265521-51265593)
chr4 (317-389)||(53954686-53954758)
chr4 (317-379)||(30709986-30710048)
chr4 (324-389)||(35682242-35682307)
chr4 (376-424)||(25818414-25818462)
chr4 (376-420)||(45591455-45591499)
chr4 (317-389)||(47404584-47404647)
chr4 (353-389)||(55090022-55090058)
chr4 (354-389)||(26186043-26186078)
chr4 (331-381)||(5048884-5048934)
chr4 (339-389)||(47762684-47762734)
chr4 (376-424)||(24006111-24006159)
chr4 (341-389)||(25818387-25818435)
chr4 (354-424)||(31430502-31430569)
chr4 (317-389)||(50384104-50384167)
chr4 (353-385)||(55089903-55089935)
chr4 (354-389)||(52028625-52028660)
chr4 (354-424)||(31532730-31532800)
chr4 (380-424)||(28693964-28694008)
[»] chr3 (37 HSPs)
chr3 (329-424)||(47492088-47492183)
chr3 (330-424)||(33689179-33689273)
chr3 (317-424)||(30734443-30734550)
chr3 (324-420)||(51046118-51046214)
chr3 (329-424)||(43139750-43139845)
chr3 (354-424)||(30476515-30476585)
chr3 (320-424)||(18321644-18321748)
chr3 (324-424)||(41752961-41753061)
chr3 (354-424)||(47677296-47677366)
chr3 (331-420)||(30580801-30580890)
chr3 (354-424)||(29031755-29031825)
chr3 (317-389)||(45103099-45103171)
chr3 (320-420)||(55223225-55223325)
chr3 (354-424)||(1801487-1801557)
chr3 (317-389)||(1801436-1801508)
chr3 (317-389)||(41753040-41753112)
chr3 (355-424)||(50524730-50524799)
chr3 (317-389)||(51046063-51046135)
chr3 (354-424)||(49418732-49418802)
chr3 (354-420)||(50550002-50550068)
chr3 (341-389)||(47492061-47492109)
chr3 (333-400)||(39057022-39057089)
chr3 (323-389)||(50524778-50524844)
chr3 (318-389)||(21024086-21024156)
chr3 (354-389)||(29031741-29031776)
chr3 (354-389)||(30476501-30476536)
chr3 (330-389)||(30734405-30734464)
chr3 (354-389)||(33689252-33689287)
chr3 (319-374)||(39429996-39430051)
chr3 (355-389)||(18321727-18321761)
chr3 (316-357)||(1272557-1272598)
chr3 (354-407)||(39385746-39385799)
chr3 (354-394)||(1801566-1801606)
chr3 (317-381)||(7977584-7977648)
chr3 (354-382)||(27729289-27729317)
chr3 (372-424)||(30904289-30904341)
chr3 (353-389)||(55223308-55223344)
[»] scaffold0586 (2 HSPs)
scaffold0586 (330-424)||(7088-7181)
scaffold0586 (330-389)||(7050-7109)
[»] chr7 (28 HSPs)
chr7 (324-424)||(11016866-11016966)
chr7 (324-424)||(34854736-34854836)
chr7 (324-420)||(38975802-38975898)
chr7 (327-424)||(27028834-27028931)
chr7 (324-424)||(4290542-4290642)
chr7 (324-424)||(41018269-41018369)
chr7 (324-424)||(15027539-15027639)
chr7 (324-407)||(45231908-45231991)
chr7 (318-394)||(27028719-27028795)
chr7 (354-424)||(7671952-7672022)
chr7 (317-389)||(4290621-4290693)
chr7 (317-389)||(11016945-11017017)
chr7 (317-389)||(42628371-42628443)
chr7 (353-424)||(10419484-10419555)
chr7 (317-424)||(41945845-41945952)
chr7 (346-412)||(22764753-22764819)
chr7 (354-424)||(29053355-29053425)
chr7 (354-424)||(42628322-42628392)
chr7 (354-424)||(4649347-4649419)
chr7 (324-389)||(48000691-48000756)
chr7 (317-389)||(38975881-38975953)
chr7 (330-415)||(30217504-30217588)
chr7 (359-424)||(48000769-48000834)
chr7 (323-389)||(41945931-41945997)
chr7 (317-383)||(48000819-48000885)
chr7 (354-389)||(4649398-4649433)
chr7 (346-389)||(15027618-15027661)
chr7 (346-380)||(43500003-43500037)
[»] chr5 (43 HSPs)
chr5 (320-424)||(16439131-16439235)
chr5 (324-424)||(19655155-19655255)
chr5 (331-424)||(30117869-30117962)
chr5 (317-424)||(12913793-12913900)
chr5 (341-424)||(29699381-29699464)
chr5 (330-424)||(291100-291194)
chr5 (320-420)||(3180105-3180204)
chr5 (324-412)||(19598329-19598417)
chr5 (354-424)||(3899866-3899936)
chr5 (354-424)||(16971171-16971241)
chr5 (317-389)||(2953266-2953338)
chr5 (317-420)||(28818916-28819010)
chr5 (317-389)||(16971220-16971292)
chr5 (354-424)||(26662426-26662496)
chr5 (354-424)||(26934021-26934091)
chr5 (319-389)||(29699443-29699513)
chr5 (359-424)||(38134414-38134479)
chr5 (317-389)||(291173-291245)
chr5 (317-389)||(2093927-2093999)
chr5 (318-389)||(3899915-3899986)
chr5 (317-384)||(13312254-13312321)
chr5 (317-386)||(2356351-2356419)
chr5 (376-424)||(2953239-2953287)
chr5 (320-391)||(1638450-1638521)
chr5 (330-389)||(12913879-12913938)
chr5 (354-420)||(16802471-16802537)
chr5 (323-389)||(19655234-19655300)
chr5 (329-389)||(28818993-28819053)
chr5 (317-424)||(2935871-2935977)
chr5 (366-424)||(2093978-2094036)
chr5 (331-416)||(39031200-39031285)
chr5 (341-389)||(7009404-7009452)
chr5 (318-382)||(11983247-11983310)
chr5 (317-383)||(30117818-30117884)
chr5 (330-384)||(32485630-32485684)
chr5 (330-389)||(26662475-26662535)
chr5 (330-389)||(26934070-26934130)
chr5 (354-389)||(16439214-16439249)
chr5 (354-419)||(2356301-2356364)
chr5 (355-389)||(6912325-6912359)
chr5 (320-370)||(19272350-19272400)
chr5 (341-390)||(17849220-17849269)
chr5 (313-353)||(19598434-19598474)
[»] chr2 (34 HSPs)
chr2 (324-424)||(16514421-16514521)
chr2 (316-424)||(14229394-14229492)
chr2 (324-420)||(29508736-29508832)
chr2 (341-424)||(6721965-6722048)
chr2 (341-424)||(15011294-15011377)
chr2 (354-424)||(2828611-2828681)
chr2 (317-389)||(6722027-6722099)
chr2 (354-424)||(2893990-2894060)
chr2 (354-424)||(6217265-6217335)
chr2 (354-424)||(29925611-29925681)
chr2 (354-424)||(37762042-37762112)
chr2 (354-420)||(38933614-38933680)
chr2 (329-389)||(14229355-14229415)
chr2 (317-389)||(16514500-16514572)
chr2 (317-389)||(38933663-38933735)
chr2 (341-424)||(14470633-14470716)
chr2 (326-396)||(9173050-9173120)
chr2 (331-389)||(33018621-33018679)
chr2 (317-382)||(14892343-14892408)
chr2 (329-389)||(6217226-6217286)
chr2 (320-424)||(24115913-24116017)
chr2 (330-389)||(24115996-24116055)
chr2 (317-389)||(29508680-29508753)
chr2 (323-381)||(32545782-32545840)
chr2 (320-386)||(32545867-32545933)
chr2 (354-424)||(37961733-37961803)
chr2 (320-389)||(14470585-14470654)
chr2 (346-422)||(8534165-8534241)
chr2 (317-389)||(37961782-37961854)
chr2 (353-389)||(14464581-14464617)
chr2 (353-389)||(15011356-15011392)
chr2 (355-389)||(2894039-2894073)
chr2 (353-394)||(2143943-2143984)
chr2 (354-386)||(2828663-2828695)
[»] scaffold0161 (2 HSPs)
scaffold0161 (324-424)||(27261-27361)
scaffold0161 (324-389)||(27217-27282)
[»] scaffold0047 (2 HSPs)
scaffold0047 (354-424)||(63784-63854)
scaffold0047 (354-389)||(63833-63868)
[»] scaffold0016 (2 HSPs)
scaffold0016 (354-424)||(49744-49814)
scaffold0016 (317-389)||(49693-49765)
[»] scaffold1033 (2 HSPs)
scaffold1033 (379-424)||(2265-2310)
scaffold1033 (356-389)||(2289-2322)
[»] scaffold1029 (2 HSPs)
scaffold1029 (379-424)||(2265-2310)
scaffold1029 (356-389)||(2289-2322)
[»] scaffold0180 (2 HSPs)
scaffold0180 (330-389)||(19125-19184)
scaffold0180 (380-424)||(19163-19207)
[»] scaffold0481 (1 HSPs)
scaffold0481 (378-424)||(2928-2974)


Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 219 - 558
Target Start/End: Original strand, 24587353 - 24587693
Alignment:
Q  219 gattatgataagtggatactattaggataaattgttcttttattgtcatcggtatcaccaaaacatagaaaaatcgaaagaaagtattgtatgacaaagg 318  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24587353 gattatgataagtggatactataaggataaattgttcttttattgctatcggtatcaccaaaacatagaaaaatcgaaagaaagtattgtatgacaaagg 24587452  T
Q  319 gtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgaca 418  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24587453 gtagcacttaggtgacatagagttgggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctcgctttttcacaagcattgtgaca 24587552  T
Q  419 ttgtgaacacatggtccttcatgnnnnnnnttatcgtacggtacgttctttaggaaacacatgttgatgttgcggtacatgttcctcttgatgcacatga 518  Q
    ||||||||||||||||||| |||       ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24587553 ttgtgaacacatggtccttaatg-aaaaaattatcgtacggtacgttctttaggaaacacatgctgatgttgcggtacatgttcctcttgatgcacatga 24587651  T
Q  519 tacagtggcaga--tgttcttgttcaaccttccattgttgtt 558  Q
    | ||||||||||  ||||||||||||||||||||||||||||    
T  24587652 tccagtggcagatctgttcttgttcaaccttccattgttgtt 24587693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 24587146 - 24587316
Alignment:
Q  13 attctattaatatgttgcgaactgcgaattgatacttacattatatactggttcgtagtgcttttacgaattgttttgcataaattttcgttataattat 112  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24587146 attctattaatatgttgtgaactgcgaattgatacttacattacatactggttcgtagtgcttttacgaattgttttgcataaattttcgttataattat 24587245  T
Q  113 ttgaaattgtgaaccggcgaatccaattaactgaagatcaaagaaagaggaatgtctcatacaataacacc 183  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  24587246 ttgaaattgtgaaccggcgaatcaaattaactgaagatcaaagaaagaggaatgtctcataaaataacacc 24587316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 320 - 424
Target Start/End: Original strand, 17750896 - 17750999
Alignment:
Q  320 tagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacat 419  Q
    ||||||||  |||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||    
T  17750896 tagcacttgtgtgacatagagttg-atgacattggtgacattggtcaatcacaatgtcacaatgtttgtatttatctctctttcacaagcattgtgacat 17750994  T
Q  420 tgtga 424  Q
    |||||    
T  17750995 tgtga 17750999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 329 - 424
Target Start/End: Complemental strand, 551301 - 551206
Alignment:
Q  329 ggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||||||| |||||||| ||| |||||||||| ||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  551301 ggtgacatagaattggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtggcattgtga 551206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 10521961 - 10521890
Alignment:
Q  353 agtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||    
T  10521961 agtgacattggtcaatcacaatgtcataatgcttgtgtttctctctctttcataagcattgtgacattgtga 10521890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 12343127 - 12343197
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  12343127 gtgacattagtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 12343197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 7384477 - 7384550
Alignment:
Q  316 agggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||| |||| |||||    
T  7384477 agggtagcacttaggtgatatagagttggatgacattagtgacattgaccaatcacaatgtcataatgtttgtg 7384550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 424
Target Start/End: Original strand, 13043489 - 13043554
Alignment:
Q  359 attggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  13043489 attggtcaatcgaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgatattgtga 13043554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 389
Target Start/End: Original strand, 24975749 - 24975814
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||| |||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||    
T  24975749 acttgggtgacatagagttggctgacattggtgacattggtcaatcacaatgccacaatgcttgtg 24975814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 365 - 424
Target Start/End: Complemental strand, 24618701 - 24618642
Alignment:
Q  365 caatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||    
T  24618701 caatcacaatgtcacaatgcttgtgtttctctctctttcataagcattatgacattgtga 24618642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 317 - 386
Target Start/End: Original strand, 24618591 - 24618660
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgctt 386  Q
    |||||||||||  ||||||||||||||| ||||||| ||||||||| ||||||||||||||| |||||||    
T  24618591 gggtagcacttgagtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcataatgctt 24618660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 31654332 - 31654385
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaa 407  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  31654332 gtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaa 31654385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 389
Target Start/End: Complemental strand, 17751051 - 17750978
Alignment:
Q  316 agggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||||  ||||||||||||||| ||| |||  ||||||||| | |||||||||||||||||||||||    
T  17751051 agggtagcacttgtgtgacatagagttgggtgatattgatgacattggccgatcacaatgtcacaatgcttgtg 17750978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 333 - 389
Target Start/End: Complemental strand, 12343232 - 12343176
Alignment:
Q  333 acatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||| ||| ||| |||||||||| |||||||||||||||||||||||||    
T  12343232 acatagagttgggtgagattggtgacattggccaatcacaatgtcacaatgcttgtg 12343176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 13043605 - 13043533
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||| || |||||||||||||||  ||| ||| ||||||||||  ||||||||| ||||||||||||||    
T  13043605 gggtagcatttgggtgacatagagttgagtgatattggtgacattggctaatcacaatatcacaatgcttgtg 13043533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 424
Target Start/End: Complemental strand, 2315403 - 2315345
Alignment:
Q  366 aatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||  || ||||||| |||||| |||| |||||||| ||||||||||||||||    
T  2315403 aatcacaataccataatgcttatgtttcgctctctttcacaaacattgtgacattgtga 2315345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 10521876 - 10521908
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgctt 386  Q
    |||||||||| ||||||||||||||||||||||    
T  10521876 gtgacattggccaatcacaatgtcacaatgctt 10521908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 8e-41; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 317 - 422
Target Start/End: Original strand, 5667087 - 5667192
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtga 416  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||    
T  5667087 gggtagcacttgggtgacatagagttggatgacattggtgacattggtcaatcacaatgtcacaatgcttgtatttctctctctttcacaagcattatga 5667186  T
Q  417 cattgt 422  Q
    ||||||    
T  5667187 cattgt 5667192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 35441110 - 35441010
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  35441110 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 35441011  T
Q  424 a 424  Q
    |    
T  35441010 a 35441010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 5033158 - 5033258
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||||| ||||||| |||||||||  ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  5033158 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 5033257  T
Q  424 a 424  Q
    |    
T  5033258 a 5033258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 8243529 - 8243429
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||||| ||||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||    
T  8243529 acttgggtgacatagagttgggtgacattggtgacgttggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtg 8243430  T
Q  424 a 424  Q
    |    
T  8243429 a 8243429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 10086754 - 10086854
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||    
T  10086754 acttgggtgacatagaattgggtgacattagtgacattggtcaatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtgacattgtg 10086853  T
Q  424 a 424  Q
    |    
T  10086854 a 10086854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 320 - 424
Target Start/End: Original strand, 34229634 - 34229738
Alignment:
Q  320 tagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacat 419  Q
    ||||||||  ||||||||||||||| |||||||||||||||  |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||    
T  34229634 tagcacttgtgtgacatagagttgggtgacattagtgacatgagtcaatcacaatgtcagaatgcttgtgtttctctctctttcacaagcattgtgatat 34229733  T
Q  420 tgtga 424  Q
    |||||    
T  34229734 tgtga 34229738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 8796418 - 8796515
Alignment:
Q  323 cacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 420  Q
    ||||| |||||||||||||| | ||| ||| |||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  8796418 cacttgggtgacatagagttaggtgatatttgtgatattggtcaatcacaatgtcacaatgcttgtgtttctctatctttcacaagcattgtgacatt 8796515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 33841732 - 33841632
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||||| ||||||| |||||||||  |||||| |||| |||||||||||||||||||||| ||||||||||||||||||| ||||    
T  33841732 acttgggtgacatagagttgggtgacattggtgacattgaccaatcagaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacaatgtg 33841633  T
Q  424 a 424  Q
    |    
T  33841632 a 33841632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 320 - 398
Target Start/End: Complemental strand, 43844614 - 43844536
Alignment:
Q  320 tagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctct 398  Q
    ||||| || |||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||    
T  43844614 tagcaattgggtgacatagagttggatgacattggtgatattgatcaatcacaatgtcacaatgcttgtgtttctctct 43844536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 45191268 - 45191168
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||||||||| ||| |||||||||  |||||| ||||| |||||| |||||||||||||| ||||| |||||||||| |||||||    
T  45191268 acttgggtgacatagagttggatgatattggtgacattgaccaatcaaaatgttacaatgtttgtgtttctctctctttcataagcattgtggcattgtg 45191169  T
Q  424 a 424  Q
    |    
T  45191168 a 45191168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 5033309 - 5033237
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||||  |||||||||||||||||||||||||    
T  5033309 gggtagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 5033237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 33841581 - 33841653
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||||  |||||||| ||||||||||||||||    
T  33841581 gggtagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacattgtcacaatgcttgtg 33841653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 35440959 - 35441031
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||| ||||||||| ||||||| |||||||||  |||||||||||||||||||||||||    
T  35440959 gggtagcacttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 35441031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 6296632 - 6296698
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 420  Q
    |||||||||  |||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||    
T  6296632 gtgacattgaccaatcacaatgtcataatgcttgtgtttctctctctttcacaagtattgtgacatt 6296698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 324 - 397
Target Start/End: Original strand, 2581822 - 2581895
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctc 397  Q
    |||| ||||||||||| |||| |||||||  ||||||||| ||||||||||| |||||||||||||||||||||    
T  2581822 acttgggtgacatagaattgggtgacattgttgacattggccaatcacaatgccacaatgcttgtgtttctctc 2581895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 424
Target Start/End: Complemental strand, 35031763 - 35031655
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaa-tgcttgtgtttctctctttttcacaagcattgtg 415  Q
    |||||||||||||||||||||||||||  ||| ||| |||| ||||||||| |||||| ||| || ||  | | ||||||||| |||||||||||||| |    
T  35031763 gggtagcacttaggtgacatagagttgagtgatatttgtgatattggtcaaccacaatatcataagtgactttttttctctctctttcacaagcattgcg 35031664  T
Q  416 acattgtga 424  Q
    |||||||||    
T  35031663 acattgtga 35031655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 355 - 417
Target Start/End: Original strand, 4958627 - 4958689
Alignment:
Q  355 tgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgac 417  Q
    ||||||||| |||||||||||||| |||| |||||||||||||| ||||||||| ||||||||    
T  4958627 tgacattggccaatcacaatgtcataatgtttgtgtttctctctctttcacaagtattgtgac 4958689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 354 - 412
Target Start/End: Original strand, 39850982 - 39851040
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcatt 412  Q
    |||||||||| ||||||||||| ||||||| |||||||||||||| |||||||||||||    
T  39850982 gtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcatt 39851040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 389
Target Start/End: Complemental strand, 5667238 - 5667173
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||| |||||||||||||| ||||||||| |||||||||| |||| ||||||||| ||||||||||    
T  5667238 acttgggtgacatagagtttgatgacattggtgacattggccaattacaatgtcataatgcttgtg 5667173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 386
Target Start/End: Original strand, 45191117 - 45191186
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgctt 386  Q
    ||||| ||||| |||||||||||||||||||| ||| ||||||||| | |||||||||| ||||||||||    
T  45191117 gggtaacacttgggtgacatagagttggatgatattggtgacattgattaatcacaatgccacaatgctt 45191186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 6296741 - 6296681
Alignment:
Q  329 ggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||| ||||||||||||||||||||||||||| |||||| | ||||||||||| ||||||    
T  6296741 ggtgatatagagttggatgacattagtgacattagtcaattataatgtcacaatacttgtg 6296681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 10086891 - 10086833
Alignment:
Q  331 tgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||||| ||||||| |||||||||  ||||||||||||||||||| |||||    
T  10086891 tgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtg 10086833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 324 - 390
Target Start/End: Original strand, 22649842 - 22649908
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgt 390  Q
    |||| |||||||||||||||  ||||||| ||||||||||  |||||||||| ||||||||||||||    
T  22649842 acttgggtgacatagagttgagtgacattggtgacattggctaatcacaatgccacaatgcttgtgt 22649908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 34541896 - 34541852
Alignment:
Q  372 aatgtcacaatgcttgtgtttctctctttttcacaagcattgtga 416  Q
    |||| |||||||||||||||||||||| |||||||||||||||||    
T  34541896 aatgccacaatgcttgtgtttctctctctttcacaagcattgtga 34541852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 389
Target Start/End: Complemental strand, 4958745 - 4958675
Alignment:
Q  318 ggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||  ||||||||||||| ||||| |||||||||||||  ||||||||| |||||||| ||||||    
T  4958745 ggtagcacttgcgtgacatagagttagatgatattagtgacattgaccaatcacaa-gtcacaatacttgtg 4958675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 389
Target Start/End: Complemental strand, 34229752 - 34229717
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||||||||||||| ||||||||||||||    
T  34229752 gtgacattggtcaatcacaatatcacaatgcttgtg 34229717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 388
Target Start/End: Complemental strand, 39139872 - 39139838
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgt 388  Q
    ||||||||||||||||||||||||||||| |||||    
T  39139872 gtgacattggtcaatcacaatgtcacaatccttgt 39139838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 1880229 - 1880289
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtca 378  Q
    ||||||||||| ||||||||||| |||| ||||| | |||||||||  ||||||||||||||    
T  1880229 gggtagcacttgggtgacatagaattgg-tgacactggtgacattgaccaatcacaatgtca 1880289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 8243386 - 8243450
Alignment:
Q  316 agggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||| |||||||||||||||         |||||||||| |||||||||||| |||||||||||||    
T  8243386 agggtagcacttgggtgacatagagttg---------agtgacattgatcaatcacaatgccacaatgcttgtg 8243450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 420
Target Start/End: Original strand, 31159912 - 31159944
Alignment:
Q  388 tgtttctctctttttcacaagcattgtgacatt 420  Q
    ||||||||||| |||||||||||||||||||||    
T  31159912 tgtttctctctctttcacaagcattgtgacatt 31159944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 54)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 318 - 424
Target Start/End: Complemental strand, 32540895 - 32540789
Alignment:
Q  318 ggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgac 417  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||  |||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  32540895 ggtagcacttgggtgacatagaattggatgacattggtgacattgaccaatcacaatgttacaatgcttgtgtttctctctctttcacaagcattgtgac 32540796  T
Q  418 attgtga 424  Q
    |||||||    
T  32540795 attgtga 32540789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 29179738 - 29179638
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  29179738 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 29179639  T
Q  424 a 424  Q
    |    
T  29179638 a 29179638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 37155043 - 37155143
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||| | ||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  37155043 acttgggtgacatagagtttggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagtattgtgacattgtg 37155142  T
Q  424 a 424  Q
    |    
T  37155143 a 37155143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 48994058 - 48993958
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||||| ||||||| |||||||||  ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  48994058 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 48993959  T
Q  424 a 424  Q
    |    
T  48993958 a 48993958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 323 - 424
Target Start/End: Complemental strand, 17127706 - 17127605
Alignment:
Q  323 cacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgt 422  Q
    ||||| ||||| |||||||| | |||||||||||||||||  |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17127706 cacttgggtgatatagagttaggtgacattagtgacattgaccaatcaaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgt 17127607  T
Q  423 ga 424  Q
    ||    
T  17127606 ga 17127605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 5995366 - 5995466
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||| ||||||||| || ||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||    
T  5995366 acttgggtgacatagagtttgatgacattggtaacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtg 5995465  T
Q  424 a 424  Q
    |    
T  5995466 a 5995466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 323 - 424
Target Start/End: Complemental strand, 1091686 - 1091585
Alignment:
Q  323 cacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgt 422  Q
    ||||| |||||||||||||||| ||| ||| ||||| |||  ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  1091686 cacttgggtgacatagagttgggtgatattggtgactttgaccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgt 1091587  T
Q  423 ga 424  Q
    ||    
T  1091586 ga 1091585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 329 - 420
Target Start/End: Complemental strand, 44706920 - 44706829
Alignment:
Q  329 ggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 420  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||||| | |||||||||||||||||||| |||||||||||||||| ||||    
T  44706920 ggtgacatagagttgggtgacattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtggcatt 44706829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 741613 - 741543
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  741613 gtgacattggtcgatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 741543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 330 - 424
Target Start/End: Original strand, 9157313 - 9157407
Alignment:
Q  330 gtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||||||||||| ||||||| || ||||||  |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||    
T  9157313 gtgacatagagttgggtgacattggtaacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttctcaagcattgtgatattgtga 9157407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 48498412 - 48498512
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||||| |||  ||||||| |||||||||||||| |||||||||||| || ||||||||    
T  48498412 acttgggtgacatagagttgggtgacatttgtgacattggtcaatcataataccacaatgtttgtgtttctctctctttcacaagcatggtaacattgtg 48498511  T
Q  424 a 424  Q
    |    
T  48498512 a 48498512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 29371395 - 29371465
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  29371395 gtgacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 29371465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 320 - 424
Target Start/End: Original strand, 4608989 - 4609093
Alignment:
Q  320 tagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacat 419  Q
    ||||||||  |||| || ||||||| ||||||  |||||||||  | ||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  4608989 tagcacttgtgtgatatggagttgggtgacatcggtgacattgacccatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacat 4609088  T
Q  420 tgtga 424  Q
    |||||    
T  4609089 tgtga 4609093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 324 - 416
Target Start/End: Complemental strand, 36290548 - 36290456
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtga 416  Q
    |||| |||||||||||||||| ||||||| ||| |||||  ||||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  36290548 acttgggtgacatagagttgggtgacattggtggcattgaccaatcacaatgtcacaatatttgtgtttctctctctttcacaagcattgtga 36290456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 15220838 - 15220908
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  15220838 gtgacattggtcaatcacgatctcacaatgcttgtgtttctctctctttcacaagcattgtgagattgtga 15220908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 334 - 424
Target Start/End: Original strand, 45728294 - 45728384
Alignment:
Q  334 catagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||||||| ||| ||| |||| ||||  |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  45728294 catagagttgggtgatattggtgatattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaagcattatgacattgtga 45728384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 46334056 - 46333987
Alignment:
Q  355 tgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||||  |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  46334056 tgacattgaccaatcacaatgtcacaatgcttgtgtttttctctctttcacaagcattgtgacattgtga 46333987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 48993907 - 48993979
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||||  |||||||||||||||||||||||||    
T  48993907 gggtagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 48993979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 34062236 - 34062306
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  34062236 gtgacattggccaatcacaatgccacaatgcttatgtttctctctctttcacaaacattgtgacattgtga 34062306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 21630045 - 21630118
Alignment:
Q  330 gtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttc 403  Q
    |||||||| |||||| ||||||| |||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  21630045 gtgacataaagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttc 21630118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 398
Target Start/End: Original strand, 28395627 - 28395708
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctct 398  Q
    |||||||| || ||| |||||||||||  ||||||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  28395627 gggtagcatttgggtaacatagagttgagtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctct 28395708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 33219601 - 33219670
Alignment:
Q  355 tgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||| ||||||||||||| ||||||||||||||| ||||| ||||||||||||| |||||||||||    
T  33219601 tgacattgatcaatcacaatgttacaatgcttgtgtttttctctctttcacaagcattatgacattgtga 33219670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 5995517 - 5995445
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||||  ||||||||||| |||||||||||||    
T  5995517 gggtaacacttgggtgacatagagttggatgacattggtgacattgaccaatcacaatgccacaatgcttgtg 5995445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 49444903 - 49444975
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||||||||||||| ||||||| ||||||| | ||||||||||||| ||||||||||||    
T  49444903 gggtagcacttgggtgacatagagttgggtgacattggtgacatcgatcaatcacaatgttacaatgcttgtg 49444975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 33219716 - 33219649
Alignment:
Q  322 gcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  33219716 gcacttgggtaacatagagttggatgacattggtgacattgatcaatcacaatgtcataatgcttgtg 33219649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 38674614 - 38674546
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||| ||||| |||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  38674614 gtgatattggccaatcataatgtcacaatgcttgtgtttctctc--tttcacaagcattgtgacattgtga 38674546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 8337962 - 8337892
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||  ||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||    
T  8337962 gtgacattgaccaatcacaatgccacaatgtttgtgtttctctctctttcacaaacattgtgacattgtga 8337892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 316 - 389
Target Start/End: Complemental strand, 15220960 - 15220887
Alignment:
Q  316 agggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||| || |||||||||||||||| ||||||| |||| ||||| |||||||||| ||||||||||||||    
T  15220960 agggtagcatttgggtgacatagagttgggtgacattggtgatattggccaatcacaatctcacaatgcttgtg 15220887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 29179587 - 29179659
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| | |||||||||||||| ||||||| |||||| ||  |||||||||||||||||||||||||    
T  29179587 gggtagcacttggatgacatagagttgggtgacattggtgacactgaccaatcacaatgtcacaatgcttgtg 29179659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 324 - 391
Target Start/End: Original strand, 46931994 - 46932061
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtt 391  Q
    |||| |||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||| |||||||    
T  46931994 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt 46932061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 365 - 424
Target Start/End: Original strand, 47303433 - 47303492
Alignment:
Q  365 caatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||||| |||| |||||||||||||| |||||||| ||||||||||||||||    
T  47303433 caatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtgacattgtga 47303492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 48605059 - 48604988
Alignment:
Q  353 agtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||||||| |||| | |||||||||||||||| |||||||||| ||||||||  |||||||||||||||    
T  48605059 agtgacattggccaattataatgtcacaatgcttgcgtttctctctctttcacaaatattgtgacattgtga 48604988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 49445022 - 49444954
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||| ||||||||||| |||||||||||||||||||||  | ||||||||||||| |||||||||    
T  49445022 gtgacattggccaatcacaatgccacaatgcttgtgtttctctc--tctcacaagcattgtaacattgtga 49444954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 354 - 412
Target Start/End: Complemental strand, 5695000 - 5694942
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcatt 412  Q
    ||||||||||||||| |||||||||||||  |||||||||||||| |||||||||||||    
T  5695000 gtgacattggtcaattacaatgtcacaatatttgtgtttctctctctttcacaagcatt 5694942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 424
Target Start/End: Complemental strand, 1819573 - 1819530
Alignment:
Q  381 atgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  1819573 atgcttgtgtttctctctctttcacaagcattgtgacattgtga 1819530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 17127567 - 17127626
Alignment:
Q  330 gtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||| |||||||| | |||||||||||||||||  |||||||||||||||||||||||||    
T  17127567 gtgatatagagttaggtgacattagtgacattgaccaatcacaatgtcacaatgcttgtg 17127626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 389
Target Start/End: Original strand, 32540755 - 32540810
Alignment:
Q  334 catagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| ||||||| ||| |||||| |||||||||||||||||||||||||    
T  32540755 catagagttgggtgacattggtggcattggccaatcacaatgtcacaatgcttgtg 32540810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 389
Target Start/End: Complemental strand, 4609107 - 4609072
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||||||||||||||||||||||||||||    
T  4609107 gtgacattggtcaatcacaatgtcacaatgcttgtg 4609072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 380
Target Start/End: Original strand, 9884831 - 9884894
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcaca 380  Q
    ||||||||||| |||||||||| | | | ||||||| |||||||||||||| ||||||||||||    
T  9884831 gggtagcactttggtgacatagtggttggtgacattggtgacattggtcaaccacaatgtcaca 9884894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 383
Target Start/End: Complemental strand, 46932130 - 46932064
Alignment:
Q  316 agggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatg 383  Q
    |||||| ||||| |||||||||||||||| ||||||| |||||||||  ||||||||||| |||||||    
T  46932130 agggtaacacttgggtgacatagagttgg-tgacattggtgacattgaccaatcacaatgccacaatg 46932064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 424
Target Start/End: Complemental strand, 19711320 - 19711221
Alignment:
Q  323 cacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgt 422  Q
    ||||||||||| ||| |||| | ||||||| || |||||||   || ||||||||||||| ||| ||||||||||  ||||||| ||||||| |||||||    
T  19711320 cacttaggtgatataaagtttggtgacattggtaacattggctgattacaatgtcacaattcttatgtttctctc--tttcacatgcattgtaacattgt 19711223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 380
Target Start/End: Complemental strand, 6539729 - 6539664
Alignment:
Q  315 aagggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcaca 380  Q
    ||||||||||||| |||||||| | | | ||||| ||| |||||||||||||| ||||||||||||    
T  6539729 aagggtagcacttgggtgacattgtggttgatgatattggtgacattggtcaaccacaatgtcaca 6539664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 29371513 - 29371444
Alignment:
Q  320 tagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||  ||||||||||| | | ||||||| |||| ||||  |||||||||||||||||||||||||    
T  29371513 tagcacttgtgtgacatagagctaggtgacattggtgatattgaccaatcacaatgtcacaatgcttgtg 29371444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 28928868 - 28928820
Alignment:
Q  376 tcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||| || |||||||||||||| ||||||||||| |||||||||||||    
T  28928868 tcacagtgtttgtgtttctctctctttcacaagcactgtgacattgtga 28928820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 46333945 - 46334008
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||||||||||||||         ||||||||| |||||||||||||||||||||||||    
T  46333945 gggtagcacttgggtgacatagagttgga---------tgacattggccaatcacaatgtcacaatgcttgtg 46334008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 389
Target Start/End: Original strand, 1819516 - 1819551
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||| ||||||||||||||||||||||||||    
T  1819516 gtgacattgatcaatcacaatgtcacaatgcttgtg 1819551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 389
Target Start/End: Original strand, 8337878 - 8337913
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||||||||||||||||||||| |||||    
T  8337878 gtgacattggtcaatcacaatgtcacaatgtttgtg 8337913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 389
Target Start/End: Complemental strand, 47303506 - 47303471
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||||||||||||||||||||| |||||    
T  47303506 gtgacattggtcaatcacaatgtcacaatgtttgtg 47303471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 388
Target Start/End: Complemental strand, 32157636 - 32157602
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgt 388  Q
    ||||||||||||||||||| |||||||||||||||    
T  32157636 gtgacattggtcaatcacagtgtcacaatgcttgt 32157602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 36381582 - 36381644
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcac 379  Q
    ||||| ||||| | ||||||||| || ||||| ||| |||||||||| |||||||||||||||    
T  36381582 gggtaacacttggatgacatagaattcgatgatattggtgacattggccaatcacaatgtcac 36381644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 48823884 - 48823945
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttg 387  Q
    ||||||||||| ||||||||||||||||         |||||||||| |||||||||||||||||||||||    
T  48823884 gggtagcacttgggtgacatagagttgg---------gtgacattggccaatcacaatgtcacaatgcttg 48823945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 45728396 - 45728363
Alignment:
Q  356 gacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||||||||||||||| ||||||||||    
T  45728396 gacattggtcaatcacaatgtcataatgcttgtg 45728363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 31342259 - 31342315
Alignment:
Q  323 cacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcac 379  Q
    ||||| |||||||||||||||| |||||    ||||||||| |||||||||||||||    
T  31342259 cacttgggtgacatagagttgggtgacaccgatgacattggccaatcacaatgtcac 31342315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 382
Target Start/End: Original strand, 48604974 - 48605002
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaat 382  Q
    |||||||||||||||||||||||||||||    
T  48604974 gtgacattggtcaatcacaatgtcacaat 48605002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 329 - 424
Target Start/End: Complemental strand, 23444405 - 23444310
Alignment:
Q  329 ggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  23444405 ggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 23444310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 6271699 - 6271799
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||||| ||| ||| |||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  6271699 acttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 6271798  T
Q  424 a 424  Q
    |    
T  6271799 a 6271799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 324 - 420
Target Start/End: Original strand, 51265442 - 51265538
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 420  Q
    |||| |||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  51265442 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacatt 51265538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 324 - 416
Target Start/End: Complemental strand, 30861915 - 30861823
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtga 416  Q
    |||| |||||||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  30861915 acttgggtgacatagagttggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 30861823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 317 - 424
Target Start/End: Original strand, 35682156 - 35682263
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtga 416  Q
    ||||||||||| |||||||||||||| | ||| ||| |||||||||| |||||||||||||| ||| ||||||||||||| | |||||||||||||||||    
T  35682156 gggtagcacttgggtgacatagagttaggtgatattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtga 35682255  T
Q  417 cattgtga 424  Q
    ||||||||    
T  35682256 cattgtga 35682263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 319 - 424
Target Start/End: Complemental strand, 26186160 - 26186057
Alignment:
Q  319 gtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgaca 418  Q
    ||||||||| |||||||||||||||| | |||||  ||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||||||||    
T  26186160 gtagcacttgggtgacatagagttgggtaacattgatgacattggccaatcacaatttcacaatgcttgtgtttctctc--tttcacaagcattgtgaca 26186063  T
Q  419 ttgtga 424  Q
    ||||||    
T  26186062 ttgtga 26186057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 47661856 - 47661939
Alignment:
Q  341 ttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||| ||||||| |||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  47661856 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 47661939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 55090108 - 55090037
Alignment:
Q  353 agtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  55090108 agtgacattggtcaatcacaatgtcacaatgcttgtgtctctctctctttcacaagcattgtgacattgtga 55090037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 42375037 - 42375107
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  42375037 gtgacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 42375107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 40789206 - 40789276
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  40789206 gtgacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 40789276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 315 - 389
Target Start/End: Complemental strand, 42375160 - 42375086
Alignment:
Q  315 aagggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  42375160 aagggtagcacttgggtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgcttgtg 42375086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 47404696 - 47404626
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||    
T  47404696 gtgacattggtcaatcacaatgccacaatgcttgggtttctctctctttcacaagcattgtgacattgtga 47404626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 3862688 - 3862619
Alignment:
Q  323 cacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgttt 392  Q
    |||||||||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  3862688 cacttaggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgttt 3862619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 3871445 - 3871376
Alignment:
Q  323 cacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgttt 392  Q
    |||||||||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  3871445 cacttaggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgttt 3871376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 53954637 - 53954705
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgt 422  Q
    |||||||||| ||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||    
T  53954637 gtgacattggccaatcacaatgtcacaatgctagtgtttctcactctttcacaagcattgtgacattgt 53954705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 52028576 - 52028646
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||| ||||| ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  52028576 gtgatattggccaatcacgatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 52028646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 389
Target Start/End: Complemental strand, 6271851 - 6271778
Alignment:
Q  316 agggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||| |||||||||||||||  ||| ||| |||||||||| |||||||||||||||||||||||||    
T  6271851 agggtagcacttgggtgacatagagttgagtgatattggtgacattggccaatcacaatgtcacaatgcttgtg 6271778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 47661990 - 47661918
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||| || |||||||||||||||| ||||||| |||||||||  |||||||||||||||||||||||||    
T  47661990 gggtagcatttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 47661918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 317 - 424
Target Start/End: Original strand, 44379920 - 44380027
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtga 416  Q
    ||||||||||| | |||||||||||||  ||||||| | |||||||| |||| | |||||||||||||||| |||||||||| ||| | ||| ||||| |    
T  44379920 gggtagcacttggatgacatagagttgagtgacattggcgacattggccaattataatgtcacaatgcttgcgtttctctctattttataagtattgtaa 44380019  T
Q  417 cattgtga 424  Q
    ||||||||    
T  44380020 cattgtga 44380027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 329 - 420
Target Start/End: Original strand, 47762610 - 47762701
Alignment:
Q  329 ggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 420  Q
    |||||||||||| ||  ||| ||| |||||||||  |||||||||||| |||||| || ||||||||||| |||||||||||||||||||||    
T  47762610 ggtgacatagagctgagtgatatttgtgacattgaccaatcacaatgttacaatgtttatgtttctctctctttcacaagcattgtgacatt 47762701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 23444259 - 23444331
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||| || ||| |||||||||||| ||||||| |||||||||  |||||||||||||||||||||||||    
T  23444259 gggtagcatttgggtaacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 23444331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 50384194 - 50384146
Alignment:
Q  376 tcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  50384194 tcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 50384146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 51265593 - 51265521
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||| ||||||||| ||||||| |||||||||  |||||| ||||||||||||||||||    
T  51265593 gggtagcacttgggtgacttagagttgggtgacattggtgacattgaccaatcataatgtcacaatgcttgtg 51265521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 53954758 - 53954686
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||  ||||||||||||||| ||||||| |||||||||  |||| ||||||||||||||||||||    
T  53954758 gggtagcacttttgtgacatagagttgggtgacattggtgacattgtccaattacaatgtcacaatgcttgtg 53954686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 30710048 - 30709986
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcac 379  Q
    |||| |||||| |||||||||||||| | ||||||| |||||||||| |||||||||||||||    
T  30710048 gggtggcacttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgtcac 30709986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 389
Target Start/End: Complemental strand, 35682307 - 35682242
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||| ||||||||||||| | ||||||| |||||||||  | |||||||||||||||||||||||    
T  35682307 acttatgtgacatagagttaggtgacattggtgacattgaccgatcacaatgtcacaatgcttgtg 35682242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 25818462 - 25818414
Alignment:
Q  376 tcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||| |||||||||||||| |||||||| ||||||||||||||||    
T  25818462 tcacaatgattgtgtttctctctctttcacaatcattgtgacattgtga 25818414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 45591499 - 45591455
Alignment:
Q  376 tcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 420  Q
    |||||||| |||||||||||||| |||||||||||||||||||||    
T  45591499 tcacaatgtttgtgtttctctctctttcacaagcattgtgacatt 45591455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 47404584 - 47404647
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| ||||||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  47404584 gggtagcacttgggtgacatagagttgg---------gtgacattggtcaatcacaatgtcacaatgcttgtg 47404647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 55090022 - 55090058
Alignment:
Q  353 agtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||||||||||||||||||||||||||||    
T  55090022 agtgacattggtcaatcacaatgtcacaatgcttgtg 55090058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 389
Target Start/End: Original strand, 26186043 - 26186078
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||||||||||||||||||||||||||||    
T  26186043 gtgacattggtcaatcacaatgtcacaatgcttgtg 26186078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 5048934 - 5048884
Alignment:
Q  331 tgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaa 381  Q
    |||||||||||||| |||||||  |||||||||||||||| ||||||||||    
T  5048934 tgacatagagttgggtgacattgatgacattggtcaatcataatgtcacaa 5048884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 389
Target Start/End: Complemental strand, 47762734 - 47762684
Alignment:
Q  339 agttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||| ||| |||||||||||||| || ||||||||||||||||||    
T  47762734 agttggatgatattggtgacattggtcaaccataatgtcacaatgcttgtg 47762684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 24006159 - 24006111
Alignment:
Q  376 tcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||| || ||||||||||| |||||||||||||||| ||||||||    
T  24006159 tcacaatgtttatgtttctctctctttcacaagcattgtgtcattgtga 24006111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 25818387 - 25818435
Alignment:
Q  341 ttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||| |||||||  ||||||||||||||||||||||||||||| |||||    
T  25818387 ttgggtgacattgatgacattggtcaatcacaatgtcacaatgattgtg 25818435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 31430569 - 31430502
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||| |||| |||||| |||   | |||||||||||||| ||||| |||||||||||||||||||    
T  31430569 gtgacattggccaattacaatgccac---gtttgtgtttctctctctttcataagcattgtgacattgtga 31430502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 50384104 - 50384167
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| ||||||||||||||||         |||||||||| |||||||||||||||||||||||||    
T  50384104 gggtagcacttgggtgacatagagttgg---------gtgacattggccaatcacaatgtcacaatgcttgtg 50384167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 55089903 - 55089935
Alignment:
Q  353 agtgacattggtcaatcacaatgtcacaatgct 385  Q
    |||||||||||||||||||||||||||||||||    
T  55089903 agtgacattggtcaatcacaatgtcacaatgct 55089935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 389
Target Start/End: Complemental strand, 52028660 - 52028625
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||| |||||||||||||||||||||||||    
T  52028660 gtgacattggccaatcacaatgtcacaatgcttgtg 52028625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 31532800 - 31532730
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||  ||||||||| ||||||||| |||| ||||||||| ||| |||   |||||||||||||||    
T  31532800 gtgacattgaccaatcacaacgtcacaatgtttgtatttctctctcttttacatatattgtgacattgtga 31532730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 28694008 - 28693964
Alignment:
Q  380 aatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||| |||||||||||||| |||||||| |||||||| |||||||    
T  28694008 aatgtttgtgtttctctctctttcacaaacattgtgatattgtga 28693964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 329 - 424
Target Start/End: Complemental strand, 47492183 - 47492088
Alignment:
Q  329 ggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||||||| ||||||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47492183 ggtgacatagagttgggtgacattggtcatattggccaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 47492088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 330 - 424
Target Start/End: Original strand, 33689179 - 33689273
Alignment:
Q  330 gtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||||||||||| |||||||  ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33689179 gtgacatagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 33689273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 317 - 424
Target Start/End: Complemental strand, 30734550 - 30734443
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtga 416  Q
    ||||||||||| |||||||||||||| | ||||||| |||||||||| |||||||||||||| ||| ||||||||||||| | |||||||||||||||||    
T  30734550 gggtagcacttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtga 30734451  T
Q  417 cattgtga 424  Q
    ||||||||    
T  30734450 cattgtga 30734443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 324 - 420
Target Start/End: Complemental strand, 51046214 - 51046118
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 420  Q
    |||| |||||||||||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||||||| |||||||| ||||||||||||    
T  51046214 acttgggtgacatagagttggatgacattggtgacattggccaatcacaatgccataatgcttgtgtttctctctctttcacaaacattgtgacatt 51046118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 329 - 424
Target Start/End: Complemental strand, 43139845 - 43139750
Alignment:
Q  329 ggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||||||| ||||||| |||||||||| |||| |||||| |||||||||||||||||||||| ||||||||||||| |||||||||||    
T  43139845 ggtgacatagagttgggtgacattggtgacattggccaataacaatgccacaatgcttgtgtttctctctctttcacaagcattctgacattgtga 43139750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 30476585 - 30476515
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30476585 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 30476515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 320 - 424
Target Start/End: Original strand, 18321644 - 18321748
Alignment:
Q  320 tagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacat 419  Q
    |||||||| ||  |||||||||||| ||| ||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||||||    
T  18321644 tagcacttgggcaacatagagttgggtgatattggtgacattggtcaatcacaatgtcacaaagtttgtgtttttctctttttcacatgcattgtgacat 18321743  T
Q  420 tgtga 424  Q
    |||||    
T  18321744 tgtga 18321748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 41752961 - 41753061
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||| |||||||||| ||| |||||||||||||||| |||||||    
T  41752961 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctttctctttcacaagcattgtggcattgtg 41753060  T
Q  424 a 424  Q
    |    
T  41753061 a 41753061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 47677366 - 47677296
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  47677366 gtgacattgatcaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 47677296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 30580890 - 30580801
Alignment:
Q  331 tgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 420  Q
    ||||||||| |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||  |||||||||||    
T  30580890 tgacatagaattgggtgacatttgtgacattggtcaatcacaatgtcacagtgcttgtgtttctatctctttcacaaatattgtgacatt 30580801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 29031825 - 29031755
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||| |||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  29031825 gtgatattggtcaattacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 29031755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 45103099 - 45103171
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||    
T  45103099 gggtagcacttgggtgacatagagttgggtgacattggtgatattgatcaatcacaatgtcacaatgcttgtg 45103171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 320 - 420
Target Start/End: Original strand, 55223225 - 55223325
Alignment:
Q  320 tagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacat 419  Q
    ||||||||  ||||||||||||| | ||||||| |||| |||||||||||||||| | | ||| ||| ||||||||||| ||||||||||||||||||||    
T  55223225 tagcacttgtgtgacatagagttaggtgacattggtgatattggtcaatcacaatattagaatacttatgtttctctctctttcacaagcattgtgacat 55223324  T
Q  420 t 420  Q
    |    
T  55223325 t 55223325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 1801557 - 1801487
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||| ||||||||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  1801557 gtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtga 1801487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 1801436 - 1801508
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||| ||||| |||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||||||||    
T  1801436 gggtaacacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 1801508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 41753112 - 41753040
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||| ||||| |||||||||||||||  ||||||| |||||||||| ||||||||||| |||||||||||||    
T  41753112 gggtaacacttgggtgacatagagttgagtgacattggtgacattggccaatcacaatgccacaatgcttgtg 41753040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 50524730 - 50524799
Alignment:
Q  355 tgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||||  |||||| |||||||||||| |||||||||||||| |||||||||||| || |||||||||    
T  50524730 tgacattgaccaatcataatgtcacaatgtttgtgtttctctctctttcacaagcatcgtaacattgtga 50524799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 51046063 - 51046135
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||| || | |||||||||||||||||| ||| ||||||||| ||||||| |||||||||||| |||||    
T  51046063 gggtagcatttggatgacatagagttggatgatattggtgacattgatcaatcataatgtcacaatgtttgtg 51046135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 49418802 - 49418732
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||||||||||| | ||| ||| ||||||||||||||||||| ||||||||  ||| |||||||||||    
T  49418802 gtgacattggtcaattataatatcataatgcttgtgtttctctctctttcacaaatattatgacattgtga 49418732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 50550002 - 50550068
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 420  Q
    |||||||||  |||||||||| | ||||||||||||||||||||| |||||||| |||| |||||||    
T  50550002 gtgacattgaccaatcacaatattacaatgcttgtgtttctctctctttcacaaacattatgacatt 50550068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 47492061 - 47492109
Alignment:
Q  341 ttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||| ||||||| |||||||||| |||||||||||||||||||||||||    
T  47492061 ttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgtg 47492109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 39057089 - 39057022
Alignment:
Q  333 acatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctcttt 400  Q
    |||||||||| | ||||||| ||||||| || |||| |||||||||| ||| ||||||||||||||||    
T  39057089 acatagagttaggtgacattggtgacatcggacaatgacaatgtcacgatgtttgtgtttctctcttt 39057022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 50524844 - 50524778
Alignment:
Q  323 cacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||| |||||||||||||||  ||||||| |||| ||| |||||||||||||| || |||||||||    
T  50524844 cacttgggtgacatagagttgagtgacattggtgatattagtcaatcacaatgttacgatgcttgtg 50524778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 389
Target Start/End: Original strand, 21024086 - 21024156
Alignment:
Q  318 ggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||| || ||||||||| | ||| |||| ||| |||||||||||||| |||||||||||||| ||||||    
T  21024086 ggtagcatttgggtgacataaaattg-atgatattggtgacattggtcaaacacaatgtcacaattcttgtg 21024156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 389
Target Start/End: Original strand, 29031741 - 29031776
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||| |||||||||||||||||||||||||||||||    
T  29031741 gtgatattggtcaatcacaatgtcacaatgcttgtg 29031776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 389
Target Start/End: Original strand, 30476501 - 30476536
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||| |||||||||||||||||||||||||    
T  30476501 gtgacattggccaatcacaatgtcacaatgcttgtg 30476536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 30734405 - 30734464
Alignment:
Q  330 gtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||||| | |||||||  ||||||||  | |||||||||||||||||||||||    
T  30734405 gtgacatagagtttggtgacattgatgacattgaccgatcacaatgtcacaatgcttgtg 30734464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 389
Target Start/End: Complemental strand, 33689287 - 33689252
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||| |||||||||||||||||||||||||    
T  33689287 gtgacattggccaatcacaatgtcacaatgcttgtg 33689252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 39430051 - 39429996
Alignment:
Q  319 gtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaat 374  Q
    |||||||||  |||||||| |||||| |||||||||||||||||| ||| ||||||    
T  39430051 gtagcacttgagtgacataaagttgggtgacattagtgacattggccaagcacaat 39429996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 389
Target Start/End: Complemental strand, 18321761 - 18321727
Alignment:
Q  355 tgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||||||||||||||||||||| ||||    
T  18321761 tgacattggtcaatcacaatgtcacaatgcatgtg 18321727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 1272598 - 1272557
Alignment:
Q  316 agggtagcacttaggtgacatagagttggatgacattagtga 357  Q
    |||||||||||| |||||||||||||||| ||||||| ||||    
T  1272598 agggtagcacttgggtgacatagagttgggtgacattggtga 1272557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 39385799 - 39385746
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaa 407  Q
    |||||||||| |||||||||||| |||||  |||| ||||||||| ||||||||    
T  39385799 gtgacattggccaatcacaatgttacaatatttgtatttctctctctttcacaa 39385746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 1801606 - 1801566
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttct 394  Q
    |||||||||| ||||||||||| ||||||| ||||||||||    
T  1801606 gtgacattggccaatcacaatgccacaatgtttgtgtttct 1801566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 381
Target Start/End: Complemental strand, 7977648 - 7977584
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaa 381  Q
    ||||||| ||| ||||||||||| || |||||||||  ||| ||||| ||| |||||||||||||    
T  7977648 gggtagcgcttgggtgacatagaatttgatgacattgatgatattggccaaccacaatgtcacaa 7977584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 382
Target Start/End: Complemental strand, 27729317 - 27729289
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaat 382  Q
    |||||||||||||||||||||||||||||    
T  27729317 gtgacattggtcaatcacaatgtcacaat 27729289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 30904289 - 30904341
Alignment:
Q  372 aatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||||||||||||||||||||||| ||| | ||  ||||||| |||||||    
T  30904289 aatgtcacaatgcttgtgtttctctctcttttataaatattgtgatattgtga 30904341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 55223344 - 55223308
Alignment:
Q  353 agtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  55223344 agtgatattggtcaatcataatgtcacaatgcttgtg 55223308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 330 - 424
Target Start/End: Complemental strand, 7181 - 7088
Alignment:
Q  330 gtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7181 gtgacatagagttgg-tgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 7088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 7050 - 7109
Alignment:
Q  330 gtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||||||| ||||||| |||| ||| | |||||||||||||||||||||||||    
T  7050 gtgacatagagttgggtgacattggtgatattagccaatcacaatgtcacaatgcttgtg 7109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 11016866 - 11016966
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||    
T  11016866 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtgacattgtg 11016965  T
Q  424 a 424  Q
    |    
T  11016966 a 11016966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 34854836 - 34854736
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||||| ||||||| |||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||| |||||||    
T  34854836 acttgggtgacatagagttgggtgacattggtgacattggtcaatcacaatgccacaatgtttgtgtttctatctctttcacaagcattgtggcattgtg 34854737  T
Q  424 a 424  Q
    |    
T  34854736 a 34854736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 324 - 420
Target Start/End: Original strand, 38975802 - 38975898
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 420  Q
    |||| |||||||||||||||| ||||||| || ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||    
T  38975802 acttgggtgacatagagttgggtgacattggtaacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtggcatt 38975898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 327 - 424
Target Start/End: Complemental strand, 27028931 - 27028834
Alignment:
Q  327 taggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||||||||| |||| |||  || |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||    
T  27028931 taggtgacatagacttgggtgatgttggtgacattggtcaatcacaatgtcacaatgtttgtgtttctctctctttcagaagcattgtgacattgtga 27028834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 4290542 - 4290642
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||||| ||| ||| |||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  4290542 acttgggtgacatagagttgggtgatattggtgatattggtcaatcacaatgccacaatgctcgtgtttctctctctttcacaagaattgtgacattgtg 4290641  T
Q  424 a 424  Q
    |    
T  4290642 a 4290642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 41018369 - 41018269
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||||| ||||||| |||||||||  ||||||||||| |||||||||| ||||||||||| |||||||||||||| |||||||||    
T  41018369 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagcattgggacattgtg 41018270  T
Q  424 a 424  Q
    |    
T  41018269 a 41018269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 15027539 - 15027639
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| ||| |||||||||||  ||||||| |||||||||  ||||||||||  ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  15027539 acttgggtaacatagagttgtttgacattggtgacattgaccaatcacaataccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtg 15027638  T
Q  424 a 424  Q
    |    
T  15027639 a 15027639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 324 - 407
Target Start/End: Complemental strand, 45231991 - 45231908
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaa 407  Q
    |||| |||||||||||||||| ||||||| |||||||||| |||||||||||| ||||||||| ||||||||||| ||||||||    
T  45231991 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgttacaatgcttttgtttctctctctttcacaa 45231908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 318 - 394
Target Start/End: Original strand, 27028719 - 27028795
Alignment:
Q  318 ggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttct 394  Q
    |||||||||| ||||||||| |||||  ||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  27028719 ggtagcactttggtgacatatagttgagtgacattggtgacattggacaatcacaatgtcacaatgcttgtgtttct 27028795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 7672022 - 7671952
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||| ||||||||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  7672022 gtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtga 7671952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 4290693 - 4290621
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| ||||||||| |||||| ||||||| |||||||||| |||||||||||||||||| ||||||    
T  4290693 gggtagcacttgggtgacatacagttgggtgacattggtgacattggccaatcacaatgtcacaattcttgtg 4290621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 11017017 - 11016945
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||||  ||||||||||||||||||| |||||    
T  11017017 gggtagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtg 11016945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 42628443 - 42628371
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||||||||||||| ||||||| |||| ||||| ||||||||||||| |||||||||||    
T  42628443 gggtagcacttgggtgacatagagttgggtgacattggtgatattggccaatcacaatgtcccaatgcttgtg 42628371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 353 - 424
Target Start/End: Original strand, 10419484 - 10419555
Alignment:
Q  353 agtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||| |||||||||  ||||||||||||||    
T  10419484 agtgacattggtcaatcataatgttacaatacttgtgtttctctctctttcacaagttttgtgacattgtga 10419555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 317 - 424
Target Start/End: Original strand, 41945845 - 41945952
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtga 416  Q
    ||||||||||||| ||||||||| |||  |||||||  ||||||| |||||||| ||||||| |||| ||| |||| | ||| ||||||||||||||| |    
T  41945845 gggtagcacttagatgacatagaattgagtgacattgatgacattagtcaatcataatgtcataatgtttgcgtttttttctctttcacaagcattgtaa 41945944  T
Q  417 cattgtga 424  Q
    ||||||||    
T  41945945 cattgtga 41945952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 22764819 - 22764753
Alignment:
Q  346 tgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcatt 412  Q
    ||||||| |||| ||||| ||||||||||||||||||| |||||||||||||| |||||||||||||    
T  22764819 tgacattggtgatattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcatt 22764753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 29053425 - 29053355
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||| ||||||||||| ||||||| |||||||||||||| |||||||||||||| | ||||||||    
T  29053425 gtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgaggcattgtga 29053355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 42628322 - 42628392
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||  ||||||||||| |||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  42628322 gtgacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagcattgggacattgtga 42628392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 4649347 - 4649419
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtt--tctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||||||||||||||||||  ||||||||||||||  ||||||| |||||||||||| ||||||||||||    
T  4649347 gtgacattggtcaatcacaatgctacaatgcttgtgtttctctctctctttcacaagcatcgtgacattgtga 4649419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 389
Target Start/End: Original strand, 48000691 - 48000756
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||| |||||||| ||||||| ||||||| ||||||||| |||||||||||| |||||||||||||    
T  48000691 acttgggtgacattgagttgggtgacattggtgacattgatcaatcacaatgccacaatgcttgtg 48000756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 38975953 - 38975881
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||| |||||||||||||||||||| | ||||||| ||||||||| ||||| | |||| |||||||||||||    
T  38975953 gggtaacacttaggtgacatagagttaggtgacattggtgacattgatcaattataatgccacaatgcttgtg 38975881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 415
Target Start/End: Complemental strand, 30217588 - 30217504
Alignment:
Q  330 gtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtg 415  Q
    ||||||||||||| | |||||||  ||||||| | |||||||||| ||| |||| || ||||||||||| ||||||||||||||||    
T  30217588 gtgacatagagtttg-tgacattgatgacattcgccaatcacaatatcaaaatgtttatgtttctctctctttcacaagcattgtg 30217504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 424
Target Start/End: Original strand, 48000769 - 48000834
Alignment:
Q  359 attggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||| ||||||||||| ||||||| |||||||||||||| |||||||  ||||||| ||||||||    
T  48000769 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacagacattgtggcattgtga 48000834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 41945997 - 41945931
Alignment:
Q  323 cacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||| ||||||||| |||||  ||||||| || | |||||||||||||||||| ||||||||||||    
T  41945997 cacttgggtgacataaagttgagtgacattggtaatattggtcaatcacaatgttacaatgcttgtg 41945931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 383
Target Start/End: Complemental strand, 48000885 - 48000819
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatg 383  Q
    ||||| ||||| ||| |||||||||||| ||||||| |||||||||  ||||||||||| |||||||    
T  48000885 gggtaacacttgggtcacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatg 48000819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 389
Target Start/End: Complemental strand, 4649433 - 4649398
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||||||||||||||||| |||||||||    
T  4649433 gtgacattggtcaatcacaatgtcacgatgcttgtg 4649398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 15027661 - 15027618
Alignment:
Q  346 tgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||| |||||||||  |||||||||||||||||||||||||    
T  15027661 tgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 15027618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 43500003 - 43500037
Alignment:
Q  346 tgacattagtgacattggtcaatcacaatgtcaca 380  Q
    |||||||||||| ||||||||||||||||||||||    
T  43500003 tgacattagtgatattggtcaatcacaatgtcaca 43500037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 43)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 320 - 424
Target Start/End: Original strand, 16439131 - 16439235
Alignment:
Q  320 tagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacat 419  Q
    |||||||| | ||| |||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16439131 tagcacttggatgatatagagttgggtaatattggtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacat 16439230  T
Q  420 tgtga 424  Q
    |||||    
T  16439231 tgtga 16439235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 19655155 - 19655255
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  19655155 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtg 19655254  T
Q  424 a 424  Q
    |    
T  19655255 a 19655255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 331 - 424
Target Start/End: Complemental strand, 30117962 - 30117869
Alignment:
Q  331 tgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||||||||||||| |||| |||||||||||| |||| |||||||||||||||||||||||||||| || ||||||||||||||||    
T  30117962 tgacatagagttggatgacattggtgatattggtcaatcataatgccacaatgcttgtgtttctctctttttcataaacattgtgacattgtga 30117869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 317 - 424
Target Start/End: Original strand, 12913793 - 12913900
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtga 416  Q
    |||||||||||  |||||||| |||||  ||||||| |||||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||| |||    
T  12913793 gggtagcacttgtgtgacatatagttgagtgacattggtgacattggccaatcacaatgtcacaattcttgtgtatctctctctttcacaagcattatga 12913892  T
Q  417 cattgtga 424  Q
    ||||||||    
T  12913893 cattgtga 12913900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 29699381 - 29699464
Alignment:
Q  341 ttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||| ||||||| |||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  29699381 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 29699464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 330 - 424
Target Start/End: Original strand, 291100 - 291194
Alignment:
Q  330 gtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||||||| ||||| ||| |||||||| ||||||||||||||||    
T  291100 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtatttctttctctttcacaaacattgtgacattgtga 291194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 320 - 420
Target Start/End: Complemental strand, 3180204 - 3180105
Alignment:
Q  320 tagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacat 419  Q
    ||||||||  || |||||||||||| | ||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||    
T  3180204 tagcacttgtgtcacatagagttgg-taacattggtgacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtgacat 3180106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 324 - 412
Target Start/End: Original strand, 19598329 - 19598417
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcatt 412  Q
    |||| |||||||||||||||| | ||||| |||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||    
T  19598329 acttgggtgacatagagttgggtaacattggtgacattggtcaatcacaataccacaatgcttgtgtttctctctctttcacaagcatt 19598417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 3899866 - 3899936
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  3899866 gtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 3899936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 16971171 - 16971241
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  16971171 gtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 16971241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 2953338 - 2953266
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||    
T  2953338 gggtagcacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgtg 2953266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 317 - 420
Target Start/End: Original strand, 28818916 - 28819010
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtga 416  Q
    ||||||||||| ||||||||||||||||         ||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  28818916 gggtagcacttgggtgacatagagttgg---------gtgacattggtcaatcacaatgtcacaatacttgtatttctctctctttcacaagcattgtga 28819006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 16971292 - 16971220
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||||  |||||||||||||||||||||||||    
T  16971292 gggtagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 16971220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 26662426 - 26662496
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||  |||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||    
T  26662426 gtgacattgaccaatcacaatgttacattgcttgtgtttctctctttttcacaagtattgtgacattgtga 26662496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 26934021 - 26934091
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||  |||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||    
T  26934021 gtgacattgaccaatcacaatgttacattgcttgtgtttctctctttttcacaagtattgtgacattgtga 26934091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 29699513 - 29699443
Alignment:
Q  319 gtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||| |||||||||||||||| ||| ||| |||||||||| |||||||||||||||||||||||||    
T  29699513 gtagcacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgtcacaatgcttgtg 29699443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 38134479 - 38134414
Alignment:
Q  359 attggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||| |||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||    
T  38134479 attggccaatcacaatgtcacaatgcttgtgtttctttctctttcactagcattgtgacattgtga 38134414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 291245 - 291173
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| ||||| |||||||||| ||||||| ||||||||| |||||||||||||||||||| |||||    
T  291245 gggtagcacttgggtgatatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgtttgtg 291173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 2093927 - 2093999
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||||||||||||| ||| ||| ||||||||| ||||||||||||||| ||||||||||    
T  2093927 gggtagcacttgggtgacatagagttgggtgatattggtgacattgatcaatcacaatgtcataatgcttgtg 2093999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 318 - 389
Target Start/End: Complemental strand, 3899986 - 3899915
Alignment:
Q  318 ggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||| |||||| ||||||||| ||||||| |||||||||  |||||||||||||||||||||||||    
T  3899986 ggtagcacttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 3899915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 317 - 384
Target Start/End: Original strand, 13312254 - 13312321
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgc 384  Q
    |||||||||||||||||||||||||| | |||||||  |||||||| |||||||||||||||||||||    
T  13312254 gggtagcacttaggtgacatagagttaggtgacattgatgacattgatcaatcacaatgtcacaatgc 13312321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 2356419 - 2356351
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgctt 386  Q
    |||||||||||  ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  2356419 gggtagcacttgtgtgacatagagttggatgacattggtgacattggccaatcac-atgtcacaatgctt 2356351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 424
Target Start/End: Original strand, 2953239 - 2953287
Alignment:
Q  376 tcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2953239 tcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 2953287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 320 - 391
Target Start/End: Original strand, 1638450 - 1638521
Alignment:
Q  320 tagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtt 391  Q
    |||||||||||||| |||||||||| ||| ||| |||| ||||| ||||||||||||||||||| |||||||    
T  1638450 tagcacttaggtgatatagagttgggtgatatttgtgatattggccaatcacaatgtcacaatgtttgtgtt 1638521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 12913938 - 12913879
Alignment:
Q  330 gtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||||||| ||||||||||    
T  12913938 gtgacatagagttgggtgacattggtgatattggtcaatcacaatgtcataatgcttgtg 12913879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 16802471 - 16802537
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 420  Q
    |||||||||| |||||||||||| |||||  |||||||||||||| ||| |||||||||||||||||    
T  16802471 gtgacattggccaatcacaatgtaacaatatttgtgtttctctctcttttacaagcattgtgacatt 16802537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 19655300 - 19655234
Alignment:
Q  323 cacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||| |||||||||||||||  ||||||| |||||||||  |||||||||||||||||||||||||    
T  19655300 cacttgggtgacatagagttgagtgacattggtgacattgtccaatcacaatgtcacaatgcttgtg 19655234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 28819053 - 28818993
Alignment:
Q  329 ggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||||||  ||| ||| ||||||||||||||||| ||||||||||||||||||    
T  28819053 ggtgacatagagttgagtgatattggtgacattggtcaatcataatgtcacaatgcttgtg 28818993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 424
Target Start/End: Complemental strand, 2935977 - 2935871
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtga 416  Q
    |||||||||||| || ||||| |||| | ||||||| |||| ||||  ||| ||||||||||||||| |||||||||||| | ||| |||| |||| |||    
T  2935977 gggtagcacttacgtaacataaagtttggtgacatt-gtgatattgaacaaccacaatgtcacaatgtttgtgtttctctatcttttacaaacattatga 2935879  T
Q  417 cattgtga 424  Q
    ||||||||    
T  2935878 cattgtga 2935871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 366 - 424
Target Start/End: Complemental strand, 2094036 - 2093978
Alignment:
Q  366 aatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||| | ||| ||||||||||||||||||| ||||||||||||| |||||||||||    
T  2094036 aatcacactatcataatgcttgtgtttctctctctttcacaagcattatgacattgtga 2093978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 416
Target Start/End: Complemental strand, 39031285 - 39031200
Alignment:
Q  331 tgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtga 416  Q
    ||||||||||| || ||||||| |||||| || ||||||||||| ||| |||  |||| ||||||| | |||||||||||||||||    
T  39031285 tgacatagagtggggtgacattggtgacactgatcaatcacaatatcataatatttgtatttctctttctttcacaagcattgtga 39031200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 7009452 - 7009404
Alignment:
Q  341 ttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||| |||| |||||||||||||||| ||||||||||||||    
T  7009452 ttggatgacattggtgatattggtcaatcacaatatcacaatgcttgtg 7009404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 11983247 - 11983310
Alignment:
Q  318 ggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaat 382  Q
    |||||||||| ||||||||||| |||| ||| ||| ||||||||||||||||| |||||||||||    
T  11983247 ggtagcacttgggtgacatagaattgg-tgatattggtgacattggtcaatcaaaatgtcacaat 11983310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 383
Target Start/End: Original strand, 30117818 - 30117884
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatg 383  Q
    |||||||| || ||||| |||||||||| ||||||| |||| ||||  |||||||||||||||||||    
T  30117818 gggtagcatttgggtgatatagagttgggtgacattggtgatattgaccaatcacaatgtcacaatg 30117884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 384
Target Start/End: Complemental strand, 32485684 - 32485630
Alignment:
Q  330 gtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgc 384  Q
    |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||    
T  32485684 gtgacacagagttgggtgacattggtgacattgatcaatcacaatatcacaatgc 32485630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 26662535 - 26662475
Alignment:
Q  330 gtgacatagagttggatgacattagtgacattggtc-aatcacaatgtcacaatgcttgtg 389  Q
    ||||| ||||||||| ||| ||| |||||||||||| ||||||||||||||||| ||||||    
T  26662535 gtgacttagagttgggtgatattggtgacattggtcaaatcacaatgtcacaatacttgtg 26662475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 26934130 - 26934070
Alignment:
Q  330 gtgacatagagttggatgacattagtgacattggtc-aatcacaatgtcacaatgcttgtg 389  Q
    ||||| ||||||||| ||| ||| |||||||||||| ||||||||||||||||| ||||||    
T  26934130 gtgacttagagttgggtgatattggtgacattggtcaaatcacaatgtcacaatacttgtg 26934070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 389
Target Start/End: Complemental strand, 16439249 - 16439214
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||| ||||||||||||||||||||||||||    
T  16439249 gtgacattgatcaatcacaatgtcacaatgcttgtg 16439214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 419
Target Start/End: Original strand, 2356301 - 2356364
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacat 419  Q
    |||||||| | |||| ||||||| | ||||||||||||||||||  ||||| ||||||||||||||    
T  2356301 gtgacattaggcaattacaatgttataatgcttgtgtttctctc--tttcataagcattgtgacat 2356364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 389
Target Start/End: Original strand, 6912325 - 6912359
Alignment:
Q  355 tgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||| |||||||||||||||||||||||||||    
T  6912325 tgacattagtcaatcacaatgtcacaatgcttgtg 6912359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 19272400 - 19272350
Alignment:
Q  320 tagcacttaggtgacatagagttggatgacattagtgacattggtcaatca 370  Q
    ||||| |||| |||||||||||||| | ||||||||||||||| |||||||    
T  19272400 tagcatttagatgacatagagttgggtcacattagtgacattgatcaatca 19272350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 17849269 - 17849220
Alignment:
Q  341 ttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgt 390  Q
    |||| ||| ||| ||||||||||||||||||||| || ||||||||||||    
T  17849269 ttgggtgatattggtgacattggtcaatcacaatatcgcaatgcttgtgt 17849220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 19598474 - 19598434
Alignment:
Q  313 caaagggtagcacttaggtgacatagagttggatgacatta 353  Q
    ||||||||| ||||| |||||||||||||||| ||||||||    
T  19598474 caaagggtaacacttgggtgacatagagttgggtgacatta 19598434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 16514421 - 16514521
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| |||||||||||||||| ||||||| |||||||||| ||||||| ||| || ||||||||||||||||||| ||||||||||||||||||||||||    
T  16514421 acttgggtgacatagagttgggtgacattggtgacattggccaatcactatgccataatgcttgtgtttctctctctttcacaagcattgtgacattgtg 16514520  T
Q  424 a 424  Q
    |    
T  16514521 a 16514521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 316 - 424
Target Start/End: Complemental strand, 14229492 - 14229394
Alignment:
Q  316 agggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtg 415  Q
    |||||||||||| |||||||||||||||||||||||| |          |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14229492 agggtagcacttgggtgacatagagttggatgacattgg----------caatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtg 14229403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 324 - 420
Target Start/End: Complemental strand, 29508832 - 29508736
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 420  Q
    |||| |||||||||||||||| ||| ||| |||||||||| ||||||||||| | |||||||||||||||||||| |||||||||||||||| ||||    
T  29508832 acttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtggcatt 29508736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 6721965 - 6722048
Alignment:
Q  341 ttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||| |||||||||  |||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  6721965 ttggatgacattggtgacattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaaacattgtgacattgtga 6722048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 15011294 - 15011377
Alignment:
Q  341 ttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||| ||||||| |||| ||||| ||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  15011294 ttgggtgacattggtgatattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 15011377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 2828611 - 2828681
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||| |||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||    
T  2828611 gtgacattggccaatcacaatgtcaaaatgcttgtgtttctctctctttcagaagcattgtgacattgtga 2828681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 6722099 - 6722027
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| |||||    
T  6722099 gggtagcacttgggtgacatagagttggttgacattagtgatattggccaatcacaatgtcacaatgtttgtg 6722027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 2893990 - 2894060
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||| |||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| |||||    
T  2893990 gtgacattggccaatcacaatctcacaatgcttgtatttctctctctttcacaagcattgtgacactgtga 2894060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 6217335 - 6217265
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||| ||||||||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  6217335 gtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtga 6217265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 29925681 - 29925611
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  29925681 gtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattctgacattgtga 29925611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 37762112 - 37762042
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    ||||||| ||||||||||||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||    
T  37762112 gtgacatgggtcaatcacaatatcacaatgcttgtgtttctttctctttcacaagcattgcgacattgtga 37762042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 38933614 - 38933680
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 420  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  38933614 gtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacatt 38933680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 14229355 - 14229415
Alignment:
Q  329 ggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||    
T  14229355 ggtgacatagagttcggtgacattggtgacattggtcaatcacaatgtcacaatgcttgtg 14229415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 16514572 - 16514500
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||||||||||||| ||| ||| |||||||||  |||||||||||||||||||||||||    
T  16514572 gggtagcacttgggtgacatagagttgggtgagattggtgacattgaccaatcacaatgtcacaatgcttgtg 16514500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 38933735 - 38933663
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||||||||||||| ||||||| ||||| |||| |||||| ||||||||||||||||||    
T  38933735 gggtagcacttgggtgacatagagttgggtgacattggtgacgttggccaatcataatgtcacaatgcttgtg 38933663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 341 - 424
Target Start/End: Complemental strand, 14470716 - 14470633
Alignment:
Q  341 ttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||| ||| || ||||| | ||||||||||||||||||| |||||||||||||| ||||||||||||||  |||||||||    
T  14470716 ttggatgatattggtaacattagccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgcaacattgtga 14470633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 396
Target Start/End: Complemental strand, 9173120 - 9173050
Alignment:
Q  326 ttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctct 396  Q
    ||||||||||||||||||| ||||||| |||| ||||| ||||||||||| |||||||||||| |||||||    
T  9173120 ttaggtgacatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttgtatttctct 9173050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 33018679 - 33018621
Alignment:
Q  331 tgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||    
T  33018679 tgacatagagttgggtgacattggtgatattggtcaatcacaatgtcacaatgcttgtg 33018621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 317 - 382
Target Start/End: Complemental strand, 14892408 - 14892343
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaat 382  Q
    |||||||| || |||||||||||||||||||||||| ||||||||| ||||||||||||| |||||    
T  14892408 gggtagcatttgggtgacatagagttggatgacattggtgacattgatcaatcacaatgttacaat 14892343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 6217226 - 6217286
Alignment:
Q  329 ggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||||||||    
T  6217226 ggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 6217286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 424
Target Start/End: Original strand, 24115913 - 24116017
Alignment:
Q  320 tagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacat 419  Q
    ||||||||  |||| |||||||||  | ||||| || ||||||| |||||||||||| ||||||| |||||||| | || |||||||||||||| |||||    
T  24115913 tagcacttgtgtgagatagagttgagtcacattggtaacattggccaatcacaatgttacaatgcctgtgtttcacactctttcacaagcattgcgacat 24116012  T
Q  420 tgtga 424  Q
    |||||    
T  24116013 tgtga 24116017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 24116055 - 24115996
Alignment:
Q  330 gtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||    
T  24116055 gtgacatagagttgggtgccattagtgatattggtcaatcacaatgtcgcaatgcttgtg 24115996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 29508680 - 29508753
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcac-aatgtcacaatgcttgtg 389  Q
    ||||| |||||||||||||||||||||| ||||||| |||||||||  ||||||| |||| |||||||||||||    
T  29508680 gggtaacacttaggtgacatagagttgggtgacattggtgacattgaccaatcacaaatgccacaatgcttgtg 29508753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 32545782 - 32545840
Alignment:
Q  323 cacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaa 381  Q
    |||||||||||||||||||| | ||||||| |||||||||||||| ||| |||||||||    
T  32545782 cacttaggtgacatagagttaggtgacattggtgacattggtcaaccacgatgtcacaa 32545840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 32545933 - 32545867
Alignment:
Q  320 tagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgctt 386  Q
    |||||||| ||||||||||||||   ||||||| |||||||||| |||||| |||||||||||||||    
T  32545933 tagcacttgggtgacatagagtttagtgacattggtgacattggccaatcataatgtcacaatgctt 32545867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 37961733 - 37961803
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||  | ||||||||| || |||| |||||||||||||| |||||||||||||||| ||||||||    
T  37961733 gtgacattgaccgatcacaatgccataatgtttgtgtttctctctctttcacaagcattgtggcattgtga 37961803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 14470585 - 14470654
Alignment:
Q  320 tagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||  ||||||||||||||| ||||||| |||||||||  ||||||||||||  |||||||||||    
T  14470585 tagcacttgtgtgacatagagttgggtgacattggtgacattgaccaatcacaatgttgcaatgcttgtg 14470654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 8534165 - 8534241
Alignment:
Q  346 tgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgt 422  Q
    |||||||  |||||||| ||||| ||||||| | |||  |||||||||||||| ||||||||| |||||||||||||    
T  8534165 tgacattgatgacattgatcaattacaatgtaaaaatatttgtgtttctctctatttcacaagaattgtgacattgt 8534241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 37961854 - 37961782
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||| ||||| |||||||||||||||  ||| ||| |||||||||  ||||||||||| |||||||||||||    
T  37961854 gggtaacacttgggtgacatagagttgagtgatatttgtgacattgaccaatcacaatgccacaatgcttgtg 37961782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 14464581 - 14464617
Alignment:
Q  353 agtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||||||||||||||||||||| ||||||    
T  14464581 agtgacattggtcaatcacaatgtcacaatacttgtg 14464617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 15011392 - 15011356
Alignment:
Q  353 agtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||||||||||||||||||||||    
T  15011392 agtgacattggccaatcacaatgtcacaatgcttgtg 15011356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 389
Target Start/End: Complemental strand, 2894073 - 2894039
Alignment:
Q  355 tgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||||||||||| ||||||||||||||||    
T  2894073 tgacattggtcaatcacagtgtcacaatgcttgtg 2894039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 394
Target Start/End: Complemental strand, 2143984 - 2143943
Alignment:
Q  353 agtgacattggtcaatcacaatgtcacaatgcttgtgtttct 394  Q
    |||||| |||| |||||||||||||| |||||||||||||||    
T  2143984 agtgacgttggccaatcacaatgtcataatgcttgtgtttct 2143943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 2828695 - 2828663
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgctt 386  Q
    |||||||||| ||||||||||||||||||||||    
T  2828695 gtgacattggccaatcacaatgtcacaatgctt 2828663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 27361 - 27261
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtg 423  Q
    |||| ||||| |||||||||| ||||||| |||| ||||| ||||||||||| |||||||||| ||||||||||| ||||||||| ||| ||||||||||    
T  27361 acttgggtgatatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttctgtttctctctctttcacaagaattatgacattgtg 27262  T
Q  424 a 424  Q
    |    
T  27261 a 27261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 389
Target Start/End: Original strand, 27217 - 27282
Alignment:
Q  324 acttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||| |||||||||||||||| |||||||||||| ||||| |||||||||||||| ||| ||||||    
T  27217 acttgggtgacatagagttgggtgacattagtgatattggccaatcacaatgtcataattcttgtg 27282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 63784 - 63854
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||| ||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  63784 gtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 63854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 389
Target Start/End: Complemental strand, 63868 - 63833
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    |||||||||| |||||||||||||||||||||||||    
T  63868 gtgacattggccaatcacaatgtcacaatgcttgtg 63833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 49814 - 49744
Alignment:
Q  354 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||| ||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||    
T  49814 gtgacattggccaatcacaatgccacaatgcttgtgtttctctttctttcacaagcattgtgacattgtga 49744  T

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Target: scaffold0016; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 49693 - 49765
Alignment:
Q  317 gggtagcacttaggtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||| |||||||||||||||| |||||||  ||||||||  |||||||||||||||||||||||||    
T  49693 gggtagcacttgggtgacatagagttgggtgacattgatgacattgaccaatcacaatgtcacaatgcttgtg 49765  T

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Target: scaffold1033 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 424
Target Start/End: Original strand, 2265 - 2310
Alignment:
Q  379 caatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtga 2310  T

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Target: scaffold1033; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 2322 - 2289
Alignment:
Q  356 gacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||| ||||||||||||||||||||||||||    
T  2322 gacattgatcaatcacaatgtcacaatgcttgtg 2289  T

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Target: scaffold1029 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 424
Target Start/End: Original strand, 2265 - 2310
Alignment:
Q  379 caatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtga 2310  T

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Target: scaffold1029; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 2322 - 2289
Alignment:
Q  356 gacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||| ||||||||||||||||||||||||||    
T  2322 gacattgatcaatcacaatgtcacaatgcttgtg 2289  T

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Target: scaffold0180 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 19125 - 19184
Alignment:
Q  330 gtgacatagagttggatgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 389  Q
    ||||||||||||||| |||||||  ||| |||| ||||||||||||||||||||||||||    
T  19125 gtgacatagagttgggtgacattgatgatattgatcaatcacaatgtcacaatgcttgtg 19184  T

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Target: scaffold0180; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 19207 - 19163
Alignment:
Q  380 aatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||| |||||||||||| | || ||||||||||||||||||||||    
T  19207 aatgtttgtgtttctctttcttccacaagcattgtgacattgtga 19163  T

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Target: scaffold0481 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 424
Target Start/End: Complemental strand, 2974 - 2928
Alignment:
Q  378 acaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 424  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||    
T  2974 acaatgtttgtgtttctctctctttcacaaacattgtgacattgtga 2928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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