View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7347_low_3 (Length: 812)

Name: NF7347_low_3
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7347_low_3
NF7347_low_3
[»] chr1 (26 HSPs)
chr1 (19-609)||(39914639-39915223)
chr1 (673-805)||(39914401-39914537)
chr1 (533-621)||(38748743-38748831)
chr1 (507-616)||(39156231-39156340)
chr1 (531-608)||(47187856-47187933)
chr1 (533-621)||(8794412-8794500)
chr1 (535-616)||(604458-604537)
chr1 (501-615)||(34232735-34232849)
chr1 (508-616)||(14746227-14746334)
chr1 (531-616)||(2864137-2864221)
chr1 (532-608)||(8365498-8365574)
chr1 (566-616)||(43397042-43397092)
chr1 (507-608)||(39150552-39150653)
chr1 (551-608)||(44329610-44329667)
chr1 (531-621)||(4851267-4851356)
chr1 (508-610)||(34409705-34409807)
chr1 (526-616)||(42791169-42791259)
chr1 (532-585)||(8372990-8373043)
chr1 (532-616)||(38491216-38491300)
chr1 (531-611)||(45640541-45640621)
chr1 (533-596)||(40460770-40460833)
chr1 (537-616)||(44829272-44829351)
chr1 (531-621)||(3982259-3982349)
chr1 (558-616)||(26811259-26811317)
chr1 (531-621)||(32562375-32562465)
chr1 (507-608)||(48022388-48022489)
[»] chr8 (22 HSPs)
chr8 (507-616)||(28207594-28207703)
chr8 (533-621)||(33013041-33013129)
chr8 (531-615)||(4384163-4384247)
chr8 (519-619)||(12684518-12684618)
chr8 (532-610)||(13028124-13028202)
chr8 (531-616)||(167871-167956)
chr8 (532-621)||(33949572-33949661)
chr8 (532-621)||(37813424-37813514)
chr8 (531-616)||(27801253-27801338)
chr8 (528-616)||(1369886-1369974)
chr8 (532-613)||(16723225-16723306)
chr8 (507-616)||(42636393-42636502)
chr8 (539-597)||(2250356-2250414)
chr8 (531-612)||(9024482-9024563)
chr8 (531-616)||(24695741-24695826)
chr8 (551-616)||(35901945-35902010)
chr8 (532-616)||(2258118-2258202)
chr8 (558-616)||(1135182-1135240)
chr8 (558-616)||(3520835-3520893)
chr8 (538-599)||(2888764-2888825)
chr8 (538-599)||(3146037-3146098)
chr8 (558-599)||(5588981-5589022)
[»] chr7 (16 HSPs)
chr7 (532-671)||(39320954-39321093)
chr7 (532-621)||(35731282-35731371)
chr7 (543-621)||(3692883-3692961)
chr7 (532-616)||(28770472-28770556)
chr7 (507-594)||(44537311-44537398)
chr7 (507-616)||(27123244-27123353)
chr7 (508-620)||(44592837-44592949)
chr7 (549-616)||(7653588-7653655)
chr7 (531-621)||(27337692-27337781)
chr7 (531-616)||(7968586-7968671)
chr7 (507-616)||(28663166-28663273)
chr7 (507-616)||(43234760-43234869)
chr7 (535-611)||(21727438-21727514)
chr7 (531-591)||(32699804-32699863)
chr7 (558-616)||(42936028-42936085)
chr7 (548-621)||(18801051-18801124)
[»] chr6 (11 HSPs)
chr6 (532-619)||(1840978-1841065)
chr6 (531-621)||(19293475-19293565)
chr6 (532-608)||(28874394-28874470)
chr6 (531-616)||(2692457-2692542)
chr6 (508-616)||(9762774-9762881)
chr6 (532-596)||(11720925-11720989)
chr6 (553-616)||(32823693-32823756)
chr6 (581-619)||(30801785-30801823)
chr6 (566-616)||(31855083-31855133)
chr6 (531-616)||(26669306-26669391)
chr6 (507-579)||(30509286-30509358)
[»] chr4 (23 HSPs)
chr4 (495-616)||(45900176-45900297)
chr4 (507-616)||(7444412-7444522)
chr4 (532-621)||(37138184-37138273)
chr4 (531-616)||(51834908-51834993)
chr4 (540-616)||(31429280-31429356)
chr4 (531-618)||(51736348-51736435)
chr4 (531-616)||(7852571-7852656)
chr4 (507-616)||(8297841-8297950)
chr4 (507-616)||(49400583-49400691)
chr4 (539-616)||(50341894-50341971)
chr4 (533-616)||(35777726-35777809)
chr4 (532-608)||(20394633-20394709)
chr4 (537-616)||(50426989-50427068)
chr4 (531-621)||(25115285-25115375)
chr4 (531-616)||(37383782-37383866)
chr4 (513-599)||(48337532-48337618)
chr4 (566-616)||(53014233-53014283)
chr4 (567-616)||(42222985-42223034)
chr4 (532-616)||(27953068-27953151)
chr4 (549-616)||(34391734-34391801)
chr4 (566-621)||(43969207-43969262)
chr4 (533-616)||(47995764-47995847)
chr4 (532-616)||(49084427-49084512)
[»] chr5 (15 HSPs)
chr5 (507-621)||(15720037-15720151)
chr5 (531-616)||(7719198-7719283)
chr5 (532-616)||(30501167-30501251)
chr5 (532-616)||(30541510-30541594)
chr5 (535-616)||(9276607-9276688)
chr5 (532-616)||(16667319-16667403)
chr5 (532-616)||(30104799-30104883)
chr5 (533-616)||(2918624-2918707)
chr5 (510-671)||(8221096-8221256)
chr5 (533-616)||(18229629-18229712)
chr5 (531-579)||(141866-141914)
chr5 (532-611)||(13480013-13480093)
chr5 (549-616)||(3140826-3140893)
chr5 (531-616)||(34899163-34899248)
chr5 (531-616)||(39558794-39558879)
[»] chr2 (19 HSPs)
chr2 (532-616)||(1334911-1334995)
chr2 (531-656)||(41933125-41933250)
chr2 (507-616)||(4762319-4762428)
chr2 (537-616)||(19890216-19890295)
chr2 (533-606)||(40789703-40789777)
chr2 (531-616)||(15505538-15505623)
chr2 (507-616)||(38533373-38533480)
chr2 (532-616)||(9448981-9449064)
chr2 (535-617)||(31452372-31452454)
chr2 (532-616)||(19514866-19514950)
chr2 (535-621)||(14295626-14295712)
chr2 (555-616)||(43617514-43617575)
chr2 (542-621)||(9173728-9173808)
chr2 (533-616)||(31017335-31017418)
chr2 (535-671)||(37993076-37993212)
chr2 (507-621)||(11944895-11945009)
chr2 (532-621)||(13538391-13538480)
chr2 (532-621)||(20064906-20064995)
chr2 (531-616)||(38533896-38533980)
[»] chr3 (13 HSPs)
chr3 (532-621)||(39551878-39551966)
chr3 (530-648)||(47638888-47639006)
chr3 (531-599)||(48180215-48180283)
chr3 (547-616)||(45988253-45988321)
chr3 (507-616)||(42846032-42846143)
chr3 (531-621)||(52638180-52638270)
chr3 (532-597)||(49362400-49362465)
chr3 (497-553)||(46547872-46547928)
chr3 (566-621)||(16663006-16663061)
chr3 (537-616)||(51351277-51351356)
chr3 (532-616)||(26900050-26900136)
chr3 (558-599)||(22730530-22730571)
chr3 (531-616)||(52249320-52249405)
[»] scaffold0419 (1 HSPs)
scaffold0419 (532-608)||(1060-1136)
[»] scaffold1444 (2 HSPs)
scaffold1444 (549-621)||(954-1026)
scaffold1444 (563-621)||(1726-1784)
[»] scaffold0204 (1 HSPs)
scaffold0204 (513-599)||(25054-25140)
[»] scaffold0036 (1 HSPs)
scaffold0036 (533-608)||(62560-62635)
[»] scaffold0268 (1 HSPs)
scaffold0268 (563-621)||(20270-20328)
[»] scaffold0119 (1 HSPs)
scaffold0119 (531-616)||(1402-1487)


Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 609
Target Start/End: Complemental strand, 39915223 - 39914639
Alignment:
Q  19 agattcccggagaaccgagcgtgggcttaatattaaacccatcaattactagtatctcaatttattaatttatctttaaatcttaatcacgatatattgt 118  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39915223 agattcccggagaaccgagcgtgggcttaatattaaacccattaattactagtatctcaatttattaatttatctttaaatcttaatcacgatatatggt 39915124  T
Q  119 tcataataaaatgagttatacgtgtaggacaactaagcatgttctatatattgttttactaagtaatgagtat-aaaaatgtttggtgtacatccatatc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39915123 tcataataaaatgagttatacgtgtaggacaactaagcatgttctatatattgttttactaagtaatgagtatgaaaaatgtttggtgtacatccatatc 39915024  T
Q  218 catatgaatggagttacatcttcagagataaagaaataaaagatagatatgataggaatagtgcttgagataaaatgaagtgctg-nnnnnnnnnnnnnn 316  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||                   
T  39915023 catatgaatgtagttacatcttgagagataaagaaataaaagatagatatgataggaatagtgctcgagataaaatgaagtgctgaaaaaatatataaaa 39914924  T
Q  317 nnnnnnntcaaagtgttcaaatatcattattattaaatgattatttacttatttttgtaagttgaactcatctatacttgttaagactctcttataatct 416  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  39914923 aaaaaaatcaaagtgttcaaatatcattattattaaatgattatttacttatttttgtaagttgaactcatctatacttgttaagactc--------tct 39914832  T
Q  417 tattgaatgaaacaagatattaacataaatgtatgttaaggatacatgtcttttttaacacaaaatggtgcattcattattttaaaatgtgtcttgttaa 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39914831 tattgaatgaaacaagatattaacataaatgtatgttaaggatacatgtcttttttaacacaaaatggtgcattcattattttaaaatgggtcttgttaa 39914732  T
Q  517 cgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacac 609  Q
    || ||||| | |  |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||    
T  39914731 cgagtgcttccgggacactctttaagcataccaaatttaacaattgttcttttaaaaagtcaactattacaattttcaatgcactcaatacac 39914639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 673 - 805
Target Start/End: Complemental strand, 39914537 - 39914401
Alignment:
Q  673 caaagctctcggacatcaatgacatgcaagtgctg----cagtatatacatttagaggatttttaattttattctagtactagtacatgtctaaaactgt 768  Q
    |||||||||||||||||||||||||| |||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39914537 caaagctctcggacatcaatgacatgtaagtgcttgctacagtatatacatttagaggatttttaattttattctagtactagtacatgtctaaaactgt 39914438  T
Q  769 atgtacgtatatctaattctagctatattcttcgaca 805  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  39914437 atgtacgtatatctaattctagctattttcttggaca 39914401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 533 - 621
Target Start/End: Complemental strand, 38748831 - 38748743
Alignment:
Q  533 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    |||||||||||||||||||||||  |||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||    
T  38748831 actctttaagcataccaaatttagaaattattcttttaaaaagtcaactattataattttcaatgcactcaatacacaacttttcataa 38748743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 507 - 616
Target Start/End: Original strand, 39156231 - 39156340
Alignment:
Q  507 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 606  Q
    |||||||||||| |||| ||||| |||||||||||||||   |||||||  |||| |||||||||||| ||||||| || ||||||||||||| ||||||    
T  39156231 gtcttgttaacgagtgcccctgagacactctttaagcatcaaaaatttagtaattattcttttaaaaagtcaactactacaatttccaatgcattcaata 39156330  T
Q  607 cacaactttt 616  Q
    ||||| ||||    
T  39156331 cacaattttt 39156340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 531 - 608
Target Start/End: Complemental strand, 47187933 - 47187856
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaataca 608  Q
    ||||||||||||||| |||||||||  |||| ||| ||||||||||||||||||||||||||||||||| ||||||||    
T  47187933 acactctttaagcatcccaaatttagtaattattcatttaaaaaatcaactattataatttccaatgcattcaataca 47187856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 533 - 621
Target Start/End: Original strand, 8794412 - 8794500
Alignment:
Q  533 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    ||||||||||||| | |||||||  |||| |||||||||||| |||||||||||||||| |||||||||| ||||||||||||| ||||    
T  8794412 actctttaagcatcctaaatttagtaattattcttttaaaaagtcaactattataattttcaatgcactccatacacaactttttataa 8794500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 535 - 616
Target Start/End: Complemental strand, 604537 - 604458
Alignment:
Q  535 tctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||||||||||||||||||| |  | ||||||||| |||| ||||||||||||||||||||||||||||||| ||||    
T  604537 tctttaagcataccaaatttaacaaat--tattttaaaaagtcaattattataatttccaatgcactcaatacacaattttt 604458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 501 - 615
Target Start/End: Complemental strand, 34232849 - 34232735
Alignment:
Q  501 aaatgtgtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcac 600  Q
    ||||| |||||||||||| ||||||  |  ||||||||||||||| |  |||||| ||||| |||||||||||| |||||||||| ||||| ||||||      
T  34232849 aaatgggtcttgttaacgagtgctcacgggacactctttaagcatccttaatttagcaattattcttttaaaaagtcaactattacaattttcaatgctt 34232750  T
Q  601 tcaatacacaacttt 615  Q
    |||||||||||||||    
T  34232749 tcaatacacaacttt 34232735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 508 - 616
Target Start/End: Complemental strand, 14746334 - 14746227
Alignment:
Q  508 tcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatac 607  Q
    ||||||||||| |||| ||||  |||||||||||| |||||||||||| ||||| || | |||||||||||||| ||||||||| ||||||  | |||||    
T  14746334 tcttgttaacgagtgcccctgg-acactctttaagtataccaaatttagcaattattttcttaaaaaatcaactgttataattttcaatgctatgaatac 14746236  T
Q  608 acaactttt 616  Q
    |||||||||    
T  14746235 acaactttt 14746227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 531 - 616
Target Start/End: Original strand, 2864137 - 2864221
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||||| ||| ||| |||||  |||| |||||| ||||| |||||||||| ||||||||||||| ||||||||||||||||    
T  2864137 acactctttaaacatcccatatttaggaattattcttt-aaaaagtcaactattacaatttccaatgcattcaatacacaactttt 2864221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 532 - 608
Target Start/End: Original strand, 8365498 - 8365574
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaataca 608  Q
    |||||||||| ||| | |||||||| |||| ||||||||||||||||||||||| ||| | ||||||| ||||||||    
T  8365498 cactctttaaacatcctaaatttaataattattcttttaaaaaatcaactattacaatcttcaatgcattcaataca 8365574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 566 - 616
Target Start/End: Complemental strand, 43397092 - 43397042
Alignment:
Q  566 ttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  43397092 ttttaaaaagtcaactattataatttccaatgcatttaatacacaactttt 43397042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 507 - 608
Target Start/End: Original strand, 39150552 - 39150653
Alignment:
Q  507 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 606  Q
    |||||||||||| |||| || |   |||||||||||||| | |||||||  |||| ||||| |||||| |||||||||| ||||| ||||||| ||||||    
T  39150552 gtcttgttaacgagtgcccccggggcactctttaagcatcctaaatttagtaattattcttgtaaaaagtcaactattacaatttacaatgcattcaata 39150651  T
Q  607 ca 608  Q
    ||    
T  39150652 ca 39150653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 551 - 608
Target Start/End: Original strand, 44329610 - 44329667
Alignment:
Q  551 atttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaataca 608  Q
    |||||| |||| |||||||||||| |||||||||||||||| ||||||| ||||||||    
T  44329610 atttaataattattcttttaaaaagtcaactattataattttcaatgcattcaataca 44329667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 531 - 621
Target Start/End: Complemental strand, 4851356 - 4851267
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    |||||||||||||||  ||| ||||| |||| ||| |||||||| |||||||||| |||||| |||||||| | ||| |||||||| ||||    
T  4851356 acactctttaagcatgtcaattttaaaaattattc-tttaaaaagtcaactattacaatttcaaatgcacttactacccaacttttcataa 4851267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 508 - 610
Target Start/End: Original strand, 34409705 - 34409807
Alignment:
Q  508 tcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatac 607  Q
    ||||||||||| ||||  | || | |||||||||||||   |||||||  |||| || ||||  |||||||| ||||||||||||||||||| |||||||    
T  34409705 tcttgttaacgagtgcgtccgagatactctttaagcattttaaatttagtaattttttttttttaaaatcaattattataatttccaatgcattcaatac 34409804  T
Q  608 aca 610  Q
    |||    
T  34409805 aca 34409807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 616
Target Start/End: Complemental strand, 42791259 - 42791169
Alignment:
Q  526 ctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||| |||||||||||||||   ||||||||||||| || ||||||||| |||||||| |  ||||  |||||| |||||||||| |||||    
T  42791259 ctgagacactctttaagcatcttaaatttaacaattatttttttaaaaagtcaactatcactattttaaatgcattcaatacacagctttt 42791169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 532 - 585
Target Start/End: Original strand, 8372990 - 8373043
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactatta 585  Q
    |||||||||| ||| | |||||||| |||| |||||||||||||||||||||||    
T  8372990 cactctttaaacatcctaaatttaataattattcttttaaaaaatcaactatta 8373043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 532 - 616
Target Start/End: Original strand, 38491216 - 38491300
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||| || || |||||||||  |||| || | ||||||| |||||||||| ||||| ||||||| ||||||||||| ||||    
T  38491216 cactctttcagaatcccaaatttagtaattattatgttaaaaagtcaactattacaatttacaatgcattcaatacacaattttt 38491300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 531 - 611
Target Start/End: Original strand, 45640541 - 45640621
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaa 611  Q
    ||||| || |||||| |||||||||| || | |||||| ||||| |||| ||||||||||| ||||||| ||| |||||||    
T  45640541 acacttttaaagcatcccaaatttaagaactattctttcaaaaagtcaattattataattttcaatgcattcattacacaa 45640621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 596
Target Start/End: Complemental strand, 40460833 - 40460770
Alignment:
Q  533 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaat 596  Q
    ||||||||||||| | |||||||| |||| ||| ||||||||||||| ||||| | ||||||||    
T  40460833 actctttaagcatccaaaatttaataattattcatttaaaaaatcaattattacagtttccaat 40460770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 616
Target Start/End: Original strand, 44829272 - 44829351
Alignment:
Q  537 tttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||| |||||||||  |||| |||||| ||||  |||||||||| |||||  ||| || ||||||||||||||||    
T  44829272 tttaagcatcccaaatttagtaattattctttaaaaaggtcaactattacaatttttaatacattcaatacacaactttt 44829351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 531 - 621
Target Start/End: Original strand, 3982259 - 3982349
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    |||||||||||  ||| ||||||||  |||| || ||  ||||| ||||||||||||||||  |||||| | |||| ||||||||||||||    
T  3982259 acactctttaaaaatatcaaatttagtaattatttttagaaaaagtcaactattataatttataatgcattgaatagacaacttttaataa 3982349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 616
Target Start/End: Complemental strand, 26811317 - 26811259
Alignment:
Q  558 aattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||| |||||||||||||| |||||||| |||||||||| ||  ||||| |||||||||    
T  26811317 aattattcttttaaaaaattaactattagaatttccaatacatacaatatacaactttt 26811259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 531 - 621
Target Start/End: Complemental strand, 32562465 - 32562375
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    |||||||||||| ||   |||||||  |||| || ||||||||| |||||||||| ||||| ||||||| | ||||||||| |||| ||||    
T  32562465 acactctttaagaatctaaaatttagtaattattattttaaaaattcaactattacaattttcaatgcagtgaatacacaattttttataa 32562375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 608
Target Start/End: Complemental strand, 48022489 - 48022388
Alignment:
Q  507 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 606  Q
    |||||||||||| |||| ||||    ||||||||||||| ||| |||||  |||| || ||||||||| | |||||||  ||||| ||||||| ||||||    
T  48022489 gtcttgttaacgagtgcccctgtggtactctttaagcatcccatatttagtaattattgttttaaaaagttaactattgcaattttcaatgcattcaata 48022390  T
Q  607 ca 608  Q
    ||    
T  48022389 ca 48022388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 4e-31; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 507 - 616
Target Start/End: Original strand, 28207594 - 28207703
Alignment:
Q  507 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 606  Q
    |||||||||||| |||| || || ||||||||||||||| ||||||||||||||  |||||||||||| |||||||||| ||||||||||||| ||||||    
T  28207594 gtcttgttaacgagtgcccccgagacactctttaagcatcccaaatttaacaataattcttttaaaaagtcaactattacaatttccaatgcattcaata 28207693  T
Q  607 cacaactttt 616  Q
    ||||||||||    
T  28207694 cacaactttt 28207703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 533 - 621
Target Start/End: Original strand, 33013041 - 33013129
Alignment:
Q  533 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| |||||||||||||||||| ||||    
T  33013041 actctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaatttccaatgtactcaatacacaacttttcataa 33013129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 531 - 615
Target Start/End: Complemental strand, 4384247 - 4384163
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttt 615  Q
    ||||||||||||||  | |||||||  |||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  4384247 acactctttaagcaccctaaatttagtaattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaacttt 4384163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 519 - 619
Target Start/End: Complemental strand, 12684618 - 12684518
Alignment:
Q  519 ggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaa 618  Q
    |||||||| || ||||||||||||||| |||||||||| |||| |||||| ||| |||||||||||| |||||| |||||| ||| |||| |||||||||    
T  12684618 ggtgctcccgaaacactctttaagcattccaaatttaataattattctttcaaagaatcaactattacaatttctaatgcattcattacaaaacttttaa 12684519  T
Q  619 t 619  Q
    |    
T  12684518 t 12684518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 532 - 610
Target Start/End: Original strand, 13028124 - 13028202
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacaca 610  Q
    |||||||||||||| | ||||||| ||||| ||||||||||||||| | ||||| ||||| ||||||||||||||||||    
T  13028124 cactctttaagcattctaaatttatcaattattcttttaaaaaatctattattacaattttcaatgcactcaatacaca 13028202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 531 - 616
Target Start/End: Complemental strand, 167956 - 167871
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||||||| ||  ||||||||| |||| |||||||||||| |||||||||||||||||||||||| | | |||| |||||||    
T  167956 acactctttaagtatctcaaatttaaaaattattcttttaaaaagtcaactattataatttccaatgcatttattacataactttt 167871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 532 - 621
Target Start/End: Complemental strand, 33949661 - 33949572
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    |||||||||||||||  |||||||  || | || ||||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||    
T  33949661 cactctttaagcatattaaatttagtaagtattgttttaaaaattcaactattacaatttcaaatgcactcaatacacaacttttcataa 33949572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 532 - 621
Target Start/End: Complemental strand, 37813514 - 37813424
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaa-tcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    ||||||||||| || |||||||||  |||| ||||||||||||| ||||| |||| ||||||||||||| | |||||||||||||| ||||    
T  37813514 cactctttaaggatcccaaatttagtaattattcttttaaaaaagtcaaccattacaatttccaatgcattgaatacacaacttttcataa 37813424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 531 - 616
Target Start/End: Complemental strand, 27801338 - 27801253
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||||| ||| | |||||||  |||| |||||||||||| |||||||||| ||||| ||||||| ||| ||||||||||||    
T  27801338 acactctttaatcattctaaatttagtaattattcttttaaaaagtcaactattacaattttcaatgcattcattacacaactttt 27801253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 528 - 616
Target Start/End: Complemental strand, 1369974 - 1369886
Alignment:
Q  528 gatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||| | ||||||||| | ||||||| ||||| |||||||||||| |||||||| | ||||||||||||| |||||| | |||||||    
T  1369974 gatacattatttaagcatcctaaatttagcaattattcttttaaaaagtcaactatcacaatttccaatgcattcaatagataactttt 1369886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 532 - 613
Target Start/End: Complemental strand, 16723306 - 16723225
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaact 613  Q
    |||||||||||||| ||||||||   |||| |||||||||||||||||||| || ||||| |||| || |||| ||||||||    
T  16723306 cactctttaagcatcccaaattttgtaattattcttttaaaaaatcaactaatacaattttcaatacattcaacacacaact 16723225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 507 - 616
Target Start/End: Complemental strand, 42636502 - 42636393
Alignment:
Q  507 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 606  Q
    |||||||||| | ||||||| |   |||||||||||||| |||||||||  |||| || ||  ||||| |||||||||| ||||| ||||||| | ||||    
T  42636502 gtcttgttaaggagtgctcccggggcactctttaagcatcccaaatttagtaattattattcaaaaaagtcaactattacaatttacaatgcatttaata 42636403  T
Q  607 cacaactttt 616  Q
    ||||||||||    
T  42636402 cacaactttt 42636393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 539 - 597
Target Start/End: Original strand, 2250356 - 2250414
Alignment:
Q  539 taagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatg 597  Q
    ||||||| |||||||||| |||| |||||||||||| ||||| |||||||||| |||||    
T  2250356 taagcatcccaaatttaataattattcttttaaaaagtcaaccattataattttcaatg 2250414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 612
Target Start/End: Original strand, 9024482 - 9024563
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaac 612  Q
    |||||||||||| | ||||||||||  |||| |||||| |||||||||||||||| |||||   ||||| | ||||||||||    
T  9024482 acactctttaagaaaaccaaatttagtaattattctttcaaaaaatcaactattacaattttttatgcattaaatacacaac 9024563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 616
Target Start/End: Original strand, 24695741 - 24695826
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||||||| || |  ||||||  |||| || ||||||||| |||||||||| |||||| |||||| | ||||||||||||||    
T  24695741 acactctttaagaatccagaatttagtaattattattttaaaaagtcaactattacaatttctaatgcagtgaatacacaactttt 24695826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 616
Target Start/End: Original strand, 35901945 - 35902010
Alignment:
Q  551 atttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||| |||| || ||||||||| |||| ||||| ||||||||||||| |||||||| |||||||    
T  35901945 atttaataattatttttttaaaaagtcaattattacaatttccaatgcattcaatacagaactttt 35902010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 532 - 616
Target Start/End: Complemental strand, 2258202 - 2258118
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||||||||| |||||||||| |||| |||||||||||| | ||  |||| |||||  |||| | | ||||||||||||||    
T  2258202 cactctttaagcatcccaaatttaataattattcttttaaaaagttaatcattacaatttttaatgtatttaatacacaactttt 2258118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 616
Target Start/End: Original strand, 1135182 - 1135240
Alignment:
Q  558 aattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||| |||||||||||| |||||||||| ||||| ||||| | |||||| |||||||||    
T  1135182 aattattcttttaaaaagtcaactattacaattttcaatgtattcaatatacaactttt 1135240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 616
Target Start/End: Complemental strand, 3520893 - 3520835
Alignment:
Q  558 aattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||| ||||||||||||||||||||||| | |||  |||||| |||||||| |||||||    
T  3520893 aattattcttttaaaaaatcaactattacagtttttaatgcattcaatacataactttt 3520835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 599
Target Start/End: Complemental strand, 2888825 - 2888764
Alignment:
Q  538 ttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgca 599  Q
    |||||||| ||| |||||  |||| || ||||||||| | ||||||||||||||||||||||    
T  2888825 ttaagcatcccatatttagtaattatttttttaaaaagttaactattataatttccaatgca 2888764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 599
Target Start/End: Original strand, 3146037 - 3146098
Alignment:
Q  538 ttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgca 599  Q
    |||||||| ||| |||||  |||| |||||||||||| | |||||||| |||||||||||||    
T  3146037 ttaagcatcccatatttagtaattattcttttaaaaagttaactattacaatttccaatgca 3146098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 5588981 - 5589022
Alignment:
Q  558 aattgttcttttaaaaaatcaactattataatttccaatgca 599  Q
    |||| |||||||||||| |||||||||||||||| |||||||    
T  5588981 aattattcttttaaaaagtcaactattataattttcaatgca 5589022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 532 - 671
Target Start/End: Complemental strand, 39321093 - 39320954
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataannnnnnnact 631  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| ||||| | |||||||||||||||||||||       |||    
T  39321093 cactctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaattttcaatgtattcaatacacaacttttaataaaaaacttact 39320994  T
Q  632 aattaaaatgcgtaaagaatgctccaaagacactccttaa 671  Q
    ||||||| ||| |||||| ||   ||||||||||| ||||    
T  39320993 aattaaagtgcttaaagagtgtctcaaagacactcgttaa 39320954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 532 - 621
Target Start/End: Original strand, 35731282 - 35731371
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    |||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||||| |||||||||||||| ||||    
T  35731282 cactctttaagcataccaaatttaacaactattcttttaaaaagtcaactattacaatttccaatgcacttaatacacaactttttataa 35731371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 543 - 621
Target Start/End: Original strand, 3692883 - 3692961
Alignment:
Q  543 cataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||    
T  3692883 cataccaaatttagcaattattcttttaaaaaatcaactattacaatttccaatgcactcaatacacaatttttcataa 3692961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 532 - 616
Target Start/End: Original strand, 28770472 - 28770556
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||||||||| ||||| |||  |||| ||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||    
T  28770472 cactctttaagcatcccaaaattagtaattattcttttgaaaagtcaactattacaatttccaatgcattcaatacacaactttt 28770556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 507 - 594
Target Start/End: Original strand, 44537311 - 44537398
Alignment:
Q  507 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttcca 594  Q
    |||| ||||||| |||| |||||| |||||||||||||| ||| |||||  |||| |||||||||||| |||||||||||||||||||    
T  44537311 gtctcgttaacgagtgcccctgatgcactctttaagcatcccatatttagtaattattcttttaaaaagtcaactattataatttcca 44537398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 507 - 616
Target Start/End: Original strand, 27123244 - 27123353
Alignment:
Q  507 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 606  Q
    |||||||||||| |||| || |   |||||||||||||| |||||||||  |||  |||||||||||| |||||||||| ||||||||||||| | | ||    
T  27123244 gtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaatcattcttttaaaaagtcaactattacaatttccaatgcattaagta 27123343  T
Q  607 cacaactttt 616  Q
    ||||||||||    
T  27123344 cacaactttt 27123353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 508 - 620
Target Start/End: Original strand, 44592837 - 44592949
Alignment:
Q  508 tcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatac 607  Q
    ||||||||||| ||| | |||  |||||||||||  || | |||||||| |||| |||||||||||| | |||||||| ||||| ||||| | |||||||    
T  44592837 tcttgttaacgagtgtttctggaacactctttaaatattcaaaatttaataattattcttttaaaaagttaactattacaattttcaatgtattcaatac 44592936  T
Q  608 acaacttttaata 620  Q
    |||||||||||||    
T  44592937 acaacttttaata 44592949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 549 - 616
Target Start/End: Original strand, 7653588 - 7653655
Alignment:
Q  549 aaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||| ||| | |||||||||||| ||||||||||||||||||||| || ||| ||||||||||||    
T  7653588 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattacacaactttt 7653655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 531 - 621
Target Start/End: Original strand, 27337692 - 27337781
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    |||||||||||| ||  |||||||||||||| |||||| |||||||||||||||| | ||| |||| || | |||||||||||||| ||||    
T  27337692 acactctttaag-atctcaaatttaacaattattctttaaaaaaatcaactattacagtttacaatacattaaatacacaacttttcataa 27337781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 531 - 616
Target Start/End: Complemental strand, 7968671 - 7968586
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||| |||||||||   ||||||| ||||| |||||||||||||||||||||||  | ||  ||||||||| |||||||||||||    
T  7968671 acactttttaagcatcataaatttagcaattattcttttaaaaaatcaactattaccacttttaatgcactctatacacaactttt 7968586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 507 - 616
Target Start/End: Complemental strand, 28663273 - 28663166
Alignment:
Q  507 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 606  Q
    |||||||||||| |||| |||||  ||||||||||||||   || ||||  |||| |||||||||||| |||||||||| ||||| ||||||| ||||||    
T  28663273 gtcttgttaacgagtgc-cctgaggcactctttaagcatcataactttag-aattattcttttaaaaagtcaactattacaattttcaatgcattcaata 28663176  T
Q  607 cacaactttt 616  Q
    ||||| ||||    
T  28663175 cacaattttt 28663166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 507 - 616
Target Start/End: Original strand, 43234760 - 43234869
Alignment:
Q  507 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 606  Q
    |||||||||||| ||||||  |  ||| ||||||||||| | | |||||  |||| |||||||||||||| |||||||| |||||||| | || ||||||    
T  43234760 gtcttgttaacgagtgctctcgggacattctttaagcatcctatatttagtaattattcttttaaaaaataaactattacaatttccattacattcaata 43234859  T
Q  607 cacaactttt 616  Q
    || |||||||    
T  43234860 cataactttt 43234869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 535 - 611
Target Start/End: Complemental strand, 21727514 - 21727438
Alignment:
Q  535 tctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaa 611  Q
    |||||||||||  | ||||||  |||| |||||||||||| |||||||||| |||||||||| || |||||||||||    
T  21727514 tctttaagcatctccaatttagtaattattcttttaaaaagtcaactattacaatttccaatacattcaatacacaa 21727438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 531 - 591
Target Start/End: Complemental strand, 32699863 - 32699804
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataattt 591  Q
    ||||||||||| ||| |||||||||| |||| || |||||||||||||||||||| |||||    
T  32699863 acactctttaatcatcccaaatttaaaaattatt-ttttaaaaaatcaactattacaattt 32699804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 616
Target Start/End: Original strand, 42936028 - 42936085
Alignment:
Q  558 aattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||| ||||||||||||||||||||||| ||||| ||||||| | ||||||||| ||||    
T  42936028 aattattcttttaaaaaatcaactattacaattt-caatgcatttaatacacaattttt 42936085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 621
Target Start/End: Original strand, 18801051 - 18801124
Alignment:
Q  548 caaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    |||||||| |||||  |||||| |||| |||||||||| ||||| |||| || | |||||||||||||| ||||    
T  18801051 caaatttagcaattactcttttcaaaagtcaactattacaattttcaatacaatgaatacacaacttttcataa 18801124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 532 - 619
Target Start/End: Original strand, 1840978 - 1841065
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaat 619  Q
    |||||||||||||||  |||||||| |||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  1840978 cactctttaagcatattaaatttaataattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaacttttaat 1841065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 531 - 621
Target Start/End: Complemental strand, 19293565 - 19293475
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    ||||||||||||||| | ||||||||||||| || ||||||||| | |||||||| ||||||| ||||||||||||  |||||||| ||||    
T  19293565 acactctttaagcatcctaaatttaacaattattattttaaaaagttaactattacaatttccgatgcactcaataaccaacttttcataa 19293475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 532 - 608
Target Start/End: Original strand, 28874394 - 28874470
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaataca 608  Q
    ||||||||||||||   ||| |||  |||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  28874394 cactctttaagcatcataaaattagtaattattcttttgaaaaatcaactattataatttccaatgcattcaataca 28874470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 531 - 616
Target Start/End: Complemental strand, 2692542 - 2692457
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||||||| || | |||||||  |||| || ||||||||| |||||||||| ||||||||||| | | ||||||||||||||    
T  2692542 acactctttaagaatccaaaatttagtaattattattttaaaaagtcaactattacaatttccaatgaagtgaatacacaactttt 2692457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 508 - 616
Target Start/End: Original strand, 9762774 - 9762881
Alignment:
Q  508 tcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatac 607  Q
    ||||||||||| |||| || || ||||||||||| |||   |||||||  | || |||||||||||| |||| |||||||||||| ||| || ||| |||    
T  9762774 tcttgttaacgagtgcccccgaaacactctttaaacatcttaaatttagtattt-ttcttttaaaaagtcaattattataatttctaatacattcagtac 9762872  T
Q  608 acaactttt 616  Q
    |||||||||    
T  9762873 acaactttt 9762881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 532 - 596
Target Start/End: Complemental strand, 11720989 - 11720925
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaat 596  Q
    |||||||||| ||| | ||||||||||||| ||||||||| || |||||||||| ||||| ||||    
T  11720989 cactctttaaacatcctaaatttaacaattattcttttaagaagtcaactattacaattttcaat 11720925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 616
Target Start/End: Original strand, 32823693 - 32823756
Alignment:
Q  553 ttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||| |||| ||||||| |||| |||| ||||| ||||| ||||||| ||||||||||||||||    
T  32823693 ttaataattattcttttgaaaagtcaattattacaattttcaatgcattcaatacacaactttt 32823756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 581 - 619
Target Start/End: Original strand, 30801785 - 30801823
Alignment:
Q  581 tattataatttccaatgcactcaatacacaacttttaat 619  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  30801785 tattataattttcaatgcattcaatacacaacttttaat 30801823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 566 - 616
Target Start/End: Original strand, 31855083 - 31855133
Alignment:
Q  566 ttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||| |||||||||| ||||||||||||| |||||| |||| ||||    
T  31855083 ttttaaaaagtcaactattacaatttccaatgcattcaatatacaattttt 31855133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 616
Target Start/End: Complemental strand, 26669391 - 26669306
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||||||||   || |||||| |||| |||||||||||| |||||||||| ||||| || || | | |||||| |||||||    
T  26669391 acactctttaagcacttcatatttaataattattcttttaaaaagtcaactattacaattttcactgtatttaatacataactttt 26669306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 579
Target Start/End: Original strand, 30509286 - 30509358
Alignment:
Q  507 gtcttgttaacgggtg-ctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaa 579  Q
    |||||||||||| ||| |||| || ||||||||||||||||||||| | | ||||| |||||| ||||||||||    
T  30509286 gtcttgttaacgagtgtctccgga-acactctttaagcataccaaaataagcaattattctttaaaaaaatcaa 30509358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 495 - 616
Target Start/End: Complemental strand, 45900297 - 45900176
Alignment:
Q  495 attttaaaatgtgtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttcca 594  Q
    ||||||||||| |||||||||||| |||| || ||  |||||||||||||| | ||||||| ||||| |||||||| ||| |||||||| | ||||||||    
T  45900297 attttaaaatgggtcttgttaacgagtgcccccgaggcactctttaagcatcctaaatttagcaattattcttttataaagtcaactatcacaatttcca 45900198  T
Q  595 atgcactcaatacacaactttt 616  Q
    ||||| ||||||||||||||||    
T  45900197 atgcattcaatacacaactttt 45900176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 507 - 616
Target Start/End: Complemental strand, 7444522 - 7444412
Alignment:
Q  507 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaa-tcaactattataatttccaatgcactcaat 605  Q
    |||||||||||| ||||||| |||||||| ||||||||| |||||||||  |||| | ||||||||||| |||||||||| ||||| ||||||| |||||    
T  7444522 gtcttgttaacgagtgctcccgatacactttttaagcatcccaaatttagtaattatacttttaaaaaagtcaactattacaattttcaatgcattcaat 7444423  T
Q  606 acacaactttt 616  Q
    |||||||||||    
T  7444422 acacaactttt 7444412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 532 - 621
Target Start/End: Complemental strand, 37138273 - 37138184
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    ||||||||||| | | |||||||| ||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  37138273 cactctttaaggaaatcaaatttagcaactattcttttaaaaagtcaactattataatttccaatgcactcaatacacaacttttcataa 37138184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 531 - 616
Target Start/End: Original strand, 51834908 - 51834993
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||||||||| | ||||||| ||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  51834908 acactctttaagcatcctaaatttagcaattattcttttaaaaagtcaactattataatttccaatgcattaaatacacaactttt 51834993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 616
Target Start/End: Original strand, 31429280 - 31429356
Alignment:
Q  540 aagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||| ||| |||||| |||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  31429280 aagcattccatatttaaaaattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaactttt 31429356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 531 - 618
Target Start/End: Original strand, 51736348 - 51736435
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaa 618  Q
    |||||||||||  || ||||||||| ||||| |||||||||||| |||||||||||||||| |||| || | ||||||||||||||||    
T  51736348 acactctttaatgattccaaatttagcaattattcttttaaaaagtcaactattataattttcaatacattgaatacacaacttttaa 51736435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 531 - 616
Target Start/End: Complemental strand, 7852656 - 7852571
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||||||||| | |||||||  |||| |||||||||||||| |||||||| ||||| ||||||| | ||||||||||||||    
T  7852656 acactctttaagcatcctaaatttagtaattattcttttaaaaaattaactattacaattttcaatgcatttaatacacaactttt 7852571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 507 - 616
Target Start/End: Original strand, 8297841 - 8297950
Alignment:
Q  507 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 606  Q
    |||||||||||| |||| || |   |||||||||||||| |||||||||  |||| |||||||||||  |||||| ||| ||||||||||||| ||||||    
T  8297841 gtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaattattcttttaaaatgtcaactgttacaatttccaatgcattcaata 8297940  T
Q  607 cacaactttt 616  Q
    ||||| ||||    
T  8297941 cacaattttt 8297950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 507 - 616
Target Start/End: Original strand, 49400583 - 49400691
Alignment:
Q  507 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 606  Q
    |||||||||||| ||||||| ||  |||| ||||||||| | |||||||  |||| ||||||||||||||||||||||| ||||||||||| | | ||||    
T  49400583 gtcttgttaacgagtgctccagag-cactatttaagcatcctaaatttagtaattattcttttaaaaaatcaactattacaatttccaatgtatttaata 49400681  T
Q  607 cacaactttt 616  Q
    ||| ||||||    
T  49400682 cacgactttt 49400691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 539 - 616
Target Start/End: Complemental strand, 50341971 - 50341894
Alignment:
Q  539 taagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||| |||||||||  |||| |||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||    
T  50341971 taagcattccaaatttagtaattattcttttaaaaagtcaactattacaatttccaacgcattcaatacacaactttt 50341894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 533 - 616
Target Start/End: Complemental strand, 35777809 - 35777726
Alignment:
Q  533 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||| ||| |||||||||  |||| |||||||||||| | |||||||| |||||| |||||| ||||||||||||||||    
T  35777809 actctttaaccatcccaaatttagtaattattcttttaaaaagttaactattacaatttctaatgcattcaatacacaactttt 35777726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 532 - 608
Target Start/End: Original strand, 20394633 - 20394709
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaataca 608  Q
    |||||||||||||| |||||||||  |||| |||||||||||| | |||||||| |||||||||| || ||||||||    
T  20394633 cactctttaagcatcccaaatttagtaattattcttttaaaaagtgaactattacaatttccaatacattcaataca 20394709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 537 - 616
Target Start/End: Original strand, 50426989 - 50427068
Alignment:
Q  537 tttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||||  ||||||||  |||| ||||||| |||| |||||||||| ||||||||||||| |||| |||||||||||    
T  50426989 tttaagcatctcaaatttagtaattattcttttgaaaagtcaactattacaatttccaatgcaatcaacacacaactttt 50427068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 531 - 621
Target Start/End: Complemental strand, 25115375 - 25115285
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    |||||||||||| || | |||||||  |||| || ||||||||| | |||||||| ||||||||||||| | |||||||||||||| ||||    
T  25115375 acactctttaagaatccaaaatttagtaattattattttaaaaagttaactattacaatttccaatgcagtgaatacacaactttttataa 25115285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 531 - 616
Target Start/End: Complemental strand, 37383866 - 37383782
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||||||||| | |||||||  |||| |||||| |||||||||||  |||||| |||||||||| |||||| |||||||||    
T  37383866 acactctttaagcatccaaaatttagtaattattcttt-aaaaaatcaaccgttataacttccaatgcattcaatatacaactttt 37383782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 513 - 599
Target Start/End: Original strand, 48337532 - 48337618
Alignment:
Q  513 ttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgca 599  Q
    |||||| ||| |||||| | ||||||||| ||| |  |||||||||||| ||  ||||||||||||||||||| ||||| |||||||    
T  48337532 ttaacgagtgttcctgagatactctttaaacatccttaatttaacaattatttctttaaaaaatcaactattacaattttcaatgca 48337618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 566 - 616
Target Start/End: Complemental strand, 53014283 - 53014233
Alignment:
Q  566 ttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||||| |||||||| |||||||||| || ||||||||||||||||    
T  53014283 ttttaaaaaattaactattacaatttccaatacattcaatacacaactttt 53014233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 616
Target Start/End: Original strand, 42222985 - 42223034
Alignment:
Q  567 tttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||||| ||||    
T  42222985 tttaaaaaaccaactattataattttcaatgcattcaatacacaattttt 42223034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 532 - 616
Target Start/End: Complemental strand, 27953151 - 27953068
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||||||||  ||||||||  | || || ||||||||| | |||||||| ||||| ||||||| ||||||||||||||||    
T  27953151 cactctttaagcatctcaaatttagta-ttattattttaaaaagttaactattacaattttcaatgcattcaatacacaactttt 27953068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 616
Target Start/End: Complemental strand, 34391801 - 34391734
Alignment:
Q  549 aaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||  |||| |||||||| ||| |||  ||||| ||||||||||||| ||||||||||||||||    
T  34391801 aaatttagtaattattcttttataaagtcagttattacaatttccaatgcaatcaatacacaactttt 34391734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 621
Target Start/End: Complemental strand, 43969262 - 43969207
Alignment:
Q  566 ttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    |||| ||||||||||||||| ||||| |||||||||||||| |||| |||| ||||    
T  43969262 tttttaaaaatcaactattacaattttcaatgcactcaatatacaattttttataa 43969207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 616
Target Start/End: Complemental strand, 47995847 - 47995764
Alignment:
Q  533 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||||||| | |||||||  ||||  ||||||||||| | || ||||| ||||| ||||||| |||||||| |||||||    
T  47995847 actctttaagcattctaaatttagtaattactcttttaaaaagttaattattacaattttcaatgcattcaatacataactttt 47995764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 532 - 616
Target Start/End: Complemental strand, 49084512 - 49084427
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatg-cactcaatacacaactttt 616  Q
    ||||||||||  || | |||||||  |||| |||||||||||| |||||||||| ||||| |||||  | ||||||||||||||||    
T  49084512 cactctttaattatcctaaatttagtaattattcttttaaaaagtcaactattacaattttcaatgaaattcaatacacaactttt 49084427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 507 - 621
Target Start/End: Original strand, 15720037 - 15720151
Alignment:
Q  507 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 606  Q
    |||||||||||| ||| | | ||  ||||||| |||||||||||||||| ||||| |||||||||||| |||||||||| ||||||||||| ||| ||||    
T  15720037 gtcttgttaacgagtgtttccgaagcactcttcaagcataccaaatttatcaattattcttttaaaaagtcaactattacaatttccaatgaacttaata 15720136  T
Q  607 cacaacttttaataa 621  Q
    |||||||||| ||||    
T  15720137 cacaacttttcataa 15720151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 531 - 616
Target Start/End: Original strand, 7719198 - 7719283
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| ||||||||||  | ||||||||||||||||    
T  7719198 acactctttaagcataccatatttaaaaattattcttttaaaaaatcaactattacaatttccaatatattcaatacacaactttt 7719283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 532 - 616
Target Start/End: Complemental strand, 30501251 - 30501167
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||||||||| |||||||||  |||| |||||||||||| |||| ||||| |||||||||| || ||||||||||||||||    
T  30501251 cactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaactttt 30501167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 532 - 616
Target Start/End: Complemental strand, 30541594 - 30541510
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||||||||| |||||||||  |||| |||||||||||| |||| ||||| |||||||||| || ||||||||||||||||    
T  30541594 cactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaactttt 30541510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 535 - 616
Target Start/End: Complemental strand, 9276688 - 9276607
Alignment:
Q  535 tctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||| |||||| |||||||||  |||| || |||||||||||||||||||||||||| ||||||| |||||||| |||||||    
T  9276688 tcttcaagcatcccaaatttagtaattatttttttaaaaaatcaactattataattttcaatgcattcaatacataactttt 9276607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 532 - 616
Target Start/End: Complemental strand, 16667403 - 16667319
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||||||||  ||||||||| |||| |||||||||||| |||| ||||| |||||||||| || ||||||||||| ||||    
T  16667403 cactctttaagcatcacaaatttaataattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaattttt 16667319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 532 - 616
Target Start/End: Original strand, 30104799 - 30104883
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||||||||| |||||||||  || | || ||||||||| ||||| |||| ||||||||||||| ||||||||||||||||    
T  30104799 cactctttaagcatcccaaatttagtaactatttttttaaaaagtcaacaattacaatttccaatgcattcaatacacaactttt 30104883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 533 - 616
Target Start/End: Complemental strand, 2918707 - 2918624
Alignment:
Q  533 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||||||||  ||||||||| |||| || ||| ||||  |||||||||||||||||||||||| | ||||||||||||||    
T  2918707 actctttaagcatttcaaatttaataattattttttaaaaatgtcaactattataatttccaatgcatttaatacacaactttt 2918624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 510 - 671
Target Start/End: Original strand, 8221096 - 8221256
Alignment:
Q  510 ttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacac 609  Q
    ||||||||  ||||||| |  ||||||||||| ||| | ||||||| ||||| |||| ||||||| |||||||||| || || ||||||| |||||||||    
T  8221096 ttgttaacaagtgctcccggaacactctttaa-cattctaaatttagcaattattctcttaaaaagtcaactattacaactttcaatgcattcaatacac 8221194  T
Q  610 aacttttaataannnnnnnactaattaaaatgcgtaaagaatgctccaaagacactccttaa 671  Q
    || |||| || |       |||| ||||||||| |||||||||||||  |||||||| ||||    
T  8221195 aattttttattaaaaacttactatttaaaatgcttaaagaatgctccggagacactcattaa 8221256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 533 - 616
Target Start/End: Complemental strand, 18229712 - 18229629
Alignment:
Q  533 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||||||| |||||||||  |||| |||||||||||| | |||||||| |||||||||| || |||||| |||| ||||    
T  18229712 actctttaagcatcccaaatttagtaattattcttttaaaaagttaactattacaatttccaatacattcaataaacaattttt 18229629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 531 - 579
Target Start/End: Original strand, 141866 - 141914
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaa 579  Q
    ||||||||||||||||||||| | ||||||| |||||||||||| ||||    
T  141866 acactctttaagcataccaaaataaacaattattcttttaaaaagtcaa 141914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 532 - 611
Target Start/End: Original strand, 13480013 - 13480093
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaa-tcaactattataatttccaatgcactcaatacacaa 611  Q
    ||||||||||||||  ||||||||  |||| || ||| |||||| | |||||||||||||| ||||||| |||||||||||    
T  13480013 cactctttaagcatttcaaatttagtaattattttttaaaaaaaattaactattataattttcaatgcattcaatacacaa 13480093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 616
Target Start/End: Original strand, 3140826 - 3140893
Alignment:
Q  549 aaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||| |||| |||||||||||| |||||||||| ||||| |||| || | |||| |||||||||    
T  3140826 aaatttaataattattcttttaaaaagtcaactattacaattttcaattcatttaatatacaactttt 3140893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 616
Target Start/End: Complemental strand, 34899248 - 34899163
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||||||||| |||||| ||  |||| ||||||||||||  ||| ||||| |||||| |||||| | |||| | |||||||    
T  34899248 acactctttaagcatcccaaatatagtaattattcttttaaaaagacaattattacaatttctaatgcatttaatatataactttt 34899163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 616
Target Start/End: Complemental strand, 39558879 - 39558794
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||||||| || ||| |||||  |||| ||| |||||||| |||||| ||| ||||||||||||| |  |||||| ||||||    
T  39558879 acactctttaagtattccatatttagtaattattcatttaaaaattcaactgttacaatttccaatgcatttgatacacgactttt 39558794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 532 - 616
Target Start/End: Complemental strand, 1334995 - 1334911
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||||||||| |||||||||| |||| |||||| |||||||||||||||| ||||||||||||| |||||| |||| ||||    
T  1334995 cactctttaagcatcccaaatttaataattattctttaaaaaaatcaactattacaatttccaatgcattcaatatacaattttt 1334911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 531 - 656
Target Start/End: Original strand, 41933125 - 41933250
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataannnnnnnac 630  Q
    ||||| ||||| |||| |||||||| ||||| |||||||||||| |||||||||| ||||| ||||||||||| || ||||||||| ||||       ||    
T  41933125 acactgtttaaacatatcaaatttagcaattattcttttaaaaagtcaactattacaattttcaatgcactcagtaaacaactttttataaaaaatttac 41933224  T
Q  631 taattaaaatgcgtaaagaatgctcc 656  Q
    |||||||| ||| |||||| ||||||    
T  41933225 taattaaagtgcttaaagagtgctcc 41933250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 507 - 616
Target Start/End: Original strand, 4762319 - 4762428
Alignment:
Q  507 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 606  Q
    |||||||||||| ||||||| |   |||| ||||||||| |||||||||  |||| || ||||| ||| |||||||||||||||| ||||||| ||||||    
T  4762319 gtcttgttaacgagtgctcccggatcactgtttaagcatcccaaatttagtaattattattttataaagtcaactattataattttcaatgcattcaata 4762418  T
Q  607 cacaactttt 616  Q
    ||||| ||||    
T  4762419 cacaattttt 4762428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 537 - 616
Target Start/End: Complemental strand, 19890295 - 19890216
Alignment:
Q  537 tttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||| | |||||||  |||| |||||||||||| |||||||||| ||||||||||||| | ||||||||||||||    
T  19890295 tttaagcatcctaaatttagtaattattcttttaaaaagtcaactattacaatttccaatgcatttaatacacaactttt 19890216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 533 - 606
Target Start/End: Original strand, 40789703 - 40789777
Alignment:
Q  533 actctttaagcataccaaatttaacaattgttcttttaaaa-aatcaactattataatttccaatgcactcaata 606  Q
    ||||||| ||||||||||||||||||||| |||||||||||  ||||| ||||||||||| |||| |||||||||    
T  40789703 actctttgagcataccaaatttaacaattattcttttaaaattatcaattattataattttcaatacactcaata 40789777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 531 - 616
Target Start/End: Original strand, 15505538 - 15505623
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||||||| ||  ||||||||| |||| |||||| ||||| | |||||||||||||| |||| || ||||||||||||||||    
T  15505538 acactctttaagtatttcaaatttaataattattctttcaaaaagtaaactattataattttcaatacattcaatacacaactttt 15505623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 507 - 616
Target Start/End: Complemental strand, 38533480 - 38533373
Alignment:
Q  507 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 606  Q
    |||||||||||| |||| |||  ||||||||||||||||  ||||||||| |||| || ||||||| | ||||||||| ||||||| |||||| ||||||    
T  38533480 gtcttgttaacgagtgc-cctcgtacactctttaagcatctcaaatttaataatt-ttattttaaatagtcaactattgtaatttctaatgcattcaata 38533383  T
Q  607 cacaactttt 616  Q
    ||||| ||||    
T  38533382 cacaattttt 38533373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 532 - 616
Target Start/End: Complemental strand, 9449064 - 9448981
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||||||||   ||||||||  |||| |||||||||||| |||||||||||||||| |||| || ||||||||||||||||    
T  9449064 cactctttaagcaactcaaatttagtaattattcttttaaaaa-tcaactattataattttcaatacattcaatacacaactttt 9448981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 535 - 617
Target Start/End: Complemental strand, 31452454 - 31452372
Alignment:
Q  535 tctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttta 617  Q
    ||||||| ||| |||| ||||  |||| |||||||||||| ||||| |||| ||||| ||||||| |||||||||||||||||    
T  31452454 tctttaaacatcccaagtttagtaattattcttttaaaaagtcaacaattacaattttcaatgcattcaatacacaactttta 31452372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 532 - 616
Target Start/End: Original strand, 19514866 - 19514950
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||| |||| || | ||||||||||||| ||||||| |||| |||||||||||||||  ||||||| | |||| |||||||||    
T  19514866 cactctgtaaggatcctaaatttaacaattattctttttaaaagtcaactattataattatcaatgcaatgaatatacaactttt 19514950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 535 - 621
Target Start/End: Original strand, 14295626 - 14295712
Alignment:
Q  535 tctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    |||||||| || |||||||||  |||| |||||||||||  | |||||||| ||||| ||||||| | |||||||||||||| ||||    
T  14295626 tctttaagaatcccaaatttagtaattattcttttaaaaggttaactattacaattttcaatgcattgaatacacaactttttataa 14295712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 616
Target Start/End: Complemental strand, 43617575 - 43617514
Alignment:
Q  555 aacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||| |||||| |||||||||| ||||||||||||||| ||| | ||||||| ||||||    
T  43617575 aacaattattctttcaaaaaatcaattattataatttccaaagcattaaatacacgactttt 43617514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 542 - 621
Target Start/End: Complemental strand, 9173808 - 9173728
Alignment:
Q  542 gcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactc-aatacacaacttttaataa 621  Q
    |||||| ||||||| ||||| || |||||||||||||||||||| ||||| |||| || || ||||||||| |||| ||||    
T  9173808 gcatactaaatttagcaattatttttttaaaaaatcaactattacaattttcaatacaatcaaatacacaatttttcataa 9173728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 616
Target Start/End: Complemental strand, 31017418 - 31017335
Alignment:
Q  533 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||| ||| || |||||||||  |||| |||||| ||||| |||| |||| |||||| ||||||| | ||||||||||||||    
T  31017418 actcttcaagtatcccaaatttagtaattattctttaaaaaagtcaaatattttaattttcaatgcatttaatacacaactttt 31017335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 671
Target Start/End: Original strand, 37993076 - 37993212
Alignment:
Q  535 tctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataannnnnnnactaat 634  Q
    ||||||| ||| | |||||||| || | |||||| |||||||||||||||| ||||| ||||||| | |||||| || |||| || |       |||| |    
T  37993076 tctttaaacattctaaatttaataactattctttcaaaaaatcaactattacaattttcaatgcatttaatacataattttttattaaaaatttactatt 37993175  T
Q  635 taaaatgcgtaaagaatgctccaaagacactccttaa 671  Q
    |||||||  ||||||||||| || |||||||| ||||    
T  37993176 taaaatgtttaaagaatgcttcagagacactctttaa 37993212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 621
Target Start/End: Complemental strand, 11945009 - 11944895
Alignment:
Q  507 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 606  Q
    |||||||||||| ||| ||| || |||||||||||| || | || ||||  |||| || ||  ||||  |||||||||| ||||| ||||||| | ||||    
T  11945009 gtcttgttaacgagtgttccagagacactctttaaggatcctaattttagtaattatttttaaaaaatgtcaactattacaattttcaatgcattgaata 11944910  T
Q  607 cacaacttttaataa 621  Q
    |||||||||| ||||    
T  11944909 cacaacttttcataa 11944895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 532 - 621
Target Start/End: Original strand, 13538391 - 13538480
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    |||||||||||||||| |||||  | |||| |||||| ||||| |||| || |  ||||||||||||| | |||||| ||||||| ||||    
T  13538391 cactctttaagcatactaaattagaaaattattctttaaaaaattcaaataattcaatttccaatgcattgaatacataacttttcataa 13538480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 532 - 621
Target Start/End: Original strand, 20064906 - 20064995
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    ||||||||||| || | |||| ||  |||| |||||||||||| |||||||||| ||||| ||||| | | ||||||||| |||| ||||    
T  20064906 cactctttaaggatcctaaatatagtaattattcttttaaaaagtcaactattacaattttcaatgtattaaatacacaatttttcataa 20064995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 616
Target Start/End: Complemental strand, 38533980 - 38533896
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||| ||||||||||  ||||||||  |||| || ||||||| | ||||||||| ||||||| |||||| ||||||||||| ||||    
T  38533980 acaccctttaagcatctcaaatttagtaattatt-ttttaaatagtcaactattgtaatttctaatgcattcaatacacaattttt 38533896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 532 - 621
Target Start/End: Complemental strand, 39551966 - 39551878
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||||||||| || ||||| |||| ||||||||| ||||||||| ||||    
T  39551966 cactatttaagcataccaaatttagcaattattcttttaaaaaatcaacta-tacaattttcaatacactcaataaacaacttttcataa 39551878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 530 - 648
Target Start/End: Original strand, 47638888 - 47639006
Alignment:
Q  530 tacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataannnnnnna 629  Q
    |||||||||||||||||| ||||||||| ||| | |||||||||| | |||||||| |||||  |||||||||||||||||| |||| ||||       |    
T  47638888 tacactctttaagcatactaaatttaactattatgcttttaaaaagttaactattacaatttttaatgcactcaatacacaatttttcataaagaactta 47638987  T
Q  630 ctaattaaaatgcgtaaag 648  Q
    ||||||||||||| |||||    
T  47638988 ctaattaaaatgcttaaag 47639006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 531 - 599
Target Start/End: Complemental strand, 48180283 - 48180215
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgca 599  Q
    ||||||||||||||| || |||||||||||| |||||||||||| |||||||||| |||||||||||||    
T  48180283 acactctttaagcatccccaatttaacaattattcttttaaaaagtcaactattacaatttccaatgca 48180215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 547 - 616
Target Start/End: Complemental strand, 45988321 - 45988253
Alignment:
Q  547 ccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||| |||||| | || |||||||||||    
T  45988321 ccaaatttgacaattattcttttaaaaaatcaactattacaatttctaatgca-ttaacacacaactttt 45988253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 507 - 616
Target Start/End: Complemental strand, 42846143 - 42846032
Alignment:
Q  507 gtcttgttaacgggtgc-tcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaa-tgcactcaa 604  Q
    ||||||||| || |||| ||| ||| |||||||||||||| | |||||||  |||| |||||| ||||| |||||||||  ||||| ||| |||| ||||    
T  42846143 gtcttgttagcgagtgcctccggatgcactctttaagcatcctaaatttagtaattattctttgaaaaagtcaactatttcaattttcaattgcattcaa 42846044  T
Q  605 tacacaactttt 616  Q
    ||||||||||||    
T  42846043 tacacaactttt 42846032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 531 - 621
Target Start/End: Complemental strand, 52638270 - 52638180
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    |||||||||||| || | |||||||  |||| || |||||||||  ||||||||| ||||||||||||| | ||||||||| |||| ||||    
T  52638270 acactctttaagaatccaaaatttagtaattattattttaaaaagccaactattacaatttccaatgcagtgaatacacaattttttataa 52638180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 532 - 597
Target Start/End: Complemental strand, 49362465 - 49362400
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatg 597  Q
    |||| ||||| ||| |||||||||| |||| |||||||||||| | |||||||| |||||||||||    
T  49362465 cactttttaaacatcccaaatttaataattattcttttaaaaagttaactattacaatttccaatg 49362400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 497 - 553
Target Start/End: Complemental strand, 46547928 - 46547872
Alignment:
Q  497 tttaaaatgtgtcttgttaacgggtgctcctgatacactctttaagcataccaaatt 553  Q
    ||||| ||| |||||||||||||||||  |||| |||||||||||| ||||||||||    
T  46547928 tttaatatgagtcttgttaacgggtgcctctgagacactctttaagtataccaaatt 46547872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 621
Target Start/End: Original strand, 16663006 - 16663061
Alignment:
Q  566 ttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    ||||||||| |||||||||| |||| |||||||| | |||||||||||||| ||||    
T  16663006 ttttaaaaagtcaactattacaattaccaatgcagtgaatacacaactttttataa 16663061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 616
Target Start/End: Original strand, 51351277 - 51351356
Alignment:
Q  537 tttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||| | |||||||| |||| |||||||||||| |  | |||||||||||||||| || | ||||||||| ||||    
T  51351277 tttaagcattctaaatttaataattattcttttaaaaagtttagtattataatttccaatacatttaatacacaattttt 51351356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 532 - 616
Target Start/End: Complemental strand, 26900136 - 26900050
Alignment:
Q  532 cactctttaagcataccaaat-ttaacaattgttcttttaaaaaa-tcaactattataatttccaatgcactcaatacacaactttt 616  Q
    |||||||||||||| |||||| | || |||| ||||||||||||| |||||||||| ||||| ||||||| | | |||| |||||||    
T  26900136 cactctttaagcatcccaaatgtgaaaaattattcttttaaaaaagtcaactattacaattttcaatgcatttattacataactttt 26900050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 22730571 - 22730530
Alignment:
Q  558 aattgttcttttaaaaaatcaactattataatttccaatgca 599  Q
    |||| |||||||||||| |||||||||||||||| |||||||    
T  22730571 aattattcttttaaaaagtcaactattataattttcaatgca 22730530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 616
Target Start/End: Original strand, 52249320 - 52249405
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||| |||||| |||| |||||||| |||| |||||||||||| | |||||||| ||| || |||  | |||||| |||||||||    
T  52249320 acactttttaagtatacaaaatttaataattattcttttaaaaagttaactattacaatctctaatatattcaatatacaactttt 52249405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 532 - 608
Target Start/End: Original strand, 1060 - 1136
Alignment:
Q  532 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaataca 608  Q
    ||||||||||||||   ||| |||  |||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  1060 cactctttaagcatcataaaattagtaattattcttttgaaaaatcaactattataatttccaatgcattcaataca 1136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 621
Target Start/End: Complemental strand, 1026 - 954
Alignment:
Q  549 aaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    ||||||| |||||||||||||||||| |||||||||| ||||| ||||| | | |||||||| ||||| ||||    
T  1026 aaatttagcaattgttcttttaaaaagtcaactattacaattttcaatgtattgaatacacatcttttcataa 954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 563 - 621
Target Start/End: Complemental strand, 1784 - 1726
Alignment:
Q  563 ttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
    ||||||||||||  ||||||||| ||||||||||||| | ||| |||||||||| ||||    
T  1784 ttcttttaaaaagccaactattacaatttccaatgcattgaatgcacaacttttcataa 1726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 513 - 599
Target Start/End: Original strand, 25054 - 25140
Alignment:
Q  513 ttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgca 599  Q
    |||||| ||| |||||| | ||||||||| ||| |  |||||||||||| ||  ||||||||||||||||||| ||||| |||||||    
T  25054 ttaacgagtgttcctgagatactctttaaacatccttaatttaacaattatttctttaaaaaatcaactattacaattttcaatgca 25140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 608
Target Start/End: Complemental strand, 62635 - 62560
Alignment:
Q  533 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaataca 608  Q
    |||||||||||||  || |||||  |||| |||||||||||| ||||||||||  |||| ||||||| ||||||||    
T  62635 actctttaagcatctcatatttagtaattattcttttaaaaagtcaactattacgattttcaatgcattcaataca 62560  T

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Target: scaffold0268 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 563 - 621
Target Start/End: Complemental strand, 20328 - 20270
Alignment:
Q  563 ttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 621  Q
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T  20328 ttcttttaaaaagttaactattacaatttcaaatgcattaaatacacaacttttcataa 20270  T

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Target: scaffold0119 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 616
Target Start/End: Original strand, 1402 - 1487
Alignment:
Q  531 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 616  Q
    ||||||||||||||   || |||||| |||| |||||||||||| |||||||||| ||||| || || | | |||||| |||||||    
T  1402 acactctttaagcacttcatatttaataattattcttttaaaaagtcaactattacaattttcactgtatttaatacataactttt 1487  T

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