View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_16 (Length: 524)
Name: NF7347_low_16
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 25521095 - 25520658
Alignment:
| Q |
18 |
ctcttttcttttcatatcactaatttatcacaaatacaatattatacacctttaagagggtgtttgtttcaa-gtttattaaattcattaagaataactt |
116 |
Q |
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| T |
25521095 |
ctcttttcttttcatatcactaatttatcacaaatacaatattatacacctttaagagggtgtttgtttcaaagtttattaaattcattaagaataactt |
25520996 |
T |
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| Q |
117 |
taccgaaaatatatagatagaaggtttattctatggtattcttatgaaatatacaaaaaagatgttttatattgcttaaacggtttttatacaaaaataa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25520995 |
taccgaaaatatatagatagaaggtttattctatggtattcttatgaaatatacaaaaaagatgttttatattgcttaaacggtttttatacaaaaataa |
25520896 |
T |
|
| Q |
217 |
tttgtaacaattgcctcgggtgtttaagaagcaatttccttacatatatccatcccactcatccgttacatatccctcatttgagtaaaaactatcacac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25520895 |
tttgtaacaattgcctcgggtgtttaagaagcaatttccttacatatatccatcccactcatccgttacatatccctcatttgagtaaaaactatcacac |
25520796 |
T |
|
| Q |
317 |
aaagaccnnnnnnnnnnnnnnnnnnnnnnnnnggttacctctcaagctatctctttctaagtctaagctctcacatcctcttttccaaaaaatctctccg |
416 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25520795 |
aaagaccttttctttctatttatttcttttttggttacctctcaagctatctctttctaagtctaagctctcacatcctcttttccaaaaaatctctccg |
25520696 |
T |
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| Q |
417 |
tctcttacattcagtagaatcaaaactatcaactatcc |
454 |
Q |
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| T |
25520695 |
tctcttacattcagtagaatcaaaactatcaactatcc |
25520658 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 38437205 - 38437233
Alignment:
| Q |
77 |
gtgtttgtttcaagtttattaaattcatt |
105 |
Q |
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| T |
38437205 |
gtgtttgtttcaagtttattaaattcatt |
38437233 |
T |
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