View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7347_low_2 (Length: 877)
Name: NF7347_low_2
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 829; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 829; E-Value: 0
Query Start/End: Original strand, 17 - 865
Target Start/End: Complemental strand, 35490602 - 35489754
Alignment:
| Q |
17 |
tcaatgatgtgtacaattggaatcctagttgcaaatcttattaactacgggacttccaagcttgagaatggatggagaatttctttgggccttggagccg |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35490602 |
tcaatgatgtgtacaattggaatcctagttgcaaatcttattaactacgggacttccaagcttgagaatggatggagaatttctttgggccttggagccg |
35490503 |
T |
|
| Q |
117 |
ttccggcagtcatgttgtgtgtaggatcttttttcttaggtgacacaccaaactctttgattgaaagaggtcaaacagaaggagctaaggaaatgttgca |
216 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35490502 |
ttccagcagtcatgttgtgtgtaggatcttttttcttaggtgacacaccaaactctttgattgaaagaggtcaaacagaaggagctaaggaaatgttgca |
35490403 |
T |
|
| Q |
217 |
aaagattcgtggcattgataatgttgacgaggagtttcaagatctaatcgatgctagcgaggaagccaaaaaggtggagcacccatggaaaaatattaca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35490402 |
aaagattcgtggcattgataatgttgacgaggagtttcaagatctaatcgatgctagcgaggaagccaaaaaggtggagcacccatggaaaaatattaca |
35490303 |
T |
|
| Q |
317 |
caaacaagatacaggcctcaactcactttttgctctctcattccattcttccaacaactcaccggaatcaatgttatcatgttttatgcacctgtccttt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35490302 |
caaacaagatacaggcctcaactcactttttgctctctcattccattcttccaacaactcaccggaatcaatgttatcatgttttatgcacctgtccttt |
35490203 |
T |
|
| Q |
417 |
tcaaaactctgggctttggaaatgatgcttctctcatttctgcagtaattagcggaggtgttaatgttgttgctactttaatttccatctatacggtgga |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35490202 |
tcaaaactctgggctttggaaatgatgcttctctcatttctgcagtaattagcggaggtgttaatgttgttgctactttaatttccatctatacggtgga |
35490103 |
T |
|
| Q |
517 |
caaatttggacgaaggactttgttccttgaaggcggtatccaaatgtttatttgccaggtgaaaacttcaacttaactataattaattatttatattaat |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35490102 |
caaatttggacgaaggactttgttccttgaaggcggtatccaaatgtttatttgccaggtgaaaacttcaacttaactataattaattatttatattaat |
35490003 |
T |
|
| Q |
617 |
taagccttcaaaattattatacataagtcgtttccaagcataaataatataaaggatataatcattgattgtagattgctgttggaagtatgattgctat |
716 |
Q |
| |
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| T |
35490002 |
taagccttcaaaattattatacataagtcgtttccaagcataaataatataaaggatataatcattgattgtagattgctgttggaagtatgattgctat |
35489903 |
T |
|
| Q |
717 |
caaacttggagttagcggtgaaggctcgtttacaaaaaccgaagctgatcttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttgg |
816 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35489902 |
caaacttggagttagcggtgaaggctcgtttacaaaaactgaagctgatcttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttgg |
35489803 |
T |
|
| Q |
817 |
ggtgcgttgggatggttagttcctagtgaaatatgctctcttgatgtcc |
865 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||| |||| |
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|
| T |
35489802 |
ggtgcgctgggatggttagttcccagtgaaatatgctctcttgaagtcc |
35489754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 6e-27; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 83 - 492
Target Start/End: Original strand, 14232399 - 14232808
Alignment:
| Q |
83 |
aatggatggagaatttctttgggccttggagccgttccggcagtcatgttgtgtgtaggatcttttttcttaggtgacacaccaaactctttgattgaaa |
182 |
Q |
| |
|
|||||||||||| | ||||| || |||||||| || || ||| | | ||||| ||||||| |||| |||||||| |||||||| || |||||||||| |
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| T |
14232399 |
aatggatggagagtctctttaggtcttggagcagtgccagcaattcttttgtgcctaggatccctttttttaggtgaaacaccaaattccttgattgaaa |
14232498 |
T |
|
| Q |
183 |
gaggtcaaaca-gaaggagctaaggaaatgttgcaaaagattcgtggcattgataatgttgacgaggagtttcaagatctaatcgatgctagcgaggaag |
281 |
Q |
| |
|
|||| ||| || ||| || |||| ||||||| ||| ||| || || | ||| |||||||| || || | ||||||||| | |||||||| || |||| |
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|
| T |
14232499 |
gagg-caaccatgaaaaggcaaaggcaatgttgaaaaggatccgcggaactgaaaatgttgatgaagaatatcaagatcttgttgatgctagtgaagaag |
14232597 |
T |
|
| Q |
282 |
ccaaaaaggtggagcacccatggaaaaatattacacaaacaagatacaggcctcaactcactttttgctctctcattccattcttccaacaactcaccgg |
381 |
Q |
| |
|
| | | |||||| || |||||||| || ||||| ||| || ||| ||||||||||| ||||| | | |||||||||||||||||||||| ||||| |
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|
| T |
14232598 |
ctagtagggtggaacatccatggaagaacattactcaaccagaatataggcctcaacttactttcgtcagtttcattccattcttccaacaacttaccgg |
14232697 |
T |
|
| Q |
382 |
aatcaatgttatcatgttttatgcacctgtccttttcaaaactctgggctttggaaatgatgcttctctcatttctgcagtaattagcggaggtgttaat |
481 |
Q |
| |
|
|| ||||||||||||||||| || || |||||||| || | | |||||||| |||||||||| ||||| ||| | || ||||| || ||||| ||| |
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| T |
14232698 |
cattaatgttatcatgttttacgctcccgtcctttttaagatcttaggctttggtgatgatgcttccctcatgtcttcggttattagtggtggtgtcaat |
14232797 |
T |
|
| Q |
482 |
gttgttgctac |
492 |
Q |
| |
|
||||||||||| |
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|
| T |
14232798 |
gttgttgctac |
14232808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 83 - 492
Target Start/End: Original strand, 14242073 - 14242482
Alignment:
| Q |
83 |
aatggatggagaatttctttgggccttggagccgttccggcagtcatgttgtgtgtaggatcttttttcttaggtgacacaccaaactctttgattgaaa |
182 |
Q |
| |
|
|||||||||||| | ||||| || |||||||| || || ||| | | ||||| ||||||| |||| |||||||| |||||||| || |||||||||| |
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| T |
14242073 |
aatggatggagagtctctttaggtcttggagcagtgccagcaattcttttgtgcctaggatccctttttttaggtgaaacaccaaattccttgattgaaa |
14242172 |
T |
|
| Q |
183 |
gaggtcaaaca-gaaggagctaaggaaatgttgcaaaagattcgtggcattgataatgttgacgaggagtttcaagatctaatcgatgctagcgaggaag |
281 |
Q |
| |
|
|||| ||| || ||| || |||| ||||||| ||| ||| || || | ||| |||||||| || || | ||||||||| | |||||||| || |||| |
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|
| T |
14242173 |
gagg-caaccatgaaaaggcaaaggcaatgttgaaaaggatccgcggaactgaaaatgttgatgaagaatatcaagatcttgttgatgctagtgaagaag |
14242271 |
T |
|
| Q |
282 |
ccaaaaaggtggagcacccatggaaaaatattacacaaacaagatacaggcctcaactcactttttgctctctcattccattcttccaacaactcaccgg |
381 |
Q |
| |
|
| | | |||||| || |||||||| || ||||| ||| || ||| ||||||||||| ||||| | | |||||||||||||||||||||| ||||| |
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|
| T |
14242272 |
ctagtagggtggaacatccatggaagaacattactcaaccagaatataggcctcaacttactttcgtcagtttcattccattcttccaacaacttaccgg |
14242371 |
T |
|
| Q |
382 |
aatcaatgttatcatgttttatgcacctgtccttttcaaaactctgggctttggaaatgatgcttctctcatttctgcagtaattagcggaggtgttaat |
481 |
Q |
| |
|
|| ||||||||||||||||| || || |||||||| || | | |||||||| |||||||||| ||||| ||| | || ||||| || ||||| ||| |
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| T |
14242372 |
cattaatgttatcatgttttacgctcccgtcctttttaagatcttaggctttggtgatgatgcttccctcatgtcttcggttattagtggtggtgtcaat |
14242471 |
T |
|
| Q |
482 |
gttgttgctac |
492 |
Q |
| |
|
||||||||||| |
|
|
| T |
14242472 |
gttgttgctac |
14242482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 756 - 857
Target Start/End: Original strand, 14233080 - 14233181
Alignment:
| Q |
756 |
cgaagctgatcttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctct |
855 |
Q |
| |
|
|||||| || |||||||| ||||||| ||| |||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||| || |
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|
| T |
14233080 |
cgaagccgaccttctcttgttctttatttgtgcatatgttgcggcatttgcatggtcttggggaccattgggttggttagtgcctagtgaaatatgcgct |
14233179 |
T |
|
| Q |
856 |
ct |
857 |
Q |
| |
|
|| |
|
|
| T |
14233180 |
ct |
14233181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 756 - 857
Target Start/End: Original strand, 14242754 - 14242855
Alignment:
| Q |
756 |
cgaagctgatcttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctct |
855 |
Q |
| |
|
|||||| || |||||||| ||||||| ||| |||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||| ||||| || |
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|
| T |
14242754 |
cgaagccgaccttctcttgttctttatttgtgcatatgttgcggcatttgcatggtcttggggaccattgggttggttagtgcctagtgaagtatgcgct |
14242853 |
T |
|
| Q |
856 |
ct |
857 |
Q |
| |
|
|| |
|
|
| T |
14242854 |
ct |
14242855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 492
Target Start/End: Original strand, 14240363 - 14240709
Alignment:
| Q |
138 |
taggatcttttttcttaggtgacacaccaaactctttgattgaaagaggtcaaaca-gaaggagctaaggaaatgttgcaaaagattcgtggcattgata |
236 |
Q |
| |
|
||||||| |||| |||||||| |||||||| || ||||||||| |||| ||| || ||| ||| |||| ||||||| ||| ||| ||||| | || | |
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|
| T |
14240363 |
taggatccctttttttaggtgaaacaccaaattccttgattgaacgagg-caaccaagaaaaagcaaaggcaatgttgaaaaggatccgtggaaccgaaa |
14240461 |
T |
|
| Q |
237 |
atgttgacgaggagtttcaagatctaatcgatgctagcgaggaagccaaaaaggtggagcacccatggaaaaatattacacaaacaagatacaggcctca |
336 |
Q |
| |
|
||||||| || || | ||||||||| | |||||||| || ||||| | || ||||| || ||||| || || ||||| ||| || ||| |||||||| |
|
|
| T |
14240462 |
atgttgatgaagaatatcaagatcttgttgatgctagtgaagaagctagtaatgtggaacatccatgcaataacattactcaaccagaatataggcctca |
14240561 |
T |
|
| Q |
337 |
actcactttttgctctctcattccattcttccaacaactcaccggaatcaatgttatcatgttttatgcacctgtccttttcaaaactctgggctttgga |
436 |
Q |
| |
|
|||||||||| |||||||||||||||| |||| ||| | || ||||||||||||||||| || | |||||||| || | | |||||||| |
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|
| T |
14240562 |
actcactttt--------cattccattcttccaagaacttaccagcattaatgttatcatgttttacgctctcgtcctttttaagatcttaggctttggt |
14240653 |
T |
|
| Q |
437 |
aatgatgcttctctcatttctgcagtaattagcggaggtgttaatgttgttgctac |
492 |
Q |
| |
|
|||| || || ||||| ||||| || ||||| || ||||| |||||||||||||| |
|
|
| T |
14240654 |
gatgaggcatccctcatgtctgcggttattagtggtggtgtcaatgttgttgctac |
14240709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 36202266 - 36202318
Alignment:
| Q |
359 |
ccattcttccaacaactcaccggaatcaatgttatcatgttttatgcacctgt |
411 |
Q |
| |
|
||||||||||||||| | || || ||||||||||||||||||||||||||||| |
|
|
| T |
36202266 |
ccattcttccaacaatttacaggcatcaatgttatcatgttttatgcacctgt |
36202318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 35922795 - 35922740
Alignment:
| Q |
356 |
attccattcttccaacaactcaccggaatcaatgttatcatgttttatgcacctgt |
411 |
Q |
| |
|
|||||||||||||| ||| | || |||||||||||||| ||||||||||||||||| |
|
|
| T |
35922795 |
attccattcttccagcaatttacaggaatcaatgttataatgttttatgcacctgt |
35922740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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