View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_31 (Length: 370)
Name: NF7347_low_31
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 44002380 - 44002723
Alignment:
| Q |
16 |
atgataacgccaagatcagcctcttctccaattgctggacggcgcagactgatcacgtatatctgaattgcacaccacaagcagtataaagaagctatgg |
115 |
Q |
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| T |
44002380 |
atgataacgccaagatcagcctcttctccaattgctggacggcgcagactgatcacgtatatctgaattgcacaccacaagcagtataaagaagctatgg |
44002479 |
T |
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| Q |
116 |
ataccataagtagcattgactgatatgattttttctttatcgagtctgagcaacttgctctgcaaggcaatgaaaaagaaagaagaatatgttaaaacct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44002480 |
ataccataagtagcattgactgatatgattttttctttatcgagtctgaggaactcgctctgcaaggcaatgaaaaagaaagaagaatatgttaaaacct |
44002579 |
T |
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| Q |
216 |
ctatagtataacttgatattgaacatggaaagttgcaataacaaaacgagaatttcttttaggcccccaactactcgcatgccctacattcggatcttaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44002580 |
ctatagtataacttgatattgaacatggaaagttgcaataacaaaacgagaatttcttttaggcccccaactattcgcatgccctacattcggatcttaa |
44002679 |
T |
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| Q |
316 |
aatcagaaagaaaataaaa--gggggtttcttaatgtgtttttt |
357 |
Q |
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|||||||||||||| |||| ||||||||||| ||||||||||| |
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| T |
44002680 |
aatcagaaagaaaaaaaaaaggggggtttcttgatgtgtttttt |
44002723 |
T |
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