View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_24 (Length: 424)
Name: NF7347_low_24
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 193 - 405
Target Start/End: Complemental strand, 41755511 - 41755305
Alignment:
| Q |
193 |
aaggataattgattttcttaacaagcgttattgatagtactttcttcgtatagtattaaatcatttcattattccatattcataatttcatatggaccaa |
292 |
Q |
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| T |
41755511 |
aaggataattgattttcttaacaagcgttattgatactactttcttcgtatagtattaaatcatttcattattccatattcataatttcatatggaccaa |
41755412 |
T |
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| Q |
293 |
taaataggacatttgtacttttgaataaaccaataaataggacgtataaatgatttattttatatattaatattaaagagatggggctgtcaatatttat |
392 |
Q |
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| T |
41755411 |
taaataggacatttgtacttttgaataaaccaataaataggacgtataaatgatttattttatata------ttaaagagatggggctgtcaatatttat |
41755318 |
T |
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| Q |
393 |
tgatagtcaatac |
405 |
Q |
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| T |
41755317 |
tgatagtcaatac |
41755305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 35 - 175
Target Start/End: Complemental strand, 41755632 - 41755493
Alignment:
| Q |
35 |
ggtaccgttgaagattttggtaccgcaaaaggacagcacaattgacaaaactcatccgacatcggctgactaattcagcccataaataatttggtaaatg |
134 |
Q |
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| T |
41755632 |
ggtaccgttgaagattttggtaccgcaaaaggatagcacaattgacaaaactcatccgacatcggctgactaattcagcccataaataatttggtaaatg |
41755533 |
T |
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| Q |
135 |
ttaaaaatattaaatacggtataaggataattgattttctt |
175 |
Q |
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| T |
41755532 |
tt-aaaatattaaatacggtataaggataattgattttctt |
41755493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 41761372 - 41761333
Alignment:
| Q |
363 |
tattaaagagatggggctgtcaatatttattgatagtcaa |
402 |
Q |
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| T |
41761372 |
tattaaagagatgggtttgtcaatatttattgatagtcaa |
41761333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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