View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_28 (Length: 396)
Name: NF7347_low_28
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 12 - 380
Target Start/End: Complemental strand, 56469152 - 56468784
Alignment:
| Q |
12 |
atgaacaagctgagggcacatgactttggaaagccaggttcggggaaagggataagactggatgatttaaagatatcagaggaagagatggaaatgtatg |
111 |
Q |
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| T |
56469152 |
atgaacaagctgagggcacatgactttggaaagccgggttcggggaaagggataagactggatgatttaaagatatcagaggaagagatggaaatgtatg |
56469053 |
T |
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| Q |
112 |
ttgatatgcatcatattacaaacaagtcatcgtatacagttgtggaaacaatgtctctagctaaaactgcagttcttttccgtgagcttggcctcaggca |
211 |
Q |
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| T |
56469052 |
ttgatatgcatcatattaccaacaagtcatcgtatacagttgtggaaacaatgtctctagctaaaactgcagttcttttccgtgagcttggcctcaggca |
56468953 |
T |
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| Q |
212 |
tttgttggtggtgccaaagacatccggagtaagaaacaatatactattacaatcttgaataaacatatccatgtatttaagtatacattggctgactttg |
311 |
Q |
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| T |
56468952 |
tttgttggtggtgccaaagacatccggagtaagaaacaatatactattacaatcttgaataaacatatccatgcatttaagtatacattggctgactttg |
56468853 |
T |
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| Q |
312 |
caatcattaattacaattatccttgtttgttggctgggagtgagtattaactaacaattactaatattt |
380 |
Q |
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| T |
56468852 |
caatcattaattacaattatccttgtatgttggctgggagtgagtattaactaacaattactaatattt |
56468784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 244
Target Start/End: Original strand, 155492 - 155640
Alignment:
| Q |
96 |
gagatggaaatgtatgttgatatgcatcatattacaaacaagtcatcgtatacagttgtggaaacaatgtctctagctaaaactgcagttcttttccgtg |
195 |
Q |
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| T |
155492 |
gagatggaaatgtatgttgatcttcatccaatcacaaatacttctccatatactgttgttgaaacaatgtctcttgcaaaagctgctcttctgtttcggg |
155591 |
T |
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| Q |
196 |
agcttggcctcaggcatttgttggtggtgccaaagacatccggagtaag |
244 |
Q |
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| T |
155592 |
agcttggactcaggcatttgctagttgtgcctaagaaaccaggagtaag |
155640 |
T |
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