View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_41 (Length: 307)
Name: NF7347_low_41
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 8817355 - 8817628
Alignment:
| Q |
16 |
gacatcagaaaaagccataatcaaatacacaagcatgaaacaatgtgctccgatgcaagaattttcacttagtggcacactagtggcttcaagatcataa |
115 |
Q |
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| T |
8817355 |
gacataagaaaaagccataatcaaatacacaagcatgaaacaatgtgctccgatgcaagaattttcacttcgtggcacactagtggcttcaagatcataa |
8817454 |
T |
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| Q |
116 |
agataaccagcaatgagaccagaaaagaggaatgaaccaacagaaaggttgagaatgaggatgttttataatgaaccatgttatttgagtcc-aatagtt |
214 |
Q |
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| T |
8817455 |
agataaccagcaatgagatcagaaaagaggaatgaaccaatagaaaggttgagaatgaggatgttttataatgaaccatgttatttgagtccaaatagtt |
8817554 |
T |
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| Q |
215 |
ctgaacctgctgatggtgtaaatagtaagaggaactccatagcatataccaactaacatcaaaccaatgtatag |
288 |
Q |
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| T |
8817555 |
ctgaacctgctgattgtgtaaatagtaagacgaactccatagcatataccaactaacatcaaaccaatgtatag |
8817628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 26 - 291
Target Start/End: Original strand, 8818969 - 8819234
Alignment:
| Q |
26 |
aaagccataatcaaatacacaagcatgaaacaatgtgctccgatgcaagaattttcacttagtggcacactagtggcttcaagatcataaagataaccag |
125 |
Q |
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| T |
8818969 |
aaagccataatcacatacacaagcatgaaacaatgtgctccactgcaagtgtttccgcctcctggcacactggtggcttcaatatcataaaggtagccgg |
8819068 |
T |
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| Q |
126 |
caatgagaccagaaaagaggaatgaaccaacagaaaggttgagaatgaggatgttttataatgaaccatgttatttgagtcc-aatagttctgaacctgc |
224 |
Q |
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| T |
8819069 |
caatgagaccagaaaagatgaatgaaccgataggaaggttgagaatgaggatgttgtataataaaccatagtatttgagaccaaatagttctgaagctgc |
8819168 |
T |
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| Q |
225 |
tgatggtgtaaatagtaagaggaactccatagcatataccaactaacatcaaaccaatgtatagtga |
291 |
Q |
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| T |
8819169 |
tgctggtgt-tatagtaagacgaactccgtaacatattcctactaagattgaaccaatgtatagtga |
8819234 |
T |
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