View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_35 (Length: 343)
Name: NF7347_low_35
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 40780310 - 40780007
Alignment:
| Q |
16 |
cacacacgactcgggaaataatgta--ctcatggatgacgtaagttattccaaattaaaggagacactatgtaagtgtagatactcattcaataaaaaat |
113 |
Q |
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| T |
40780310 |
cacacacgactcgggaaataatgtaaactcatggatgacgtaagttattccaaattaaaggagacactaggtcagtgtagatactcattcaataaaaaat |
40780211 |
T |
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| Q |
114 |
gattcaagtgatgcaattagactatggtaaatagcaagaagctctgcattctgcatggctattatagttattattagacaaatgtacccaaaagctttac |
213 |
Q |
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| T |
40780210 |
gattcaagtgatgcaattagactatggtaaatagcaagaagctctgcattctgcatggctattatagttattattagacaaatgtacccaaaagctttac |
40780111 |
T |
|
| Q |
214 |
ctaggttcttaaattgctgccaactatacactgagatttgagaataattttgattgttttaagtttttaaccagctataaagtaacatgccaaaatctct |
313 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40780110 |
ctaggttcttaaattgcttccaac--tacactgagatttgagaataattttgattgttttaagtttttaaccaaatataaagtaacatgccaaaatctct |
40780013 |
T |
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| Q |
314 |
ccccac |
319 |
Q |
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|||||| |
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| T |
40780012 |
ccccac |
40780007 |
T |
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