View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7347_low_43 (Length: 298)
Name: NF7347_low_43
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 23 - 268
Target Start/End: Original strand, 33767459 - 33767704
Alignment:
| Q |
23 |
tgctatacggtgcaaagtaatttgtcgtgaaaaatcatgaatgctgatgtgctaaacggtggtaggatataatttcccgaattggtggaataaaagcggt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33767459 |
tgctatacggtgcaaagtaatttgtcgtgaaaaatcatgaatgctgatgtgctaaacggtggtaggatataatttcccgaattggtggaataaaagcggt |
33767558 |
T |
|
| Q |
123 |
ggttgtggtataagcttggtcagcatagttaaaacatacatcgtgaacgtgtcgtggagaaaatattcgctatcttaagcattaccctaaaaacattagc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33767559 |
ggttgtggtataagcttggtcagcatagttaaaacatacatcgtgaacgtgtcgtggagaaaatattcgctatcttaagcattaccctaaaaacattagc |
33767658 |
T |
|
| Q |
223 |
acattgcgtattttgctgactcacttaaagtctatgtgcgtgtgtg |
268 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33767659 |
acattgtgtattttgctgactcacttaaaggctatgtgcgtgtgtg |
33767704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 16912707 - 16912661
Alignment:
| Q |
32 |
gtgcaaagtaatttgtcgtgaaaaatcatgaatgctgatgtgctaaa |
78 |
Q |
| |
|
|||||||| ||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
16912707 |
gtgcaaaggaatttatagtgaaaaatcacgaatgctgatgtgctaaa |
16912661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 1711000 - 1711102
Alignment:
| Q |
42 |
atttgtcgtgaaaaatcatgaatgctgatgtgctaaacggtggtaggatataatttcccgaattggtggaataaaagcggtggttgtggtataagcttgg |
141 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||| | | |||| ||||| |||| || ||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
1711000 |
atttatcgtgaaaaatcacgaatgctgatgtgctaaatagagataggttataaattccgaaactggtggaataaaagcggtggttgtgctataagtttgg |
1711099 |
T |
|
| Q |
142 |
tca |
144 |
Q |
| |
|
||| |
|
|
| T |
1711100 |
tca |
1711102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 13346649 - 13346721
Alignment:
| Q |
47 |
tcgtgaaaaatcatgaatgctgatgtgctaaacggtggtaggatataatttcccgaattggtggaataaaagc |
119 |
Q |
| |
|
||||||||||||| | | ||||||||| ||||||||||| || || || |||| || |||||||||||||||| |
|
|
| T |
13346649 |
tcgtgaaaaatcacggaagctgatgtggtaaacggtggttggttacaaattccggatttggtggaataaaagc |
13346721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University