View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7347_low_15 (Length: 536)
Name: NF7347_low_15
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 217 - 520
Target Start/End: Original strand, 45540505 - 45540808
Alignment:
| Q |
217 |
ttcttcaactaatgttatttcaaatctcaattcaccaacatccacatatgaattgtcgcaagagagttcattcaatgagaaaacaaatacaaataacagt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45540505 |
ttcttcaactaatgttatttcaaatctcaattcaccaacatccacatatgaattgtcgcaagaaagttcattcaatgagaaaacaaatacaaataacagt |
45540604 |
T |
|
| Q |
317 |
gactccgatgatgtagttaaatcatggcaaacccagccatctccatgtgatattgtatcaacaaatgttgaatcacatcacccctttaaagaaattgaga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45540605 |
gactccgatgatgtagttaaatcatggcaaacccagccatctccatgtgatattgtatcaacaaatgttgaatcacatcacccctttaaagaaattgaga |
45540704 |
T |
|
| Q |
417 |
aaggacaacagggagtggatgatactatccatacggggacatcatcttttccaactttagaaccattaaaccaagaacaaacgtgcgcttctataaatgt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45540705 |
aaggacaacagggagtggatgatactatccatacagggacatcatcttttccaactttagaatcattaaaccaagaacaaacgtgcgcttctataaatgt |
45540804 |
T |
|
| Q |
517 |
caca |
520 |
Q |
| |
|
|||| |
|
|
| T |
45540805 |
caca |
45540808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 45540265 - 45540468
Alignment:
| Q |
16 |
cacaaatgcttatcaaccaccacctccgttaacagaacaagagcttgggagagcatctaacaatcctttggaagctcattctcatataccagacatcaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45540265 |
cacaaatgcttatcaaccaccacctccgttaacagaacaagagcttgggagagcatctaacaatcctttggaagctcattctcatataccagacatcaac |
45540364 |
T |
|
| Q |
116 |
caagcctccgtgacatcattgtcgtcatcgttccaaaatccattcctaggaccaagtgaggcaaccaacgacactgttgaggatgacacaaacattggta |
215 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45540365 |
caagcccccgtgacatcattgtcgtcatcgttccaaaatccattcataggaccaagtgaggcaaccaacgacactgttgaggatgacacaaacattggta |
45540464 |
T |
|
| Q |
216 |
gttc |
219 |
Q |
| |
|
|||| |
|
|
| T |
45540465 |
gttc |
45540468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University