View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7347_low_19 (Length: 504)
Name: NF7347_low_19
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 30055010 - 30054495
Alignment:
| Q |
1 |
tccatcttgcttattttcatctcaaactttaacttctcttgacctttctattcacgttcgtattggagtatttaacaaagtatacttccccaactctctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30055010 |
tccatcttgcttattttcatctcaaactttaacttctcttgacctttctattcacgttcgtattgtagtatttaacaaagtatacttccccaactctctt |
30054911 |
T |
|
| Q |
101 |
aatttgcctgctttaaccaccttggctgtaaggttcttccactttcgcgctggcgatgatggttgaatactttggtcattgaaagttttatacttgtgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30054910 |
aatttgcctgctttaaccaccttggctgtaaggttcttccactttcgcgctggcgatgatggttgaatactttggtcattgaaagttttagacttgtgga |
30054811 |
T |
|
| Q |
201 |
ggatgcagaaactctttgtatatcaagtgacacacttgtcaatttgactat------gtatggat---------atgctagtttgatgtgcaacatatct |
285 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
30054810 |
ggatgtagaaactctttgtatatcaagtgacacacttgtcaatttgactatatatgggtatggatttgataccaatgctagtttgattggcaacatatct |
30054711 |
T |
|
| Q |
286 |
gctcatttgctttccaacttttcttttattggatctctcaaccaaaaaccatgccatatccatctttgttctgttaaacacgtttacaaggatgcagaca |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
30054710 |
gctcatttgctttccaacttttcttttattggatctctcaaccaaaaaccatgccatatccatctttgttctgttaaacatgtttacatggatgcagaca |
30054611 |
T |
|
| Q |
386 |
tcggattc---aatcgcccgttggaagatgaatctgcagtcctactcaactggctactactagttttctaatatcaaatcattgactgtctcttctgata |
482 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30054610 |
tcggattcattaatcgccccttggaagacgaatctgcagtcctactcaactggctactac-agttttctaatatcaaatcattgactgtctcttctgata |
30054512 |
T |
|
| Q |
483 |
ctccacaggttctgctc |
499 |
Q |
| |
|
||| |||||| ||||| |
|
|
| T |
30054511 |
ctcttcaggttttgctc |
30054495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8400261 - 8400207
Alignment:
| Q |
1 |
tccatcttgcttattttcatctcaaactttaacttctcttgacctttctattcac |
55 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
8400261 |
tccatctttcttattttcatctcaaactttaacttctcttcacctttctcttcac |
8400207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 5368753 - 5368802
Alignment:
| Q |
5 |
tcttgcttattttcatctcaaactttaacttctcttgacctttctattca |
54 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
5368753 |
tcttgcttattttcatctcaaactttaacgtcacttgacctttctattca |
5368802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 5374510 - 5374559
Alignment:
| Q |
5 |
tcttgcttattttcatctcaaactttaacttctcttgacctttctattca |
54 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
5374510 |
tcttgcttattttcatctcaaactttaacgtcacttgacctttctattca |
5374559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 5367951 - 5367997
Alignment:
| Q |
9 |
gcttattttcatctcaaactttaacttctcttgacctttctattcac |
55 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
5367951 |
gcttattttcatctcaaaccttaacgtctcttgacctttctattcac |
5367997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 5362735 - 5362781
Alignment:
| Q |
9 |
gcttattttcatctcaaactttaacttctcttgacctttctattcac |
55 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
5362735 |
gcttattttcatctcaaaccttaacgtctcttgacctttccattcac |
5362781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 45906437 - 45906383
Alignment:
| Q |
201 |
ggatgcagaaactctttgtatatcaagtgacacacttgtcaatttgactatgtat |
255 |
Q |
| |
|
||||||| |||| ||||| |||||||||| |||||||||||||| ||||||||| |
|
|
| T |
45906437 |
ggatgcaaaaaccctttgcatatcaagtggaacacttgtcaatttaactatgtat |
45906383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 30597999 - 30597955
Alignment:
| Q |
3 |
catcttgcttattttcatctcaaactttaacttctcttgaccttt |
47 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
30597999 |
catcttgctttttttcatgtcacactttaacctctcttgaccttt |
30597955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University