View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_26 (Length: 407)
Name: NF7347_low_26
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 33964498 - 33964300
Alignment:
| Q |
18 |
atatagtaggatggtacaccttctatgctcttagaaattaaggaatgggnnnnnnnttgagcaaagatcttgtaacgcttacctaaattttttgaagcat |
117 |
Q |
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| T |
33964498 |
atatagtaggatggtacaccttctatgctcttagaaagtaaggaatgggaaaaaaattgagcaaagatcttgtaacgcttacctaaaatttttgaagcat |
33964399 |
T |
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| Q |
118 |
aattatcttgaagtccatttgtcgtagttagggttcttatagtgtttgaaggttgtattccaaatttcatgatattgaaaagtccattggtatgttattc |
217 |
Q |
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| T |
33964398 |
aat-atcttgaagtccatttgtcgtagttagggttcttatagtgtttgaaggttgtattccaaatttcatgatattgaaaagtccattggtatggtattc |
33964300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 250 - 389
Target Start/End: Complemental strand, 33964124 - 33963985
Alignment:
| Q |
250 |
atattcaaatgaatcatgtgatacaaatcaaagaaaacaaacagacaatatgatgaacacaaaaaggctagtcctaaacaagaattgtcttatatctgaa |
349 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33964124 |
atattcaaatgaatcatgtgatgcaaatcaaagaaaacaaacagacaatatgatgaacacaaaaaggctagtcctaaacaagaattgtcttatatctgat |
33964025 |
T |
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| Q |
350 |
ttatttttcctgatttgattagcctctatgttcttatata |
389 |
Q |
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| T |
33964024 |
ttatttttccttatttgattagcctctatgttcttatata |
33963985 |
T |
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