View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_44 (Length: 292)
Name: NF7347_low_44
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_44 |
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| [»] chr1 (11 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 292
Target Start/End: Original strand, 10978931 - 10979213
Alignment:
| Q |
10 |
aatatgatatgcaattcagccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgatattatc |
109 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10978931 |
aatatgatatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattata |
10979030 |
T |
|
| Q |
110 |
atcatctgcaacatcctctactggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaact |
209 |
Q |
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||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10979031 |
atcatctccaacatcctctactggtggatcttgtaaacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacact |
10979130 |
T |
|
| Q |
210 |
ttatccattgaaggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcatttc |
292 |
Q |
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||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10979131 |
ttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttc |
10979213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 292
Target Start/End: Original strand, 10903031 - 10903318
Alignment:
| Q |
5 |
cgaataatatgatatgcaattcagccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgata |
104 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||| ||||||||||| || |
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| T |
10903031 |
cgaacaatatgatatgtaattcagccaagaaccaaaaagagattaggttggtcccttgggatcactaattgatgtaccataggaagtccatgagttgcta |
10903130 |
T |
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| Q |
105 |
ttatcatcatctgcaacatcctctactggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcca |
204 |
Q |
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| T |
10903131 |
ttattatcatctccaacgtctgctgttggtggatcttgtggacaaaagtaaggcttattaggaatttgtaagtccccatcttctttttcaagcatctcca |
10903230 |
T |
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| Q |
205 |
aaactttatccattgaaggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcatttc |
292 |
Q |
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| T |
10903231 |
aaactttatccattgaaggacgatcctcgggttttgtttgtatacaccacaaagccacggtcatcattttctttgccaatttcatttc |
10903318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 24 - 292
Target Start/End: Original strand, 10932590 - 10932859
Alignment:
| Q |
24 |
ttcagccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgatattatcatcatctgcaacat |
123 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| || || || |||| |||||| |
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| T |
10932590 |
ttcaaccaagaaccaaaaagagattaggttggtcccttgggatcactaactgatgtaccataggaagtccatgagttgctactactattatctccaacat |
10932689 |
T |
|
| Q |
124 |
cctctactggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcc-aaaactttatccattgaag |
222 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
10932690 |
cctctactggtggatcttgtggacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcctaaaactttttccattgaag |
10932789 |
T |
|
| Q |
223 |
gacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcatttc |
292 |
Q |
| |
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||||||| | ||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10932790 |
gacgatcctcgggatttgtttgtatacaccacaaagccacgatcatcattttctttgccaatttcatttc |
10932859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 22 - 292
Target Start/End: Original strand, 10914208 - 10914478
Alignment:
| Q |
22 |
aattcagccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgatattatcatcatctgcaac |
121 |
Q |
| |
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|||||| |||||||||| |||||||||||||||||||||||| || |||||||||||||||||| ||| ||||||| ||| || || ||||||| |||| |
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| T |
10914208 |
aattcaaccaagaaccagaaagagatcaggttggtcccttgggataactaactgatgtaccataagaagtccatgaattgctacaattatcatctccaac |
10914307 |
T |
|
| Q |
122 |
atcctctactggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaa |
221 |
Q |
| |
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||| || ||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10914308 |
atctgctgttggtggatcttgtggacaaaaataaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttttccattgaa |
10914407 |
T |
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| Q |
222 |
ggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcatttc |
292 |
Q |
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|||||||| | |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10914408 |
ggacgatcctctggttttgtttgtatacaccacaaagctacaatcatcattttctttgccaatttcatttc |
10914478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 52 - 292
Target Start/End: Complemental strand, 11029070 - 11028830
Alignment:
| Q |
52 |
ttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgatattatcatcatctgcaacatcctctactggtggatcttgtagacagaa |
151 |
Q |
| |
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|||||| ||||| ||| ||||||||||||||||| ||| ||||||||||| || ||| ||| || |||||||||||||| |||||||||| |||| || |
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| T |
11029070 |
ttggtcacttgggatcgctaactgatgtaccataggaagtccatgagttgctactattatcgactccaacatcctctactagtggatcttgcggacaaaa |
11028971 |
T |
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| Q |
152 |
gtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacac |
251 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |||||| |
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| T |
11028970 |
gtaaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcctctggttttgtttgtatacac |
11028871 |
T |
|
| Q |
252 |
cacaaagccacaatcatcattttctttgccaatttcatttc |
292 |
Q |
| |
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||||||||| || |||||||||||||||||||||||||||| |
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| T |
11028870 |
cacaaagccgcagtcatcattttctttgccaatttcatttc |
11028830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 11010507 - 11010767
Alignment:
| Q |
10 |
aatatgatatgcaattcagccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgatattatc |
109 |
Q |
| |
|
||||||||||| |||||| | |||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||| || | | |
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| T |
11010507 |
aatatgatatgtaattcaaacgagaaccaaaa-gagatcagtttggtcccttggaaccactaactgatgtaccatcggaagtccatgagttgctactgta |
11010605 |
T |
|
| Q |
110 |
atcatctgcaacatcctctactggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaact |
209 |
Q |
| |
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| |||||| ||| ||||| ||||||| |||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
11010606 |
a---------acatccgctattggtgaatcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaact |
11010696 |
T |
|
| Q |
210 |
ttatccattgaaggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgc |
280 |
Q |
| |
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|||||||||||||||||||| | ||||||||||| |||||||| || ||||||||||||||||||||||| |
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| T |
11010697 |
ttatccattgaaggacgatcatcaggttttgtctgtatacaccataacgccacaatcatcattttctttgc |
11010767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 110 - 292
Target Start/End: Complemental strand, 10994109 - 10993927
Alignment:
| Q |
110 |
atcatctgcaacatcctctactggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaact |
209 |
Q |
| |
|
||||||| |||||| ||| ||||| ||||||| || | | ||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||| |
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| T |
10994109 |
atcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcact |
10994010 |
T |
|
| Q |
210 |
ttatccattgaaggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcatttc |
292 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
10994009 |
ttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttc |
10993927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 130 - 292
Target Start/End: Complemental strand, 11005405 - 11005243
Alignment:
| Q |
130 |
ctggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatc |
229 |
Q |
| |
|
||||| |||||||| || | | ||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
11005405 |
ctggtagatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatc |
11005306 |
T |
|
| Q |
230 |
gttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcatttc |
292 |
Q |
| |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11005305 |
acctggttttgtctgtatacaccataaagccacaatcatcattttctttgccaatttcatttc |
11005243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 155 - 292
Target Start/End: Original strand, 11032933 - 11033070
Alignment:
| Q |
155 |
aggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacaccac |
254 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||| | ||||||||||||| |
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| T |
11032933 |
aggcttattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcctgaatacaccac |
11033032 |
T |
|
| Q |
255 |
aaagccacaatcatcattttctttgccaatttcatttc |
292 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
11033033 |
aaagccactatcatcattttctttgccaatttcatttc |
11033070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 130 - 292
Target Start/End: Original strand, 10901380 - 10901542
Alignment:
| Q |
130 |
ctggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatc |
229 |
Q |
| |
|
||||| |||||||| || | | ||||||||| ||||| |||||||| ||||||||||||| | |||||||||| | ||||||||||||||||||||||| |
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| T |
10901380 |
ctggtagatcttgtggataaaggtaaggcttcttaggcatttgcaaatccccatcttcttatgcaagcatctcaatcactttatccattgaaggacgatc |
10901479 |
T |
|
| Q |
230 |
gttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcatttc |
292 |
Q |
| |
|
| |||||||||||| ||||||| || |||||||||||| |||||||||||||||||||||| |
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| T |
10901480 |
actaggttttgtctgagtacaccataatgccacaatcatcgttttctttgccaatttcatttc |
10901542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 155 - 289
Target Start/End: Original strand, 11007480 - 11007614
Alignment:
| Q |
155 |
aggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacaccac |
254 |
Q |
| |
|
||||| |||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||| | |||||||||||| |
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| T |
11007480 |
aggctgattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcttgaatacaccac |
11007579 |
T |
|
| Q |
255 |
aaagccacaatcatcattttctttgccaatttcat |
289 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
11007580 |
aaagccactatcatcattttctttgccaatttcat |
11007614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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