View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_36 (Length: 342)
Name: NF7347_low_36
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 34548013 - 34548319
Alignment:
| Q |
20 |
gatttctaattcctctccaactttgtaatagaaaaacgtgagactttttggaacaatatcattttcatttcgaacaaacaatgcactcaaatctttgtgg |
119 |
Q |
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| T |
34548013 |
gatttctaattcctctccaactttgtaatagaaaaacgtgagactttttggaacaatatcattttcatttcgaacaaacaatgcactcaaatctttgtgg |
34548112 |
T |
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| Q |
120 |
tcagagaaaatcttttgaaagtaagaatttccaacacgaggtgcaccaaatgcaaatgttgtaactggacatgctttttgaggttgcccttttggcatgt |
219 |
Q |
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| T |
34548113 |
tcagagaaaatcttttgaaagtaagaatttccaacacgaggtgcaccaaatgcaaatgttgtaactggacatgctttttgaggttgctcttttggcatgt |
34548212 |
T |
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| Q |
220 |
tgaatttattagcaactatatccactgaacttatagttgcaagtgcaccacccaaactgtgtccagttacagttatgctaatttcttcattcttgtatag |
319 |
Q |
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| T |
34548213 |
tgaatttattagcaactatatccactgaacttatagttgcaagtgcaccacccaaactgtgtccagttacagttatgctaatttcttcattcttgtatag |
34548312 |
T |
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| Q |
320 |
ctccaca |
326 |
Q |
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| T |
34548313 |
ctccaca |
34548319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 87 - 326
Target Start/End: Original strand, 34556573 - 34556812
Alignment:
| Q |
87 |
tttcgaacaaacaatgcactcaaatctttgtggtcagagaaaatcttttgaaagtaagaatttccaacacgaggtgcaccaaatgcaaatgttgtaactg |
186 |
Q |
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| T |
34556573 |
tttcgaataaacaatgctctcaaatcattgttgtcggagaaaatcttttcaaagttagaatttccaacacgaggtgaaccaaatgcaaataatgtgactg |
34556672 |
T |
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| Q |
187 |
gacatgctttttgaggttgcccttttggcatgttgaatttattagcaactatatccactgaacttatagttgcaagtgcaccacccaaactgtgtccagt |
286 |
Q |
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| T |
34556673 |
gacatgttttttgaggttgcccttttggtatgttgaatttattagcaactatatccatagagcttatagttgcaagtgcaccacccaagctgtgtcccgt |
34556772 |
T |
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| Q |
287 |
tacagttatgctaatttcttcattcttgtatagctccaca |
326 |
Q |
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| T |
34556773 |
tacagttatgctaatttcttcattcttatatagctccaca |
34556812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 4674847 - 4674924
Alignment:
| Q |
240 |
tccactgaacttatagttgcaagtgcaccacccaaactgtgtccagttacagttatgctaatttcttcattcttgtat |
317 |
Q |
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| T |
4674847 |
tccactgcatttagagttgcaattgcagcacctaaactgtgacctgttatagttatgcttatttcttcattcttgtat |
4674924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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