View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_23 (Length: 431)
Name: NF7347_low_23
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 8578686 - 8578280
Alignment:
| Q |
19 |
ataacgatgttgatgtttccaagatcgtttatttcatcctagtagccaaaatatttcttcctgcaatccatatactatttcatcctgcaagtcacgatga |
118 |
Q |
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| T |
8578686 |
ataacgatgttgatgtttccaagatcgtttatttcatcctagtagccaaaatatttcttcctgcaatccatatactatttcatcctgcaagtcacgatga |
8578587 |
T |
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| Q |
119 |
aaaacaagaacaaaatagagtagtaagcaagcaatcaattttgaacacatgattaaaataacaatgccaattataaaattaaaggagaaaatgatgtaga |
218 |
Q |
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| T |
8578586 |
aaaacaagaacaaaatagagtagtaagcaagcaatcaattttgaacacatgattaaaataacaatgccaattataaaattaaaggagaaaatgatgtaga |
8578487 |
T |
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| Q |
219 |
cctagttattgtaccctaacaccatcggtgatggatgtccttccccaagatgagcgagttcaacacaggatagatcggcaaaatcattgaagccgagttt |
318 |
Q |
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| T |
8578486 |
ccaagttattgtaccctaacaccatcggtgatggatgtccttccccaagatgagcgagttcaacacaggatagatcggcaaaatcattgaagccgagttt |
8578387 |
T |
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| Q |
319 |
ggaaccagaatttccgatttgattatggtgtgtgatcattgcataccttttcttaaacactttgtacctatagcgcttctctttctttctccgaagagta |
418 |
Q |
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| T |
8578386 |
ggaaccagaatttccgatttgattatggtgtgtgatcattgcataccttttcttaaacactttgtacctatagcgcttctctttctttctccgaagagta |
8578287 |
T |
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| Q |
419 |
ttatcta |
425 |
Q |
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| T |
8578286 |
taatcta |
8578280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 8553994 - 8554163
Alignment:
| Q |
33 |
gtttccaagatcgtttatttcatcctagtagccaaaatatttcttcctgcaatccatatactatttcatcctgcaagtcacgatgaaaaacaagaacaaa |
132 |
Q |
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| T |
8553994 |
gtttccaagattgtttatttcatcctagtagccaaaatatttcttcctgcaatccatataatatttcatcctgcaaggcacaataaaaaacaagaacaaa |
8554093 |
T |
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| Q |
133 |
atagagtagtaagcaagcaatcaattttgaacacatgattaaaataacaatgccaattataaaattaaaggag |
205 |
Q |
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| T |
8554094 |
atatactagtaagcaagcaatcaattttgaacac---attaaaataacaatgccaattatgaaattaaaggag |
8554163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 34 - 172
Target Start/End: Original strand, 33443039 - 33443178
Alignment:
| Q |
34 |
tttccaagatcgtttatttcatcctagtagccaaaatatttcttcctgcaatccatatactatttcatcctgcaagtcacgatg-aaaaacaagaacaaa |
132 |
Q |
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|||||||||||| || ||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||| |
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| T |
33443039 |
tttccaagatcgcttttttcatcttaatagccaaaatatttcttcctgcaatccatataatatttcatcctgcaaggcacagtgaaaaaacaagaacaaa |
33443138 |
T |
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| Q |
133 |
atagagtagtaagcaagcaatcaattttgaacacatgatt |
172 |
Q |
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| T |
33443139 |
atatactagtaagcaagcaagcaattttgaatacatgatt |
33443178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 230 - 404
Target Start/End: Original strand, 33443289 - 33443463
Alignment:
| Q |
230 |
taccctaacaccatcggtgatggatgtccttccccaagatgagcgagttcaacacaggatagatcggcaaaatcattgaagccgagtttggaaccagaat |
329 |
Q |
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|||||||| | ||| ||||||||| ||||||||| ||| ||||| |||||||| ||||||||||| || |||||||||| || ||||| |||||||||| |
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| T |
33443289 |
taccctaaaatcattggtgatggacgtccttccctaagttgagcaagttcaacccaggatagatcagcgaaatcattgaggctgagttcagaaccagaat |
33443388 |
T |
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| Q |
330 |
ttccgatttgattatggtgtgtgatcattgcataccttttcttaaacactttgtacctatagcgcttctctttct |
404 |
Q |
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| T |
33443389 |
ttccgatttgattgtgtcgggtgaccgttgcataccttttcttaaacactttgaacctgtagtgcttctctttct |
33443463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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