View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7347_low_4 (Length: 756)
Name: NF7347_low_4
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Original strand, 43802746 - 43803180
Alignment:
| Q |
16 |
gacatcactgaaaagtttggtctctcaaccccaagagccaaacacttgcttgcagtgccaacatatcgccttcatggggaagcaacatgaccaatcaagt |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43802746 |
gacatgactgaaaagtttggtctctcaaccccaagagccaaacacttgcttgcagtgccaacatatcgccttcatggggaagcaacgtgaccaatcaagt |
43802845 |
T |
|
| Q |
116 |
ttattttagttcaaggtctgaactaatagaaagttgtagtactacttaggtgcttgtctcatgtctgtattaatattagcatatgctattactgtataca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43802846 |
ttattttagttcaaggtctgaactaatagaaagttgtagtactacttaggtgcttgtctcatgtctgtattaatattagcatatgctattacagtataca |
43802945 |
T |
|
| Q |
216 |
actgtcaaatagattacttgcgtagcatgtaactacttggcagttatgttagttagttggagtttgtcatgtgttagctattccatgtaggtgactacaa |
315 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43802946 |
actgtcaaatagattacttgcgtagtatgtaactacttggcagttatgttagttagttggagtttgttatgtgttagctattccatgtaggtgactacaa |
43803045 |
T |
|
| Q |
316 |
taagcaagcatagatcacaattcatgtatatatacatcttgtactttccataattgagtaatgagaatcactttttctatttgtttcttttgttcataat |
415 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43803046 |
taagcaaacatagatcacaattcatgtatatatacatcttgtactttccataattgagtaatgagaatcactttttctatttgtttcttttgttcataat |
43803145 |
T |
|
| Q |
416 |
atatgctaacaataatggattagaaattcaaaagt |
450 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43803146 |
atatgctaacaataatggattagaaatccaaaagt |
43803180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 591 - 739
Target Start/End: Original strand, 43803357 - 43803505
Alignment:
| Q |
591 |
gccatggaaatagtgaatacttacagcactaaattgagtagagatcactctacaagcatagaaaaaatttagacatgnnnnnnncttttagaacgttttt |
690 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43803357 |
gccatggaaatagtgaatacttacagcactaaattgagtagagatcactctacaagcatagaaaaaatttagacatgaaaaaaacttttagaacgttttt |
43803456 |
T |
|
| Q |
691 |
ctttttgctaatgactttcgtcatatattttcatacatagagttaaaaa |
739 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43803457 |
ctttttgctaatgactttcgtcatatattttcatacgtagagttaaaaa |
43803505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 43813315 - 43813460
Alignment:
| Q |
16 |
gacatcactgaaaagtttggtctctcaaccccaagagccaaacacttgcttgcagtgccaacatatcgccttcatggggaagcaacatgaccaatcaagt |
115 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43813315 |
gacatgactgaaaagtttggtctctcaatcccaagagccaaacacttgcttgcagtgccaacatatcgccttcatggggaagcaacatgaccaattaagt |
43813414 |
T |
|
| Q |
116 |
ttattttagttcaaggtctgaactaatagaaagttgtagtactact |
161 |
Q |
| |
|
|| |||||||||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
43813415 |
ttgctttagttcaaggattgaactaatgtaaagttgtactactact |
43813460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 437 - 502
Target Start/End: Original strand, 43803203 - 43803268
Alignment:
| Q |
437 |
agaaattcaaaagtgttgtacagtatctataaaaaacaataatagggttatttgaaccaccttaga |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43803203 |
agaaattcaaaagtgttgtacagtatctataaaaaacaataatagggttatttgaaccaccttaga |
43803268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 38617252 - 38617361
Alignment:
| Q |
202 |
tattactgtatacaactgtcaaatagattacttgcgtagcatgtaactacttggcagttatgttagttagttggagtttgtcatgtgttagctattccat |
301 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||| |||||| |||| ||||||||||| ||||||| |||| || ||||||||| |||||||| |
|
|
| T |
38617252 |
tattacagtatacaactgtcaaatagattacctgcgtagcaagtaactgcttgacagttatgttaattagttgaagttggttatgtgttaggtattccat |
38617351 |
T |
|
| Q |
302 |
gtaggtgact |
311 |
Q |
| |
|
|||||||||| |
|
|
| T |
38617352 |
gtaggtgact |
38617361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University