View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_40 (Length: 310)
Name: NF7347_low_40
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 23 - 297
Target Start/End: Complemental strand, 24258781 - 24258507
Alignment:
| Q |
23 |
atgtctaatgacaaaacacataattgataaatagaacaaaaaatgtaccatcaaatagttcacaagatcgataaacaattagtcctacgtttatcaatca |
122 |
Q |
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| T |
24258781 |
atgtctaatgacaaaacacataatcgataaatagaacaaaaaatgtaccatcaaatagttcacaagatcgataaacaattagtcctacgtttatcaatca |
24258682 |
T |
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| Q |
123 |
ttcttttccatccccccaaattttgcagtgcttgttgggcacaattccaaacacaacaatgtagtctcgtttgttgacgcagtcatctatcaatgccact |
222 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24258681 |
ttcttttccatccccccaaattttgcagttcttgttgggcacaattccaaacacaacaatgtagtctcgtttgttgacgcagtcatctatcaatgccact |
24258582 |
T |
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| Q |
223 |
taaaaaacaacatgaaccaaaccgatgaaagattgaaagaagtaaaaactaaaacaatcgaattcaaactccaca |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24258581 |
taaaaaacaacatgaaccaaaccgatgaaagattgaaagaagtaaaaactaaaacaatcgaattcaaactccaca |
24258507 |
T |
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