View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7347_low_47 (Length: 274)

Name: NF7347_low_47
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7347_low_47
NF7347_low_47
[»] chr3 (47 HSPs)
chr3 (13-260)||(32264412-32264658)
chr3 (28-182)||(18099554-18099707)
chr3 (13-182)||(10956396-10956563)
chr3 (13-182)||(26720268-26720436)
chr3 (13-182)||(22114674-22114842)
chr3 (64-182)||(32218836-32218953)
chr3 (64-182)||(48362069-48362186)
chr3 (13-181)||(5191374-5191541)
chr3 (13-182)||(5522984-5523152)
chr3 (34-183)||(50493675-50493823)
chr3 (13-182)||(1321161-1321329)
chr3 (34-182)||(38210067-38210214)
chr3 (82-182)||(11162891-11162990)
chr3 (40-182)||(53896613-53896754)
chr3 (90-182)||(18097331-18097422)
chr3 (13-182)||(24176999-24177167)
chr3 (82-182)||(11170145-11170244)
chr3 (41-182)||(6063866-6064006)
chr3 (98-182)||(7606880-7606963)
chr3 (64-182)||(35777163-35777280)
chr3 (32-149)||(5899492-5899608)
chr3 (180-229)||(10019996-10020045)
chr3 (182-251)||(34850758-34850827)
chr3 (32-182)||(5885983-5886133)
chr3 (13-77)||(45882763-45882827)
chr3 (179-250)||(50987-51057)
chr3 (64-183)||(38889756-38889875)
chr3 (13-77)||(10958692-10958756)
chr3 (203-250)||(37836888-37836935)
chr3 (134-184)||(45882657-45882707)
chr3 (52-149)||(10192401-10192496)
chr3 (32-113)||(25388665-25388746)
chr3 (13-77)||(3859352-3859416)
chr3 (180-248)||(20779424-20779492)
chr3 (13-55)||(6719502-6719544)
chr3 (13-55)||(10084762-10084804)
chr3 (13-55)||(10191682-10191724)
chr3 (136-182)||(18162405-18162451)
chr3 (13-55)||(18162510-18162552)
chr3 (13-55)||(24979553-24979595)
chr3 (13-55)||(38889863-38889905)
chr3 (181-214)||(55440-55473)
chr3 (134-182)||(25388618-25388666)
chr3 (180-248)||(52489-52557)
chr3 (61-149)||(10085490-10085576)
chr3 (64-100)||(24979529-24979565)
chr3 (188-248)||(32262823-32262883)
[»] chr5 (40 HSPs)
chr5 (13-182)||(20507833-20508001)
chr5 (45-182)||(20504316-20504452)
chr5 (13-182)||(21947770-21947935)
chr5 (13-182)||(38881845-38882013)
chr5 (65-182)||(12556325-12556441)
chr5 (64-182)||(2818729-2818847)
chr5 (34-182)||(34477485-34477632)
chr5 (64-182)||(659713-659829)
chr5 (13-182)||(31544798-31544966)
chr5 (64-182)||(34479855-34479972)
chr5 (13-178)||(4236374-4236538)
chr5 (13-182)||(31542442-31542610)
chr5 (64-180)||(6756257-6756372)
chr5 (13-182)||(16775897-16776065)
chr5 (64-182)||(36402728-36402845)
chr5 (34-182)||(10749505-10749652)
chr5 (83-183)||(18186489-18186588)
chr5 (64-182)||(2174680-2174797)
chr5 (34-182)||(10756960-10757107)
chr5 (34-182)||(15354918-15355065)
chr5 (34-182)||(15357194-15357341)
chr5 (64-183)||(25921874-25921993)
chr5 (90-182)||(39797849-39797940)
chr5 (82-182)||(31466397-31466496)
chr5 (34-187)||(23664829-23664981)
chr5 (34-187)||(23793606-23793758)
chr5 (118-182)||(21684905-21684969)
chr5 (123-182)||(661227-661286)
chr5 (34-182)||(23667109-23667256)
chr5 (13-77)||(21684832-21684896)
chr5 (180-251)||(19319756-19319826)
chr5 (64-182)||(38960487-38960604)
chr5 (202-248)||(7743865-7743911)
chr5 (182-251)||(7929283-7929352)
chr5 (180-245)||(11769917-11769982)
chr5 (13-50)||(39797959-39797996)
chr5 (34-113)||(31179807-31179886)
chr5 (13-50)||(6756365-6756402)
chr5 (202-247)||(19319079-19319124)
chr5 (134-182)||(31179885-31179933)
[»] chr7 (20 HSPs)
chr7 (13-182)||(18567363-18567531)
chr7 (13-182)||(31435418-31435586)
chr7 (13-184)||(25542279-25542448)
chr7 (13-183)||(27306600-27306768)
chr7 (13-182)||(3878322-3878490)
chr7 (34-182)||(1047356-1047503)
chr7 (13-182)||(44314-44482)
chr7 (64-182)||(26804345-26804462)
chr7 (13-182)||(35379-35547)
chr7 (34-182)||(2935070-2935217)
chr7 (34-182)||(9027540-9027687)
chr7 (99-183)||(1049730-1049814)
chr7 (34-182)||(22136878-22137025)
chr7 (34-182)||(40551905-40552052)
chr7 (64-182)||(40837144-40837261)
chr7 (34-182)||(22107867-22108014)
chr7 (34-182)||(40549627-40549774)
chr7 (180-248)||(18290624-18290692)
chr7 (199-249)||(18289912-18289962)
chr7 (134-182)||(22392292-22392340)
[»] chr4 (44 HSPs)
chr4 (13-182)||(48486113-48486281)
chr4 (26-182)||(36919971-36920125)
chr4 (13-183)||(619818-619987)
chr4 (13-183)||(36921866-36922034)
chr4 (13-128)||(24880299-24880413)
chr4 (13-182)||(31849970-31850138)
chr4 (13-182)||(11006612-11006781)
chr4 (13-129)||(24878836-24878951)
chr4 (13-182)||(9176867-9177035)
chr4 (43-177)||(52942869-52943002)
chr4 (13-182)||(9174517-9174684)
chr4 (13-180)||(51015042-51015208)
chr4 (34-182)||(16932213-16932360)
chr4 (13-182)||(22044760-22044930)
chr4 (13-180)||(22803104-22803270)
chr4 (13-178)||(37089745-37089910)
chr4 (13-182)||(5637839-5638006)
chr4 (34-183)||(22783170-22783318)
chr4 (13-178)||(24888594-24888758)
chr4 (36-183)||(16934569-16934715)
chr4 (13-180)||(40091786-40091952)
chr4 (13-182)||(3824944-3825112)
chr4 (82-182)||(7941133-7941233)
chr4 (34-182)||(22780805-22780952)
chr4 (64-182)||(11434769-11434887)
chr4 (13-179)||(5198217-5198382)
chr4 (13-182)||(38408993-38409161)
chr4 (43-182)||(9148054-9148192)
chr4 (13-182)||(18846923-18847093)
chr4 (13-68)||(47274634-47274689)
chr4 (180-250)||(52541043-52541113)
chr4 (13-58)||(52942818-52942863)
chr4 (182-250)||(314184-314252)
chr4 (199-249)||(6560454-6560504)
chr4 (199-249)||(13918862-13918912)
chr4 (179-245)||(22680616-22680681)
chr4 (64-158)||(22801262-22801354)
chr4 (13-102)||(11008963-11009052)
chr4 (13-74)||(22047055-22047116)
chr4 (98-182)||(22048492-22048575)
chr4 (136-183)||(16631067-16631114)
chr4 (188-250)||(6554402-6554464)
chr4 (13-55)||(11434875-11434917)
chr4 (199-247)||(14265789-14265837)
[»] chr2 (25 HSPs)
chr2 (13-182)||(21521066-21521234)
chr2 (13-179)||(6259186-6259351)
chr2 (13-182)||(40032429-40032586)
chr2 (13-178)||(27104519-27104683)
chr2 (13-182)||(19502382-19502550)
chr2 (13-182)||(42064231-42064399)
chr2 (17-184)||(19504720-19504886)
chr2 (26-182)||(24162596-24162752)
chr2 (13-182)||(22407780-22407948)
chr2 (64-177)||(6264546-6264658)
chr2 (34-182)||(36559211-36559358)
chr2 (34-182)||(45332528-45332675)
chr2 (84-182)||(43623988-43624085)
chr2 (183-252)||(14904988-14905057)
chr2 (82-182)||(18800720-18800819)
chr2 (182-250)||(31965998-31966066)
chr2 (43-182)||(36561539-36561677)
chr2 (13-77)||(13910415-13910479)
chr2 (184-248)||(20106816-20106880)
chr2 (179-250)||(6910223-6910293)
chr2 (179-250)||(17682541-17682612)
chr2 (23-70)||(22287717-22287764)
chr2 (180-250)||(27879682-27879752)
chr2 (13-55)||(43623938-43623980)
chr2 (180-248)||(5202158-5202226)
[»] chr1 (35 HSPs)
chr1 (13-186)||(39462254-39462426)
chr1 (13-169)||(13214834-13214989)
chr1 (64-182)||(49687301-49687418)
chr1 (13-185)||(15823283-15823454)
chr1 (13-182)||(51752104-51752273)
chr1 (13-182)||(13761577-13761745)
chr1 (13-182)||(3579991-3580159)
chr1 (13-182)||(28840418-28840586)
chr1 (63-180)||(38925880-38925996)
chr1 (13-101)||(41646740-41646828)
chr1 (13-182)||(10400201-10400369)
chr1 (13-182)||(28842233-28842401)
chr1 (13-182)||(51749778-51749947)
chr1 (34-178)||(16225891-16226034)
chr1 (34-182)||(47177078-47177224)
chr1 (13-182)||(20302198-20302367)
chr1 (37-182)||(47179428-47179572)
chr1 (13-149)||(6823656-6823792)
chr1 (64-182)||(6822775-6822893)
chr1 (18-100)||(28207444-28207526)
chr1 (99-182)||(47451405-47451488)
chr1 (113-182)||(14098441-14098510)
chr1 (13-182)||(30790767-30790935)
chr1 (64-149)||(16231374-16231458)
chr1 (43-182)||(23783238-23783376)
chr1 (136-184)||(41646679-41646727)
chr1 (64-146)||(14098372-14098453)
chr1 (136-177)||(28207540-28207581)
chr1 (82-183)||(20291279-20291380)
chr1 (134-183)||(13461344-13461393)
chr1 (13-50)||(14098342-14098379)
chr1 (182-250)||(45918385-45918453)
chr1 (180-249)||(3836168-3836237)
chr1 (13-50)||(49687411-49687448)
chr1 (193-250)||(49881658-49881715)
[»] scaffold0131 (1 HSPs)
scaffold0131 (13-181)||(14768-14936)
[»] chr8 (29 HSPs)
chr8 (13-182)||(27829093-27829261)
chr8 (13-182)||(27826782-27826950)
chr8 (13-183)||(12517397-12517566)
chr8 (13-182)||(15072506-15072674)
chr8 (13-182)||(15067777-15067945)
chr8 (34-182)||(18812668-18812815)
chr8 (34-182)||(18810483-18810630)
chr8 (64-183)||(4423834-4423952)
chr8 (34-188)||(43079341-43079494)
chr8 (13-178)||(14807552-14807716)
chr8 (13-182)||(44720617-44720785)
chr8 (43-178)||(28251988-28252122)
chr8 (34-182)||(43081722-43081869)
chr8 (188-250)||(41527193-41527255)
chr8 (180-249)||(40262467-40262536)
chr8 (179-245)||(12157113-12157178)
chr8 (181-248)||(17887910-17887977)
chr8 (180-250)||(15342449-15342518)
chr8 (180-250)||(15431514-15431583)
chr8 (180-250)||(15522818-15522887)
chr8 (180-248)||(8358955-8359023)
chr8 (13-77)||(28251937-28252001)
chr8 (199-249)||(8358199-8358249)
chr8 (181-231)||(12159878-12159928)
chr8 (182-248)||(25087771-25087837)
chr8 (181-214)||(19220815-19220848)
chr8 (13-49)||(3886292-3886328)
chr8 (82-149)||(3886340-3886407)
chr8 (180-248)||(19223800-19223868)
[»] chr6 (29 HSPs)
chr6 (64-183)||(1072278-1072396)
chr6 (13-183)||(8995254-8995423)
chr6 (13-183)||(9019701-9019870)
chr6 (13-182)||(19227780-19227948)
chr6 (13-183)||(15530493-15530662)
chr6 (13-182)||(14507546-14507716)
chr6 (34-182)||(33308685-33308832)
chr6 (34-182)||(33310954-33311101)
chr6 (34-182)||(26068735-26068882)
chr6 (34-182)||(29755132-29755279)
chr6 (13-178)||(11983400-11983562)
chr6 (13-182)||(15533052-15533220)
chr6 (34-182)||(26066464-26066611)
chr6 (13-98)||(30729199-30729284)
chr6 (182-251)||(4790957-4791026)
chr6 (13-98)||(15541511-15541596)
chr6 (134-182)||(24191620-24191668)
chr6 (13-77)||(24192666-24192730)
chr6 (134-182)||(24192717-24192765)
chr6 (199-249)||(15879461-15879511)
chr6 (64-182)||(32279794-32279910)
chr6 (13-77)||(24191569-24191633)
chr6 (203-248)||(9450903-9450948)
chr6 (134-182)||(15541631-15541679)
chr6 (13-125)||(4816639-4816749)
chr6 (182-250)||(10189505-10189573)
chr6 (213-249)||(18089428-18089464)
chr6 (134-182)||(30729298-30729346)
chr6 (19-55)||(32279898-32279934)
[»] scaffold0250 (1 HSPs)
scaffold0250 (13-182)||(2629-2797)
[»] scaffold0127 (1 HSPs)
scaffold0127 (34-182)||(12907-13054)
[»] scaffold0025 (2 HSPs)
scaffold0025 (13-178)||(69665-69829)
scaffold0025 (106-178)||(73468-73540)
[»] scaffold0140 (2 HSPs)
scaffold0140 (34-182)||(21915-22062)
scaffold0140 (34-182)||(24190-24337)
[»] scaffold0472 (1 HSPs)
scaffold0472 (34-182)||(5927-6074)
[»] scaffold0068 (2 HSPs)
scaffold0068 (118-182)||(28941-29005)
scaffold0068 (13-77)||(29014-29078)
[»] scaffold0211 (1 HSPs)
scaffold0211 (182-250)||(18610-18678)
[»] scaffold0339 (1 HSPs)
scaffold0339 (13-68)||(3859-3914)
[»] scaffold0114 (1 HSPs)
scaffold0114 (182-250)||(36901-36969)
[»] scaffold0380 (1 HSPs)
scaffold0380 (186-248)||(16669-16731)
[»] scaffold0284 (2 HSPs)
scaffold0284 (199-249)||(6987-7037)
scaffold0284 (209-250)||(1013-1054)
[»] scaffold0216 (1 HSPs)
scaffold0216 (199-249)||(29731-29781)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 32264412 - 32264658
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32264412 aatatgtttctgttattcgctgccagcgcaccatcgtgccacgttgcaagcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactgaaacctc 32264511  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcacatgttcaaaaaggttgattggtggtggtttc 212  Q
    | || |||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32264512 caatcgtgccacgtt-cccagccatcgtgccacgatttctgcaaaacctgattttaagttaactctcacatgttcaaaaaggttgattggtggtggtttc 32264610  T
Q  213 atggagggaggtttatgtttctttctttcatgagaagaatgaagttag 260  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32264611 atggagggaagtttatgtttctttctttcatgagaagaatgaagttag 32264658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 18099554 - 18099707
Alignment:
Q  28 ttcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgtt 127  Q
    ||||| ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| |||||||||||| || |||||||| || ||||||||||    
T  18099554 ttcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgtcttgcctcaaaa-ctgaaacctccaatcgtgccacgtt 18099652  T
Q  128 gcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    ||||||||||||||||||||||| || || ||||||||||||||||||||||||||    
T  18099653 gcccagccatcgtgccacgattt-tgcagaaacctgattttaagttaactctcaca 18099707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 10956396 - 10956563
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| ||||||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| |||||| | |||||| |||||||    
T  10956396 aatacgtttatgttattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcc-ccaaaactgaaacctc 10956494  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || |||||| | || |||||||| ||||||||||| ||| ||| ||||||||||||||||||||||||    
T  10956495 caatcgtgccatgatgtccagccat-gtgccacgattcctgcagatcctgattttaagttaactctcaca 10956563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 26720436 - 26720268
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| |||||||||||| |||||||||| |||| ||| |||||||||||||||||    |||||||  ||||||||||   | |||||||    
T  26720436 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcctcaaact-tgaaacctc 26720338  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | ||  ||||||||||| ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  26720337 caatcctgccacgttgctcagccatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 26720268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 22114674 - 22114842
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| |||||||||| |||| |||||||||||| |||| ||| | ||||||||||||| |    ||||||| ||||||||||||||| ||||||     
T  22114674 aatacgtttctgttattcgccgccatcgcaccatcgtgccacgatgcgaccccatcgtgccacaatttttccagtgccttgcctcaaaaactgaaacct- 22114772  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |||| ||||||||||||||| |||||||||||||| ||||  || ||||||||||||||||||||||||||    
T  22114773 ccatcgtgccacgttgcccaaccatcgtgccacga-ttctacagaaacctgattttaagttaactctcaca 22114842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 32218953 - 32218836
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctga 163  Q
    ||||||||||||| ||||||||| |||||||||||||   | |||||||| || |||||||||||||||  ||||||||||||||||||| |||||||||    
T  32218953 ccatcgtgccacggaaaatccagcgacttgcctcaaagt-tgaaacctccaatcgtgccacgttgcccaatcatcgtgccacgatttctgcagaacctga 32218855  T
Q  164 ttttaagttaactctcaca 182  Q
    |||||||||||||||||||    
T  32218854 ttttaagttaactctcaca 32218836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 48362069 - 48362186
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctga 163  Q
    ||||| |||||||||||||| ||| ||||||||||||| || |||| ||| || ||||||||||||||| |||||||||||||||||||  |||||||||    
T  48362069 ccatcatgccacgaaaaatctagttacttgcctcaaaa-ctgaaacttccaatcgtgccacgttgcccaaccatcgtgccacgatttctacagaacctga 48362167  T
Q  164 ttttaagttaactctcaca 182  Q
    |||||||||||||||||||    
T  48362168 ttttaagttaactctcaca 48362186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 5191541 - 5191374
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| ||||||||||||||||||||||| |||| ||  |||||||||||||||||    ||||||  |||||||| |||||| |||||||    
T  5191541 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgagatcccatcgtgccacgatttttccagtaccttgcctc-aaaactgaaacctc 5191443  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcac 181  Q
    | || |||||||| |||||||| |||||||||||| ||||| || || ||||||||||||||||||||||    
T  5191442 caatcgtgccacgatgcccagcaatcgtgccacga-ttctgcagaaatctgattttaagttaactctcac 5191374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 5522984 - 5523152
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| ||||||||||||||||||||||| |||| ||| ||||||| |||||||||    ||||||  |||||||| |||||| ||||| |    
T  5522984 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccattgtgccacgatttttccagtaccttgcctc-aaaactgaaaccac 5523082  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || |||||| |||||||||| ||| |||||||||| ||  ||| | ||||||||||||||||||||||    
T  5523083 caatcgtgccatgttgcccagcaatcttgccacgattcctccagatcttgattttaagttaactctcaca 5523152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 183
Target Start/End: Complemental strand, 50493823 - 50493675
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||  |  ||||||||||||||    ||||||| ||||||  |||||||||||||||| || ||||||||||||||||    
T  50493823 gccagcgcaccatcgtgccacgatgagactccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccag 50493725  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcacat 183  Q
    | |||||||||||| ||||| || |||||||||||||||||||||||||||    
T  50493724 ctatcgtgccacga-ttctgcagaaacctgattttaagttaactctcacat 50493675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 1321329 - 1321161
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| |||||||||||| |||||||||| |||| ||| | |||||||||||||||    | |||||  ||||||||||   | |||||||    
T  1321329 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgaccccatcgtgccacgattttttcagtgctttgcctcaaact-tgaaacctc 1321231  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
      || ||||||||||||||||| |||||||||||||| ||| ||| | ||||||||||||||||||||||    
T  1321230 taatcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttgattttaagttaactctcaca 1321161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 38210214 - 38210067
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    |||||||||| |||||| |||| ||  | |||||||||||||||    ||||||| ||||||  |||||||||||||||| || ||||||||||||||||    
T  38210214 gccagcgcactatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccag 38210116  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    || ||||||||||| ||||| || ||||||||||||||||||||||||||    
T  38210115 ccgtcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 38210067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 11162990 - 11162891
Alignment:
Q  82 tccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcac 181  Q
    ||||||| ||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||| ||| ||| | |||||||||||||||||||||    
T  11162990 tccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttgattttaagttaactctcac 11162892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 182
Target Start/End: Original strand, 53896613 - 53896754
Alignment:
Q  40 gcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcg 139  Q
    ||||||||||| |||| ||  | |||||||||||||||    ||||||  ||||||  |||||||||||||||| || ||||||||||||||||| ||||    
T  53896613 gcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtaccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccagcaatcg 53896711  T
Q  140 tgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |||||||| ||||| || ||||||||||||||||||||||||||    
T  53896712 tgccacga-ttctgcagaaacctgattttaagttaactctcaca 53896754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 18097331 - 18097422
Alignment:
Q  90 cttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |||||||||||| || |||||||| || ||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||    
T  18097331 cttgcctcaaaa-ctgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattt-tgcagaaacctgattttaagttaactctcaca 18097422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 24177167 - 24176999
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| ||||||||| |||||  ||| |||||||||||| ||| |||| |||||||||||||||      ||||||||||||| ||| || || ||||  |    
T  24177167 aatacgtttatgtttttcgcctccaacgcaccatcgtgccacattgcgatcccatcgtgccacattttttccagtgacttgcttcagaa-ctgaaacaac 24177069  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || |||||||||||||| || | |||||||||||||||  ||||| ||||||||||||||||||||||    
T  24177068 caatcgtgccacgttgccctgcaaacgtgccacgatttctccagaacttgattttaagttaactctcaca 24176999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 11170244 - 11170145
Alignment:
Q  82 tccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcac 181  Q
    ||||||| ||||||||||||||  |||||||| || ||||||||||||||||| | |||||||||||| ||| ||| | |||||||||||||||||||||    
T  11170244 tccagtgccttgcctcaaaaaccgaaacctcc-atcgtgccacgttgcccagcaaccgtgccacgattcctgcagatcttgattttaagttaactctcac 11170146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 41 - 182
Target Start/End: Original strand, 6063866 - 6064006
Alignment:
Q  41 caccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgt 140  Q
    |||||||||| |||| ||| | |||||||||||||||    | ||||| ||||||  |||||||||||||||| ||||||||||||||||  ||||||||    
T  6063866 caccatcgtgccacgatgcgaccccatcgtgccacgattttttcagtgccttgcccaaaaaactaaaacctcc-attgtgccacgttgccttgccatcgt 6063964  T
Q  141 gccacgatttctgta-gaacctgattttaagttaactctcaca 182  Q
    ||||||| ||||| |  |||||||||||||||||| |||||||    
T  6063965 gccacga-ttctgcataaacctgattttaagttaattctcaca 6064006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 7606880 - 7606963
Alignment:
Q  98 aaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    ||||||| |||||||| || |||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||    
T  7606880 aaaaactgaaacctcc-atcgtgccacgttgcccagccatcgtgtcacga-ttctgcagaaacctgattttaagttaactctcaca 7606963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 35777280 - 35777163
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctg 162  Q
    ||||||||||||||    ||||||| ||||||  |||||||||||||||| || |||||||||||||||||  ||||||||||| ||||| || || ||     
T  35777280 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccagctgtcgtgccacga-ttctgcagaaatcta 35777183  T
Q  163 attttaagttaactctcaca 182  Q
    ||||||||||||||||||||    
T  35777182 attttaagttaactctcaca 35777163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 5899608 - 5899492
Alignment:
Q  32 ctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgccc 131  Q
    ||||||||||||||||||| |||| ||| | |||||||||||| ||    ||||||| ||||||| |||||||||||| | |||| ||||||||||||||    
T  5899608 ctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccatgatttttccagtgccttgcctaaaaaactaaaacat-ccatcgtgccacgttgccc 5899510  T
Q  132 agccatcgtgccacgatt 149  Q
      | ||||||||| ||||    
T  5899509 ttcaatcgtgccatgatt 5899492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 10020045 - 10019996
Alignment:
Q  180 acatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatg 229  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  10020045 acatgttcaaaaaggttggttggtggtggtttcatcgagggaggtttatg 10019996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 34850758 - 34850827
Alignment:
Q  182 atgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaagaa 251  Q
    |||||||||||  ||| |||| ||||||||||||||| | |||||||||||||||||| |||||||||||    
T  34850758 atgttcaaaaattttggttggcggtggtttcatggagaggggtttatgtttctttcttccatgagaagaa 34850827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 182
Target Start/End: Complemental strand, 5886133 - 5885983
Alignment:
Q  32 ctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacg-ttgcc 130  Q
    ||||||||||||||||||  |||| ||| | |||||||||||||||    ||||||  ||||||| |||||||||||| | |||| |||||||| ||||     
T  5886133 ctgccagcgcaccatcgtaccacgatgcgaccccatcgtgccacgatttttccagtaccttgcctaaaaaactaaaacat-ccatcgtgccacgtttgcg 5886035  T
Q  131 cagccatcgtgccacgatttctgt-agaacctgattttaagttaactctcaca 182  Q
    |  | |||||||||||| |||||| | ||||| ||||||||||||||||||||    
T  5886034 cttcaatcgtgccacga-ttctgtaaaaacctaattttaagttaactctcaca 5885983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 45882827 - 45882763
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacga 77  Q
    |||| |||| ||||||||| || ||||||||||||||| |||||||||||||||||||| |||||    
T  45882827 aataggtttctgttattcgttgtcagcgcaccatcgtgccacgttgcaatcccatcgtggcacga 45882763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 51057 - 50987
Alignment:
Q  179 cacatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    ||||||||||||||||||  ||||| ||||||||| |||||||| |||||||| ||||||| ||||||||||    
T  51057 cacatgttcaaaaaggttagttggt-gtggtttcacggagggagatttatgttcctttcttgcatgagaaga 50987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 38889875 - 38889756
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaa--cct 161  Q
    ||||||||||||||    |||| || ||||||| ||||||| |||||||| || |||||||||||||  |||||||| |||||||| ||| ||||  |||    
T  38889875 ccatcgtgccacgatttttccaatgccttgcctaaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtaccacgatt-ctgcagaaaacct 38889778  T
Q  162 gattttaagttaactctcacat 183  Q
     |||||||||||||||||||||    
T  38889777 aattttaagttaactctcacat 38889756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 10958692 - 10958756
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacga 77  Q
    |||| |||| ||||||| |||||||||||||||||||| |||| ||| | |||||||||||||||    
T  10958692 aatacgtttctgttattggctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacga 10958756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 37836888 - 37836935
Alignment:
Q  203 tggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    |||||||||||| ||| |||||||||||||||| ||||||||||||||    
T  37836888 tggtggtttcatagagagaggtttatgtttcttactttcatgagaaga 37836935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 45882707 - 45882657
Alignment:
Q  134 ccatcgtgccacgatttctgtagaacctgattttaagttaactctcacatg 184  Q
    |||||||| |||||||| || ||| ||||||||||||||||||||||||||    
T  45882707 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcacatg 45882657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 10192401 - 10192496
Alignment:
Q  52 cacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatt 149  Q
    |||| ||| |||||||||||||||||    ||||||| |||||||||||| || |||||||| || |||||||||||||  || ||||||||||||||    
T  10192401 cacgatgcgatcccatcgtgccacgatttttccagtgccttgcctcaaaa-ctgaaacctcc-atcgtgccacgttgccttgcgatcgtgccacgatt 10192496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 25388746 - 25388665
Alignment:
Q  32 ctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcc 113  Q
    ||||||||||||||||||| |||| ||  | |||||||||||||||    ||||||| ||||||  ||||||||||||||||    
T  25388746 ctgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc 25388665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 3859416 - 3859352
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacga 77  Q
    |||| |||||| |||||||| ||||||||||||||||| |||| ||  | |||||||||||||||    
T  3859416 aatacgtttatattattcgccgccagcgcaccatcgtgccacgatgtgaccccatcgtgccacga 3859352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 20779492 - 20779424
Alignment:
Q  180 acatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaa 248  Q
    ||||||||||||| |||||||| ||||| ||||||| ||||| |||||| || ||||| | ||||||||    
T  20779492 acatgttcaaaaaagttgattgatggtgatttcatgaagggatgtttatattcctttcatccatgagaa 20779424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 6719502 - 6719544
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacg 55  Q
    ||||||||| |||||||||| ||||||||||||||||| ||||    
T  6719502 aatatgtttctgttattcgccgccagcgcaccatcgtgccacg 6719544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 10084762 - 10084804
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacg 55  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||    
T  10084762 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacg 10084804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 10191682 - 10191724
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacg 55  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||    
T  10191682 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacg 10191724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 18162451 - 18162405
Alignment:
Q  136 atcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    |||||| |||||||| || ||| ||||||||||||||||||||||||    
T  18162451 atcgtggcacgatttatgcagatcctgattttaagttaactctcaca 18162405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 18162552 - 18162510
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacg 55  Q
    |||| |||| |||||||||||||||||||||||||||| ||||    
T  18162552 aatacgtttctgttattcgctgccagcgcaccatcgtggcacg 18162510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 24979595 - 24979553
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacg 55  Q
    ||||||||||||||||||||| |||||| ||||||||| ||||    
T  24979595 aatatgtttatgttattcgctaccagcgtaccatcgtgccacg 24979553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 38889905 - 38889863
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacg 55  Q
    ||||||||| |||||||||| ||||||||||||||||| ||||    
T  38889905 aatatgtttctgttattcgccgccagcgcaccatcgtgccacg 38889863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 55473 - 55440
Alignment:
Q  181 catgttcaaaaaggttgattggtggtggtttcat 214  Q
    ||||||||||||||||| ||||||||||||||||    
T  55473 catgttcaaaaaggttggttggtggtggtttcat 55440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 25388666 - 25388618
Alignment:
Q  134 ccatcgtgccacgatttctgtagaa-cctgattttaagttaactctcaca 182  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  25388666 ccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 25388618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 52557 - 52489
Alignment:
Q  180 acatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaa 248  Q
    ||||||||||||||||   ||| ||||| ||||||  ||||||||||||||  |||| |||||||||||    
T  52557 acatgttcaaaaaggtgagttgatggtgatttcataaagggaggtttatgtacctttatttcatgagaa 52489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 10085490 - 10085576
Alignment:
Q  61 atcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatt 149  Q
    |||||||||||||||||    ||||||| |||||||| |||||| |||||| |||| |||||||||||||  || ||| ||||||||||    
T  10085490 atcccatcgtgccacgatttttccagtgccttgcctc-aaaactgaaacct-ccatcgtgccacgttgccttgcgatcatgccacgatt 10085576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 24979565 - 24979529
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaa 100  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  24979565 ccatcgtgccacgaaaaattcagtgacttgccacaaa 24979529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 32262823 - 32262883
Alignment:
Q  188 aaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaa 248  Q
    |||||||| |||||   ||||| |||||||| |||||||||||| |||| |||||||||||    
T  32262823 aaaaaggtggattgacagtggtctcatggagtgaggtttatgttcctttgtttcatgagaa 32262883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 7e-58; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 20507833 - 20508001
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| ||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  20507833 aatatgtttctgttattcgctgctagcgcaccttcgtgccatgttgcaatcccatcgtgccacgaaaaatccaatgacttgcctc-aaaactaaaacctc 20507931  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || |||| |||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||    
T  20507932 caatcgtgctacgttgcccaactatcgtgccacgatttctgcagaacctgattttaagttaactctcaca 20508001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 45 - 182
Target Start/End: Original strand, 20504316 - 20504452
Alignment:
Q  45 atcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgcca 144  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||    
T  20504316 atcgtgccacgttgcaatcccatcgtgccacgaaaaatccattgacttgcctcaaaa-ctaaaacctccaatcgtgccacgttgcccagctatcgtgcca 20504414  T
Q  145 cgatttctgtagaacctgattttaagttaactctcaca 182  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  20504415 cgatttctgcagaacctgattttaagttaactctcaca 20504452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 21947935 - 21947770
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||||||||||||||   |||||||||| ||||||||||||||||||||||||| ||| ||||||||||| |||||||| || |||||||    
T  21947935 aatatgtttctgttattcgctgcca---caccatcgtgccacgttgcaatcccatcgtgccacgtaaagtccagtgacttacctcaaaa-ctgaaacctc 21947840  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || ||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21947839 caatcgtgtcacgttgcctagccatcgtgccacgatttctgcagaacctgattttaagttaactctcaca 21947770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 38882013 - 38881845
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| |||||||||| ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| |||||||||||||||||||||||    
T  38882013 aatacgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactaaaacctc 38881914  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || ||||||||||||||||| |||||||||||||| ||| ||| | ||||||||||||||||||||||    
T  38881913 c-atcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttgattttaagttaactctcaca 38881845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 65 - 182
Target Start/End: Original strand, 12556325 - 12556441
Alignment:
Q  65 catcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgat 164  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||  |||||||||||||| ||||||||||    
T  12556325 catcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaacctccaattgtgccacgttgcccagccattatgccacgatttctgcagaacctgat 12556423  T
Q  165 tttaagttaactctcaca 182  Q
    ||||| ||||||||||||    
T  12556424 tttaaattaactctcaca 12556441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 2818729 - 2818847
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctga 163  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||| || |||||| |||||| |||||||||||||||||||||| ||||||| |    
T  2818729 ccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaacctccaatcgtgccatgttgcctagccatcgtgccacgatttctgcagaacctaa 2818827  T
Q  164 ttttaag-ttaactctcaca 182  Q
    ||||||| ||||||||||||    
T  2818828 ttttaagtttaactctcaca 2818847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 34477485 - 34477632
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||| |||||||||||||||| || ||||||||||||||||    
T  34477485 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctcc-atcgtgccacgttgcccag 34477583  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |||||||||||||| ||||| || ||| ||||||||||||||||||||||    
T  34477584 ccatcgtgccacga-ttctgcagaaacttgattttaagttaactctcaca 34477632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 659829 - 659713
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctga 163  Q
    ||||||||||||||    |||||||||||||||||||  || |||||||| || ||||||||||||| |||||||||||||||||||||| |||||||||    
T  659829 ccatcgtgccacgatttttccagtgacttgcctcaaa--ctgaaacctccaatcgtgccacgttgcctagccatcgtgccacgatttctgcagaacctga 659732  T
Q  164 ttttaagttaactctcaca 182  Q
    |||||||||||||||||||    
T  659731 ttttaagttaactctcaca 659713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 31544966 - 31544798
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| ||  | ||||||||||||||||||| || ||  | |||||||||||||||    ||||||| ||||||  |||||||||||||||    
T  31544966 aatatgtttctgtttttatccgccagcgcaccatcgtgtctcgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctc 31544867  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    | || ||||||||||||||||| ||||||||||||||| || || ||||||||||||||||||||||||||    
T  31544866 c-atcgtgccacgttgcccagctatcgtgccacgattt-tgcagaaacctgattttaagttaactctcaca 31544798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 34479855 - 34479972
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctg 162  Q
    ||||||||||||||    ||||||| ||||||| |||||||||||||||| || |||||||||||||||||||||||||||||| ||||| || ||||||    
T  34479855 ccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctcc-atcgtgccacgttgcccagccatcgtgccacga-ttctgcagaaacctg 34479952  T
Q  163 attttaagttaactctcaca 182  Q
    ||||||||||||||||||||    
T  34479953 attttaagttaactctcaca 34479972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 4236538 - 4236374
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| |||| ||| ||||||||||||||||||| |||| ||| ||||||| |||||||||    ||||||| ||||||| |||| || |||||||    
T  4236538 aatacgtttctgtttttccctgccagcgcaccatcgtgccacgatgcgatcccattgtgccacgatttttccagtgccttgccttaaaa-ctgaaacctc 4236440  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactct 178  Q
    | || |||||||||||||||||||||||||||| | ||||| || || |||||||||||||||||||    
T  4236439 caatcgtgccacgttgcccagccatcgtgccac-aattctgcagaaatctgattttaagttaactct 4236374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 31542610 - 31542442
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| ||  | ||||||||||||||||||| || ||  | |||||||||||||||    ||||||| ||||||  |||||||||||||||    
T  31542610 aatatgtttctgtttttatccgccagcgcaccatcgtgtctcgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctc 31542511  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaa-cctgattttaagttaactctcaca 182  Q
    | || ||||||||||||||||| |||||| |||||||| || |||| ||||||||||||||||||||||||    
T  31542510 c-atcgtgccacgttgcccagctatcgtgtcacgattt-tgcagaaacctgattttaagttaactctcaca 31542442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 6756372 - 6756257
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctga 163  Q
    |||||||||||||||||||||||||||||||||||||   | |||||||  || |||||| |||  |||| |||||||||||||||||||||||||||||    
T  6756372 ccatcgtgccacgaaaaatccagtgacttgcctcaaagt-tgaaacctctaatcgtgccatgttatccaggcatcgtgccacgatttctgtagaacctga 6756274  T
Q  164 ttttaagttaactctca 180  Q
    |||||| ||||| ||||    
T  6756273 ttttaaattaaccctca 6756257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 16776065 - 16775897
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| |||| |||||||||||||||||| |||| ||| | |||||||||||||||    | |||||  ||||||||||   | |||||||    
T  16776065 aatatgtttctgtttttcgatgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgattttttcagtgctttgcctcaaact-tgaaacctc 16775967  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || ||| |||||||||  ||||||||||||||||| ||| ||| |||||||||||||||| |||||||    
T  16775966 caatcgtgtcacgttgccttgccatcgtgccacgattcctgcagatcctgattttaagttaattctcaca 16775897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 36402728 - 36402845
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctg 162  Q
    |||||||||||||||||| ||||||||||||||| |||||| |||||||| || |||| | |||||||||||||||||||  || ||||| || |||||     
T  36402728 ccatcgtgccacgaaaaaaccagtgacttgcctc-aaaactgaaacctccaatcgtgctatgttgcccagccatcgtgcctaga-ttctgcagaaaccta 36402825  T
Q  163 attttaagttaactctcaca 182  Q
    ||||||||||||||||||||    
T  36402826 attttaagttaactctcaca 36402845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 10749652 - 10749505
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  |||||||||||||| |||| ||||| ||  ||||||    
T  10749652 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacct-ccatcgtgccgcgaagcccag 10749554  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    || ||||||||||| || || || ||||||||||||||||||||||||||    
T  10749553 ccgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 10749505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 18186489 - 18186588
Alignment:
Q  83 ccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcac 181  Q
    ||||||||||||||||||| || |||||||| || ||||||||||||||||||||||| |||||| ||||| || ||| |||||||||||||||||||||    
T  18186489 ccagtgacttgcctcaaaa-ctgaaacctccaatcgtgccacgttgcccagccatcgtaccacga-ttctgcagaaacttgattttaagttaactctcac 18186586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 2174797 - 2174680
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaa-cctg 162  Q
    ||||||||||||||    ||||||| ||||||| ||||||| |||||||| || |||||||||||||  ||||||||||||||||| ||| |||| ||||    
T  2174797 ccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctg 2174700  T
Q  163 attttaagttaactctcaca 182  Q
    ||||||||||||||||||||    
T  2174699 attttaagttaactctcaca 2174680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 10757107 - 10756960
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  |||||||||||||| |||| ||||| ||  ||||||    
T  10757107 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacct-ccatcgtgccgcgaagcccag 10757009  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    || |||||| |||| || || || ||||||||||||||||||||||||||    
T  10757008 ccgtcgtgctacga-ttgtgcagaaacctgattttaagttaactctcaca 10756960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 15354918 - 15355065
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  |||||||||||||| |||| ||||| ||  ||||||    
T  15354918 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacct-ccatcgtgccgcgaagcccag 15355016  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |  ||||||||||| || || || ||||||||||||||||||||||||||    
T  15355017 ctgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 15355065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 15357194 - 15357341
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  |||||||||||||| |||| ||||| ||  ||||||    
T  15357194 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacct-ccatcgtgccgcgaagcccag 15357292  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |  ||||||||||| || || || ||||||||||||||||||||||||||    
T  15357293 ctgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 15357341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 25921874 - 25921993
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaa-ctaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaa-cct 161  Q
    ||||||||||||||    ||||||| ||||||||||||| || |||||||| || ||||||||||| ||| |||||||||||||||| ||| |||| |||    
T  25921874 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctcc-atcgtgccacgttgtccaaccatcgtgccacgatt-ctgcagaaacct 25921971  T
Q  162 gattttaagttaactctcacat 183  Q
    ||||||||||||||||||||||    
T  25921972 gattttaagttaactctcacat 25921993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 39797940 - 39797849
Alignment:
Q  90 cttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    ||||||||||||||| |||||||| ||  ||||||||||||||||||||||||||||| || || || ||||||||||||||||||||||||||    
T  39797940 cttgcctcaaaaactgaaacctcc-atcatgccacgttgcccagccatcgtgccacga-ttatgcagaaacctgattttaagttaactctcaca 39797849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 31466397 - 31466496
Alignment:
Q  82 tccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcac 181  Q
    ||||||||||||||||| || || |||| || ||| ||||||||||||||  | |||||||||||||| ||| | |||||||||||||||||||||||||    
T  31466397 tccagtgacttgcctcataa-ctgaaacatctcatcgtgccacgttgcccttcaatcgtgccacgattcctgcaaaacctgattttaagttaactctcac 31466495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 34 - 187
Target Start/End: Complemental strand, 23664981 - 23664829
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| |||||||||||||||||    ||||||| ||| ||  ||||| ||||| || |||| ||||| ||  ||||||    
T  23664981 gccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgcctttcccaaaaaaataaaaact-ccatcgtgccgcgaagcccag 23664883  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcacatgttc 187  Q
    |  ||||||||||| || || || |||||||||||||||||||||||||||||||    
T  23664882 ctgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcacatgttc 23664829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 34 - 187
Target Start/End: Original strand, 23793606 - 23793758
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| |||||||||||||||||    ||||||| ||| ||  ||||| ||||| || |||| ||||| ||  ||||||    
T  23793606 gccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgcctttcccaaaaaaataaaaact-ccatcgtgccgcgaagcccag 23793704  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcacatgttc 187  Q
    |  ||||||||||| || || || |||||||||||||||||||||||||||||||    
T  23793705 ctgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcacatgttc 23793758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 21684905 - 21684969
Alignment:
Q  118 gtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||    
T  21684905 gtgccacgttgcccagccatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 21684969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 661227 - 661286
Alignment:
Q  123 acgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    |||||||| ||||||| | |||||||||||| ||||||||||||||||||||||||||||    
T  661227 acgttgcctagccatcataccacgatttctgcagaacctgattttaagttaactctcaca 661286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 23667256 - 23667109
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| |||||||||||||||||    ||||||| ||| ||  ||||| ||||| || |||| ||||| ||  ||||||    
T  23667256 gccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgcctttcccaaaaaaataaaaact-ccatcgtgccgcgaagcccag 23667158  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |  ||||||||||| || || || ||||||||||||||||||||||||||    
T  23667157 ctgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 23667109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 21684832 - 21684896
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacga 77  Q
    ||||||||| |||| ||||||||||||||||||||||| |||| ||| | |||||||||||||||    
T  21684832 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacga 21684896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 19319756 - 19319826
Alignment:
Q  180 acatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaagaa 251  Q
    |||||||||||||||||||||| |  |||||||||| ||||||||||||||| |||| |||||||| |||||    
T  19319756 acatgttcaaaaaggttgattgattatggtttcatgtagggaggtttatgttacttt-tttcatgaaaagaa 19319826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 38960487 - 38960604
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaa-cctg 162  Q
    ||||||||||||||    ||||||| ||||||  |||||||||||||||| || ||||| |   |||||||| |||||||||||||  || |||| ||||    
T  38960487 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccgcaaagcccagccgtcgtgccacgattg-tgcagaaacctg 38960584  T
Q  163 attttaagttaactctcaca 182  Q
    ||||||||||||||||||||    
T  38960585 attttaagttaactctcaca 38960604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 7743865 - 7743911
Alignment:
Q  202 gtggtggtttcatggagggaggtttatgtttctttctttcatgagaa 248  Q
    |||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  7743865 gtggtgatttcatggagggaggtttatgttcctttctttcataagaa 7743911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 7929352 - 7929283
Alignment:
Q  182 atgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaagaa 251  Q
    ||||||||||   ||| |||| ||||||||| ||||| | |||||||||||||||||| |||||||||||    
T  7929352 atgttcaaaatttttggttggcggtggtttcgtggagaggggtttatgtttctttcttccatgagaagaa 7929283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 11769917 - 11769982
Alignment:
Q  180 acatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatga 245  Q
    ||||||||||||| |||| |||||| || ||| |||||||| | |||||||| |||||||||||||    
T  11769917 acatgttcaaaaatgttggttggtgatgattttatggagggtgatttatgttcctttctttcatga 11769982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 39797996 - 39797959
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtg 50  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  39797996 aatatgtttctgttattcgctgccagcgcaccatcgtg 39797959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 31179807 - 31179886
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcc 113  Q
    ||||||||||||||||| |||| ||  | |||||||||||||||    ||||||| ||||||  ||||||||||||||||    
T  31179807 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgtcttgcccaaaaaactaaaacctcc 31179886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 6756402 - 6756365
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtg 50  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  6756402 aatacgtttctgttattcgctgccagcgcaccatcgtg 6756365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 19319079 - 19319124
Alignment:
Q  202 gtggtggtttcatggagggaggtttatgtttctttctttcatgaga 247  Q
    |||||| ||| | |||| ||||||||||||||||||||||||||||    
T  19319079 gtggtgattttacggagagaggtttatgtttctttctttcatgaga 19319124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 31179885 - 31179933
Alignment:
Q  134 ccatcgtgccacgatttctgtagaa-cctgattttaagttaactctcaca 182  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  31179885 ccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 31179933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 18567531 - 18567363
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| ||||||||| |||||||||||||||||| || ||||  | ||||||||||||||||||||||||||||||||||||||| || |||||||    
T  18567531 aatacgtttctgttattcgttgccagcgcaccatcgtgccaagttgtgaccccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaacctc 18567433  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  18567432 caatcgtgccactttgcccagctatcgtgccacgatttctgtagaacctgattttaagtcaactctcaca 18567363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 31435418 - 31435586
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| ||||||||| |||||||||||||||||| || ||||  | ||||||||||||||||||||||||||||||||||||||| || |||||||    
T  31435418 aatacgtttctgttattcgttgccagcgcaccatcgtgccaagttgtgaccccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaacctc 31435516  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  31435517 caatcgtgccactttgcccagctatcgtgccacgatttctgtagaacctgattttaagtcaactctcaca 31435586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 25542448 - 25542279
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||    || |||| |||||||  |||||| |||||||    
T  25542448 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctc 25542350  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcacatg 184  Q
    | || ||||||||||||||||| |||||||||| ||| ||| ||| | ||||||||||||||||||||||||    
T  25542349 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcacatg 25542279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 27306600 - 27306768
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| ||||||||||||| |||||||||||||| ||||  || | |||||||||||||||    |||| ||||||||||||||| || |||||||    
T  27306600 aatacgtttctgttattcgctgctagcgcaccatcgtgccacgaagcgaccccatcgtgccacgatttttccaatgacttgcctcaaaa-ctgaaacctc 27306698  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcacat 183  Q
    | || ||||||||||| ||||||||||||||||||||| || | ||||| |||||||||||||||||||||    
T  27306699 caatcgtgccacgttgtccagccatcgtgccacgattt-tgcaaaaccttattttaagttaactctcacat 27306768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 3878490 - 3878322
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| |||||||||||||||||| ||||||||| |||| ||| | |||||||||||||||    |||||||  ||||||||||   | |||||||    
T  3878490 aatacgtttctgttattcgctgccagcgtaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctcaaact-tgaaacctc 3878392  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    | || |||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||    
T  3878391 caatcgtgccacgttgcccagccatcgtgccacga-ttctgcagaaatctgattttaagttaactctcaca 3878322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 1047356 - 1047503
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||  | |||||||||||||||    ||||||| ||||||  |||||||||||||||| || ||||||||||||||||    
T  1047356 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccag 1047454  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    || ||||||||||| ||||| || ||||||||||||||||||||||||||    
T  1047455 ccgtcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 1047503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 44482 - 44314
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||||||||||| |||||||||||||||||||| |||| ||| | |||||||||||| ||    |||||||  |||| || |||  | |||||||    
T  44482 aatatgtttatgttatttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccatgatttttccagtgctttgcgtc-aaacttgaaacctc 44384  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || ||||||| ||||||||  |||||||||||||| ||| ||| | ||||||||||||||||||||||    
T  44383 caatcgtgccacattgcccagaaatcgtgccacgattcctgcagatcttgattttaagttaactctcaca 44314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 26804462 - 26804345
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctg 162  Q
    ||||||||||||||    |||| || |||||||||||| || |||||||| || || ||||||||||||||||||||||||||| |||||||| ||||||    
T  26804462 ccatcgtgccacgatttttccactgccttgcctcaaaa-ctgaaacctccaatcgtaccacgttgcccagccatcgtgccacga-ttctgtagaaacctg 26804365  T
Q  163 attttaagttaactctcaca 182  Q
    ||||||||||||||||||||    
T  26804364 attttaagttaactctcaca 26804345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 35547 - 35379
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| || |||| ||||||||||||| |||| | |||| ||| | |||||||||||||||    |||||||  ||||||||||   | |||||||    
T  35547 aatacgtttctgctatttgctgccagcgcacgatcgggccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctcaaact-tgaaacctc 35449  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || ||||||||||||| ||| |||||||||||||| ||| ||| | ||||||||||||||||||||||    
T  35448 caatcgtgccacgttgcctagcaatcgtgccacgattcctgcagatcttgattttaagttaactctcaca 35379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 2935217 - 2935070
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  |||||||||||||| |||| ||||| ||  ||||||    
T  2935217 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacct-ccatcgtgccgcgaagcccag 2935119  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    || ||||||||||| || || || ||||||||||||||||||||||||||    
T  2935118 ccgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 2935070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 9027540 - 9027687
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  |||||||||||||| |||| ||||| ||  ||||||    
T  9027540 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacct-ccatcgtgccgcgaagcccag 9027638  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    || ||||||||||| || || || ||||||||||||||||||||||||||    
T  9027639 ccgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 9027687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 1049730 - 1049814
Alignment:
Q  99 aaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcacat 183  Q
    |||||| |||||||| || ||||||||||||||||| |||||||||||||| ||| ||| | |||||||||||||||||||||||    
T  1049730 aaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttgattttaagttaactctcacat 1049814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 22137025 - 22136878
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  |||||||||||||| |||| ||||| ||  ||||||    
T  22137025 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacct-ccatcgtgccgcgaagcccag 22136927  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |  ||||||||||| || || || ||||||||||||||||||||||||||    
T  22136926 ctgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 22136878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 40552052 - 40551905
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  |||||||||||||| |||| ||||| ||  ||||||    
T  40552052 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacct-ccatcgtgccgcgaagcccag 40551954  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |  ||||||||||| || || || ||||||||||||||||||||||||||    
T  40551953 ctgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 40551905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 40837144 - 40837261
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaa-cctg 162  Q
    ||||||||||||||    ||||||| ||||||| ||||||| |||||||| || ||||||||||| ||  |||||||||||||||| ||| |||| ||||    
T  40837144 ccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctcc-atcgtgccacgttgtccgaccatcgtgccacgatt-ctgcagaaacctg 40837241  T
Q  163 attttaagttaactctcaca 182  Q
    ||||||||||||||||||||    
T  40837242 attttaagttaactctcaca 40837261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 22108014 - 22107867
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  ||||||||||||||  ||| ||||| ||  ||||||    
T  22108014 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacct-gcatcgtgccgcgaagcccag 22107916  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |  ||||||||||| || || || ||||||||||||||||||||||||||    
T  22107915 ctgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 22107867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 40549774 - 40549627
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  ||||||||||||||  ||| ||||| ||  ||||||    
T  40549774 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacct-gcatcgtgccgcgaagcccag 40549676  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |  ||||||||||| || || || ||||||||||||||||||||||||||    
T  40549675 ctgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 40549627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 18290624 - 18290692
Alignment:
Q  180 acatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaa 248  Q
    |||| |||||||||||||||||||| || ||||||| |||||||||||| || ||||| | ||||||||    
T  18290624 acatattcaaaaaggttgattggtgttgatttcatgaagggaggtttatattcctttcatccatgagaa 18290692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 18289912 - 18289962
Alignment:
Q  199 ttggtggtggtttcatggagggaggtttatgtttctttctttcatgagaag 249  Q
    ||||||||  ||| |||||| |||||||||||| |||||||||||||||||    
T  18289912 ttggtggttatttaatggagtgaggtttatgttcctttctttcatgagaag 18289962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 22392340 - 22392292
Alignment:
Q  134 ccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    |||||||| ||||||||||  | ||||||||||||| ||||||||||||    
T  22392340 ccatcgtggcacgatttctccataacctgattttaaattaactctcaca 22392292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 48486281 - 48486113
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| |||||||||||||||||||||||| ||| ||| |||  | ||||||||||||||||||||||||||||||||||||||| || |||||||    
T  48486281 aatacgtttctgttattcgctgccagcgcaccattgtgccacattgtgaccccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaacctc 48486183  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || |||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  48486182 caatcgtgccacgttgctcagccatcgtgccacgatttctgcaggacctgattttaagttaactctcaca 48486113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 36919971 - 36920125
Alignment:
Q  26 tattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacg 125  Q
    ||||||||||||||||||||||||| |||| ||| | |||||||||||||||    ||||||||||||||||||||  | |||||||| || ||||||||    
T  36919971 tattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgacttgcctcaaaat-tgaaacctccaatcgtgccacg 36920069  T
Q  126 ttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  36920070 ttgcccagccatcgtgccacgattt-tgcagaacctgattttaagttaactctcaca 36920125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 619818 - 619987
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||||||||| ||||||||||||| ||| |||||||| | ||||||||||||||||||||||| ||||||||||| |||||| |||| ||    
T  619818 aatatgtttctgttattcgccgccagcgcaccattgtgccacgttgcgaccccatcgtgccacgaaaaatccaatgacttgcctc-aaaactgaaacatc 619916  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcacat 183  Q
    | |||||||||||||| ||  | ||||||| || ||| ||  | |||||||||||||||||||||||||||    
T  619917 caattgtgccacgttgaccttcaatcgtgcgacaattcctacataacctgattttaagttaactctcacat 619987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 36921866 - 36922034
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| |||||||||||||||  ||||||||||| |||  ||| | |||||||||||||||    |||||||||||||||||||| || |||||||    
T  36921866 aatacgtttctgttattcgctgccaatgcaccatcgtgccacaatgcgaccccatcgtgccacgatttttccagtgacttgcctcaaaa-ctgaaacctc 36921964  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcacat 183  Q
    | || |||||| |||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||    
T  36921965 caatcgtgccatgttgcccagccatcgtaccacgattt-tgcagaacctgattttaagttaactctcacat 36922034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 24880413 - 24880299
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||    
T  24880413 aatacgtttctgttattcgctgccagcgcaccatcgtgccacgttgcaatcccatcgtgccgcgaaaaatccagtgacttgcctc-aaaactgaaacctc 24880315  T
Q  113 ccattgtgccacgttg 128  Q
    |  | |||||||||||    
T  24880314 cattcgtgccacgttg 24880299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 31849970 - 31850138
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| ||||||||||||||||||||||| |||| ||| | |||||||||||| ||    ||||||| |||||| ||||| || |||||||    
T  31849970 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccaagatttttccagtgccttgccccaaaa-ctgaaacctc 31850068  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || ||||||||||||||||| |||||||||| ||| ||| ||| | ||||||||||||||||||||||    
T  31850069 caatcgtgccacgttgcccagcaatcgtgccacaattcctgcagatcttgattttaagttaactctcaca 31850138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 11006612 - 11006781
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| || |||||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||| ||||| | ||||||     
T  11006612 aatatgtttctgttttttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaattgaaacct- 11006710  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctg--tagaacctgattttaagttaactctcaca 182  Q
    |||| ||||||||||||||||| |||||||||||| |||||  || ||||||||||||||||||||||||||    
T  11006711 ccatcgtgccacgttgcccagcgatcgtgccacga-ttctgcataaaacctgattttaagttaactctcaca 11006781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 24878951 - 24878836
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||    
T  24878951 aatacgtttctgttattcgatgccagcgtaccatcgtgccacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcgtc-aaaactgaaacctc 24878853  T
Q  113 ccattgtgccacgttgc 129  Q
    | || ||||||||||||    
T  24878852 caatcgtgccacgttgc 24878836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 9176867 - 9177035
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| ||| ||||||||||||||||||| |||| ||  | |||||||||||||||    ||||||| ||||||| ||||||||||||||     
T  9176867 aatatgtttctgtttttccctgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacct- 9176965  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |||| ||||||||||||| | || ||||||||||| ||||| || ||||||||||||||||||||||||||    
T  9176966 ccatcgtgccacgttgcctaaccgtcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 9177035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 52942869 - 52943002
Alignment:
Q  43 ccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgc 142  Q
    |||||||| |||||||  | ||||||||||||||||| || |||||||||||||||||  || |||||||| || ||||||||||||||| |||||||||    
T  52942869 ccatcgtgccacgttgtgaccccatcgtgccacgaaatattcagtgacttgcctcaaag-ctgaaacctccaatcgtgccacgttgcccaaccatcgtgc 52942967  T
Q  143 cacgatttctgtagaacctgattttaagttaactc 177  Q
    |||||||| || | |||||||||||||||||||||    
T  52942968 cacgatttttgcaaaacctgattttaagttaactc 52943002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 9174517 - 9174684
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| ||| ||||||||||||||||||| |||| ||  | |||||||||||| ||    ||||||| ||||||| | ||||||||||||     
T  9174517 aatatgtttctgtttttccctgccagcgcaccatcgtgccacgatgagaccccatcgtgccatgatttttccagtgccttgcctaataaactaaaacct- 9174615  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    |||| |||| |||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  9174616 ccatcgtgctacgttgcctagccgtcgtgccacga-ttctgcagaacctgattttaagttaactctcaca 9174684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 51015208 - 51015042
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||||||||||||||||||||||||||| |||| ||| | ||||||||||||| |    ||||||| ||||||| ||||||| ||||||     
T  51015208 aatatgtttctgttattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacaatttttccagtgccttgcctaaaaaactgaaacct- 51015110  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctca 180  Q
    |||| |||||||||||||  |||||| |||||||| ||||| || || |||||||||||||||||||||    
T  51015109 ccatcgtgccacgttgccttgccatcatgccacga-ttctgcagaaatctgattttaagttaactctca 51015042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 16932213 - 16932360
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||  | |||||||||||||||    ||||||| ||||||  |||||||||||||||| || ||||||||||||||||    
T  16932213 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccag 16932311  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    || ||||||||||| ||||| || ||||||||||||||||||||||||||    
T  16932312 ccgtcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 16932360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 22044760 - 22044930
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaacta--aaacc 110  Q
    ||||||||| |||| ||| |||||||| |||||||||| |||| ||| |||||||||||||||||    ||||||| |||||||||||||  |  |||||    
T  22044760 aatatgtttctgtttttccctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgccttgcctcaaaaaaaatgaaacc 22044859  T
Q  111 tcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    ||| || ||||||||||||||  | |||||||||||||| ||| ||| | ||||||||||||||||||||||    
T  22044860 tcc-atcgtgccacgttgcccttcaatcgtgccacgattcctgcagatcttgattttaagttaactctcaca 22044930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 22803104 - 22803270
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| |||||||||||||||||||||||||||| |||| ||| | ||||||| |||||||    ||||||| ||| |||| |||||| |||||||    
T  22803104 aatacgtttttgttattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgagccacgatttttccagtgcctttcctc-aaaactgaaacctc 22803202  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctca 180  Q
    | || ||||||||||||||||||||||| |||||| |||| ||| ||  ||||||||||||||||||||    
T  22803203 caatcgtgccacgttgcccagccatcgtaccacga-ttctatagaaatttgattttaagttaactctca 22803270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 37089745 - 37089910
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| |||||||||| ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||  ||| |||||||||||| ||    
T  37089745 aatacgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctcacctaaaaaactaaaacatc 37089844  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactct 178  Q
     ||| |||||||||||||  ||||||||||||||| ||||| || || |||||||||||||||||||    
T  37089845 tcatcgtgccacgttgccttgccatcgtgccacga-ttctgcagaaatctgattttaagttaactct 37089910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 5637839 - 5638006
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| |||| |||||||||||| ||||||| || |||| ||| ||||||||||| || ||    ||||||| |||||||||||| || |||||||    
T  5637839 aatacgtttctgtttttcgctgccagctcaccatcatgccacgatgcgatcccatcgtgacatgatttttccagtgccttgcctcaaaa-ctgaaacctc 5637937  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    | || ||||||||||||||||| |||||||||||| ||| | || ||||||||||||||||||||||||||    
T  5637938 c-atcgtgccacgttgcccagcaatcgtgccacga-ttccgcagaaacctgattttaagttaactctcaca 5638006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 22783170 - 22783318
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||  | |||||||||||| ||    ||||||| ||||||  |||||||||||||||| || ||||||||||||||||    
T  22783170 gccagcgcaccatcgtgccacgatgagaccccatcgtgccatgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccag 22783268  T
Q  134 ccatcgtgccacgatttctgtagaa-cctgattttaagttaactctcacat 183  Q
    | ||||| |||||||| ||| |||| |||||||||||||||||||||||||    
T  22783269 ctatcgtaccacgatt-ctgcagaaacctgattttaagttaactctcacat 22783318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 24888758 - 24888594
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| |||||||||||| |||||||||| |||| ||| |||||||||||||||||    |||||||  ||||||| |||  | |||||||    
T  24888758 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 24888660  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactct 178  Q
    | || ||||||||||||| |||||||||||||| | ||||| || || |||||||||||||||||||    
T  24888659 caatcgtgccacgttgcctagccatcgtgccac-aattctgcagaaatctgattttaagttaactct 24888594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 183
Target Start/End: Original strand, 16934569 - 16934715
Alignment:
Q  36 cagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagcc 135  Q
    ||||||||||||||| || | ||  | |||||||||||||||    ||||||| ||||||  |||||||||||||||| || |||||| |||||||||||    
T  16934569 cagcgcaccatcgtgccaggatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccatgttgcccagcc 16934667  T
Q  136 atcgtgccacgatttctgtagaa-cctgattttaagttaactctcacat 183  Q
     ||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  16934668 gtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacat 16934715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 40091786 - 40091952
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| ||||| ||||||||||| ||| |||||||||||||||||||| | |||||| || |||||    |||| || ||| | |||||| || ||| |||    
T  40091786 aatacgtttacgttattcgctgtcagtgcaccatcgtgtcacgttgcgaccccatcatggcacgatttttccaatggcttacttcaaaa-ctgaaatctc 40091884  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctca 180  Q
    | || |||||||||| |||| ||| ||||||||||||  || ||||||||||||||||||||||||||    
T  40091885 caatcgtgccacgttacccaaccaccgtgccacgattattgcagaacctgattttaagttaactctca 40091952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 3824944 - 3825112
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| |||||||||  |||| |||||||||||| |||| ||| | ||||| |||||| ||    |||||||  ||||||||||| || |||||||    
T  3824944 aatacgtttctgttattcgtcgccaacgcaccatcgtgccacgatgcgaccccattgtgccatgatttttccagtgctttgcctcaaaa-ctgaaacctc 3825042  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    | || |||||| ||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||    
T  3825043 caatcgtgccatgttgcccagccatcgtgtcacga-ttctgcagaaacctgattttaagttaactctcaca 3825112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 7941233 - 7941133
Alignment:
Q  82 tccagtgacttgcctcaaaaa-ctaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctc 179  Q
    ||||||| ||||||||||||| || |||||||| || |||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||    
T  7941233 tccagtgccttgcctcaaaaaactgaaacctcc-atcgtgccacgttgcccagccatcgtgccacga-ttctgcagaaacctgattttaagttaactctc 7941136  T
Q  180 aca 182  Q
    |||    
T  7941135 aca 7941133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 22780805 - 22780952
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||  ||  | |||||||||||| ||    ||||||| ||||||  |||||||||||||||| || ||||||||||||||||    
T  22780805 gccagcgcaccatcgtgccacaatgagaccccatcgtgccatgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccag 22780903  T
Q  134 ccatcgtgccacgatttctgtagaa-cctgattttaagttaactctcaca 182  Q
    | ||||| |||||||| ||| |||| ||||||||||||||||||||||||    
T  22780904 ctatcgtaccacgatt-ctgcagaaacctgattttaagttaactctcaca 22780952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 11434887 - 11434769
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaa-ctaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacct 161  Q
    ||||||||||||||    ||||||| ||||||||||||| || |||||||| || ||||||||||||||||||||||| |||||| ||||| || |||||    
T  11434887 ccatcgtgccacgatttttccagtgtcttgcctcaaaaaactgaaacctcc-atcgtgccacgttgcccagccatcgtaccacga-ttctgcagaaacct 11434790  T
Q  162 gattttaagttaactctcaca 182  Q
    |||||||||||||||||||||    
T  11434789 gattttaagttaactctcaca 11434769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 5198382 - 5198217
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| ||||||||||||||||||||||| |||| ||  |||||||||||||||||    ||||| |  ||||||| |||  | ||| |||    
T  5198382 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgtgatcccatcgtgccacgatttttccagagctttgcctc-aaacttgaaatctc 5198284  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctc 179  Q
    | || ||||||||||||||||| ||| || || |||| ||| ||| | |||||||||||||||||||    
T  5198283 caatcgtgccacgttgcccagcaatcatgtcatgattcctgcagatcttgattttaagttaactctc 5198217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 38409161 - 38408993
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| ||||| |||| |||||||||||| |||| ||| | |||||||||||||||    |||||||  ||||||||||   | |||||||    
T  38409161 aatatgtttctgtttttcgccgccaacgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctcaaact-tgaaacctc 38409063  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    | || |||||||| |||||||| |||||||||||| ||||| || || || ||||||||||||||||||||    
T  38409062 caatcgtgccacgatgcccagcaatcgtgccacga-ttctgcagaaatctaattttaagttaactctcaca 38408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 9148192 - 9148054
Alignment:
Q  43 ccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgc 142  Q
    |||||||| |||| ||||| |||||||||||||||    |||||||  ||||||||||   | |||||||| || | ||||||||||||||| ||||| |    
T  9148192 ccatcgtgccacgatgcaaccccatcgtgccacgatttttccagtgctttgcctcaaact-tgaaacctccaatcgcgccacgttgcccagcaatcgtac 9148094  T
Q  143 cacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    ||||||| ||| ||| | ||||||||||||||||||||||    
T  9148093 cacgattcctgaagatcttgattttaagttaactctcaca 9148054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 18847093 - 18846923
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| ||| | || |||||||||||||| |||| ||| | |||||||| ||||||    ||||||  |||||||||||| || |||||||    
T  18847093 aatatgtttctgtttttccccgcgagcgcaccatcgtgccacgatgcgaccccatcgtaccacgatttttccagtaccttgcctcaaaa-ctgaaacctc 18846995  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaac---ctgattttaagttaactctcaca 182  Q
    | || |||||||| | |||| | |||||||||||||| ||| ||||    |||||||||||||||||||||||    
T  18846994 caatcgtgccacgattcccaacaatcgtgccacgatt-ctgcagaaaaatctgattttaagttaactctcaca 18846923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 47274689 - 47274634
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatc 68  Q
    |||| |||||||||||||||||||| |||||||||||| ||||||||||| |||||    
T  47274689 aatacgtttatgttattcgctgccatcgcaccatcgtgccacgttgcaattccatc 47274634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 52541043 - 52541113
Alignment:
Q  180 acatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    ||||||||||||| || | || |||||| ||||||||| | ||||||||||| ||||||||||||||||||    
T  52541043 acatgttcaaaaatgtgggttagtggtgatttcatggatgtaggtttatgttcctttctttcatgagaaga 52541113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 52942818 - 52942863
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttg 58  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||    
T  52942818 aatatgtttatgttattcgctgccagcgcatcatcgtgccacgttg 52942863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 314252 - 314184
Alignment:
Q  182 atgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    ||||| |||||||||| || ||| ||||||||| |||||| ||||||||||||||||  ||||||||||    
T  314252 atgtttaaaaaggttggttagtgatggtttcattgagggatgtttatgtttctttctcacatgagaaga 314184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 6560504 - 6560454
Alignment:
Q  199 ttggtggtggtttcatggagggaggtttatgtttctttctttcatgagaag 249  Q
    ||||||||| ||| ||||||| ||||||||||| |||||||||||||||||    
T  6560504 ttggtggtgatttaatggaggtaggtttatgttcctttctttcatgagaag 6560454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 13918912 - 13918862
Alignment:
Q  199 ttggtggtggtttcatggagggaggtttatgtttctttctttcatgagaag 249  Q
    ||||||||| ||| |||||||||| |||||||| |||||||||||||||||    
T  13918912 ttggtggtgatttaatggagggagatttatgttcctttctttcatgagaag 13918862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 22680616 - 22680681
Alignment:
Q  179 cacatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatga 245  Q
    ||||||||||||||||||| ||| || ||||||||||||||||| ||||||||  |||||| |||||    
T  22680616 cacatgttcaaaaaggttggttgatg-tggtttcatggagggagatttatgttcatttcttccatga 22680681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 158
Target Start/End: Original strand, 22801262 - 22801354
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaa 158  Q
    ||||||||||||||    ||||||  |||||||||||| || |||||||| || ||| ||||||||||| |||||||||||||| ||||||||||    
T  22801262 ccatcgtgccacgatttttccagttccttgcctcaaaa-ctgaaacctccaatcgtgtcacgttgcccaaccatcgtgccacga-ttctgtagaa 22801354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 11008963 - 11009052
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaa 102  Q
    ||||||||| |||| || |||||||| ||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||| |||||    
T  11008963 aatatgtttctgttttttgctgccagtgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaa 11009052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 22047055 - 22047116
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgcca 74  Q
    ||||||||| |||| ||| |||||||| |||||||||| |||| ||| ||||||||||||||    
T  22047055 aatatgtttctgtttttccctgccagcacaccatcgtgccacgatgcgatcccatcgtgcca 22047116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 22048492 - 22048575
Alignment:
Q  98 aaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    ||||||| |||||||| || ||||||||||||||  | ||||||||||||||  ||  || | ||||||||||||||||||||||    
T  22048492 aaaaactgaaacctcc-atcgtgccacgttgcccttcaatcgtgccacgattcttgcggatcttgattttaagttaactctcaca 22048575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 16631114 - 16631067
Alignment:
Q  136 atcgtgccacgatttctgtagaacctgattttaagttaactctcacat 183  Q
    |||||| |||||||| |  |||||||||||||||||||||||||||||    
T  16631114 atcgtggcacgatttttccagaacctgattttaagttaactctcacat 16631067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 6554464 - 6554402
Alignment:
Q  188 aaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    |||||||||  || ||| |||||| || |||||||||||||||||||||||  ||||||||||    
T  6554464 aaaaaggttagttagtgatggtttaattgagggaggtttatgtttctttctcacatgagaaga 6554402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 11434917 - 11434875
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacg 55  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||    
T  11434917 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacg 11434875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 14265789 - 14265837
Alignment:
Q  199 ttggtggtggtttcatggagggaggtttatgtttctttctttcatgaga 247  Q
    ||||||||||||| | || ||  ||||||||||||||||||||||||||    
T  14265789 ttggtggtggttttaaggtggtgggtttatgtttctttctttcatgaga 14265837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 21521066 - 21521234
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||    ||||||| ||||| |||||| || |||||||    
T  21521066 aatacgtttatgttattcgctgccagcgcaccatcgtgccacgttgcgatcccatcgtggcacgatttttccagtggcttgcttcaaaa-ctgaaacctc 21521164  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21521165 caatcgtgccacgttgcccagccatcgtgccacgattcctgtagaacctgattttaagttaactctcaca 21521234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 6259186 - 6259351
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||||||| | |||||||||||||||||||||||||| |||||||||||||||||    ||||||||||| |||||||| || |||| ||    
T  6259186 aatatgtttctgttattcaccgccagcgcaccatcgtgtcacgttgcgatcccatcgtgccacgatttttccagtgactttcctcaaaa-ctgaaacatc 6259284  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctc 179  Q
    | || |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6259285 caatagtgccacgttgcacagccatcgtgccacgatttctgcagaacctgattttaagttaactctc 6259351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 40032429 - 40032586
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| |||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||| ||||||| || |||||||    
T  40032429 aatacgtttctgttattcgctgccagcgcaccatcgt-----------atcccatcgtgccacgaaaaatccagtgacttgtctcaaaa-ctgaaacctc 40032516  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40032517 caatcgtgccacgttgcccagccatcgtgccacgatttctgcagaacctgattttaagttaactctcaca 40032586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 27104683 - 27104519
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||||||||||||| ||| ||||||||||||||||||| |||| ||| |||||||||||||||||    ||||||| ||||||||||||||| ||||||     
T  27104683 aatatgtttatgtttttccctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacct- 27104585  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactct 178  Q
    |||| ||||||||||||||  | |||||||||||| ||||| || || |||||||||||||||||||    
T  27104584 ccatcgtgccacgttgcccttcaatcgtgccacga-ttctgcagaaatctgattttaagttaactct 27104519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 19502382 - 19502550
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||||||||  ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||| ||||||| ||||||     
T  19502382 aatatgtttctgttattcgtcgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacct- 19502480  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |||| |||||||||||||  ||||||||||||||| ||||| || |||||||||||||||||||| |||||    
T  19502481 ccatcgtgccacgttgccttgccatcgtgccacga-ttctgcagaaacctgattttaagttaactatcaca 19502550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 42064399 - 42064231
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| ||||||||||||||||||||||| |||| ||  |||||||||||||||||    |||||||  ||||||||||   | |||||||    
T  42064399 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgtgatcccatcgtgccacgatttttccagtgctttgcctcaaact-tgaaacctc 42064301  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    |  | || |||||||||||||| |||||||||||||| ||| ||| | ||||||||||||||||||||||    
T  42064300 cagtcgtaccacgttgcccagcaatcgtgccacgattcctgcagatcttgattttaagttaactctcaca 42064231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 19504720 - 19504886
Alignment:
Q  17 tgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccat 116  Q
    ||||| |||||||||  ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||| ||||| |||||||| ||||    
T  19504720 tgtttctgttattcgtcgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaattaaaacct-ccat 19504818  T
Q  117 tgtgccacgttgcccagccatcgtgccacgatttctg-tagaacctgattttaagttaactctcacatg 184  Q
     |||||||||||||  |||||||||||| || ||||| |  |||||||||||||||||||| |||||||    
T  19504819 cgtgccacgttgccttgccatcgtgccatga-ttctgctgaaacctgattttaagttaactttcacatg 19504886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 24162596 - 24162752
Alignment:
Q  26 tattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctc-aaaaactaaaacctcccattgtgccac 124  Q
    ||||||| |||||||||| |||||| |||| ||| | |||||||||||||||    ||||||| |||||||| ||||||| |||||| |||| |||||||    
T  24162596 tattcgcagccagcgcacaatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacct-ccatcgtgccac 24162694  T
Q  125 gttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |||||||| |||| ||||||||| ||||| || ||| ||||||||||||||||||||||    
T  24162695 gttgcccaaccattgtgccacga-ttctgcagaaacttgattttaagttaactctcaca 24162752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 22407780 - 22407948
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| ||||||||||||||| |||||||||||| |||||||  ||||||||||||||| |    | || ||||||||||| |||||| |||| ||    
T  22407780 aatacgtttctgttattcgctgccaacgcaccatcgtgccacgttgtgatcccatcgtgccacaattttttcactgacttgcctc-aaaactgaaacatc 22407878  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || |||||| ||| |||  | |||||||||||||| ||| ||||||| ||||||| ||||||||||||    
T  22407879 caatcgtgccatgttacccttcaatcgtgccacgattcctgcagaacctaattttaaattaactctcaca 22407948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 6264546 - 6264658
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctga 163  Q
    ||||||||||||||    |||||||||||||||||||| || |||| ||| ||  |||||||||||||| ||||||||| || ||||||| |||||||||    
T  6264546 ccatcgtgccacgatttttccagtgacttgcctcaaaa-ctgaaacatccaatcatgccacgttgcccaaccatcgtgcaacaatttctgcagaacctga 6264644  T
Q  164 ttttaagttaactc 177  Q
    ||||||||||||||    
T  6264645 ttttaagttaactc 6264658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 36559211 - 36559358
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  |||||||||||||| |||| ||||| ||  ||||||    
T  36559211 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacct-ccatcgtgccgcgaagcccag 36559309  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    || ||||||||||| || || || ||||||||||||||||||||||||||    
T  36559310 ccgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 36559358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 45332528 - 45332675
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||  | |||||||| ||||||    ||||||  ||||||  |||||||||||||||| || ||||| ||  ||||||    
T  45332528 gccagcgcaccatcgtgccacgatgtgaccccatcgttccacgatttttccagttccttgcccaaaaaactaaaacctcc-atcgtgccgcgaagcccag 45332626  T
Q  134 ccatcgtgccacgatttctgtagaa-cctgattttaagttaactctcaca 182  Q
    || ||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  45332627 ccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 45332675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 43623988 - 43624085
Alignment:
Q  84 cagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    ||||| |||||||||||| || |||||||| || |||||| |||||||||||||||||||| || ||||| || |||||||||||||||||||| |||||    
T  43623988 cagtgccttgcctcaaaa-ctgaaacctccaatcgtgccatgttgcccagccatcgtgccatga-ttctgcagaaacctgattttaagttaactttcaca 43624085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 14905057 - 14904988
Alignment:
Q  183 tgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaagaat 252  Q
    |||||||||||| || |||||||||||||| ||||| |||||||||| | |||||||||| |||||||||    
T  14905057 tgttcaaaaaggctggttggtggtggtttcgtggagtgaggtttatgctcctttctttcacgagaagaat 14904988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 18800720 - 18800819
Alignment:
Q  82 tccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcac 181  Q
    ||||||||||||| ||| || || |||| ||| || ||| ||||||||||| | | |||||||||||||||  ||||| |||||||||||||||||||||    
T  18800720 tccagtgacttgcttcataa-ctgaaacatccaatcgtgtcacgttgcccaacaaacgtgccacgatttctccagaacatgattttaagttaactctcac 18800818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 31965998 - 31966066
Alignment:
Q  182 atgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    ||||| |||||||||| || ||| ||||||||| |||||||||||||||||||||||  ||||||||||    
T  31965998 atgtttaaaaaggttggttagtgatggtttcattgagggaggtttatgtttctttctcacatgagaaga 31966066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 182
Target Start/End: Original strand, 36561539 - 36561677
Alignment:
Q  43 ccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgc 142  Q
    |||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  |||||||||||||||| || |||||  |  |||||||| ||||||    
T  36561539 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccgtgaagcccagccgtcgtgc 36561637  T
Q  143 cacgatttctgtagaa-cctgattttaagttaactctcaca 182  Q
    |||||||  || |||| ||||||||||||||||||||||||    
T  36561638 cacgattg-tgcagaaacctgattttaagttaactctcaca 36561677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 13910415 - 13910479
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacga 77  Q
    ||||||||| |||| ||||||||||||||||||||||| |||  ||| | |||||||||||||||    
T  13910415 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacaatgcgaccccatcgtgccacga 13910479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 20106816 - 20106880
Alignment:
Q  184 gttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaa 248  Q
    ||||||||||||||||||||| || ||||||| |||||||||||| || ||||| | ||||||||    
T  20106816 gttcaaaaaggttgattggtgatgatttcatgaagggaggtttatattcctttcatccatgagaa 20106880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 6910293 - 6910223
Alignment:
Q  179 cacatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    ||||||||||||||||||| ||||| ||| ||| ||||| |||| |||||||| ||||||| ||||||||||    
T  6910293 cacatgttcaaaaaggttggttggt-gtgatttgatggacggagatttatgttcctttcttccatgagaaga 6910223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 17682541 - 17682612
Alignment:
Q  179 cacatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    |||||||||| |||||||| ||||||||| |||  || ||| || ||||||||  |||||||||||||||||    
T  17682541 cacatgttcataaaggttggttggtggtgattttctgaaggaagatttatgttcatttctttcatgagaaga 17682612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 22287717 - 22287764
Alignment:
Q  23 tgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgt 70  Q
    |||||||||||||||||||||||| ||| |||||| | ||||||||||    
T  22287717 tgttattcgctgccagcgcaccatggtgccacgttacgatcccatcgt 22287764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 27879752 - 27879682
Alignment:
Q  180 acatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    ||||||||||||||||   ||| | ||| | |||| |||||||||||||||  ||||||||||||||||||    
T  27879752 acatgttcaaaaaggtgagttgattgtgatatcatagagggaggtttatgtacctttctttcatgagaaga 27879682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 43623938 - 43623980
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacg 55  Q
    |||| |||||||||||| |||||||||||||||||||| ||||    
T  43623938 aatacgtttatgttatttgctgccagcgcaccatcgtgccacg 43623980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 5202226 - 5202158
Alignment:
Q  180 acatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaa 248  Q
    ||||||||||||| || | ||||||||| ||||| |||   ||||||||||| |||| |||||||||||    
T  5202226 acatgttcaaaaatgtgggttggtggtgatttcacggatttaggtttatgttcctttatttcatgagaa 5202158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 39462426 - 39462254
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| |||||||| |||| |||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||    
T  39462426 aatacgtttctgttattcactgcaagcgcaccatcgtgccacattgcaatcccatcgtgccacgaaaaatccactgacttgcctc-aaaactgaaacctc 39462328  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcacatgtt 186  Q
      || ||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  39462327 taatcgtgccacgttgcccaaccattgtgtcacgatttctgcagaacctgattttaagttaactctcacatgtt 39462254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 13214989 - 13214834
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| ||||||| ||||||| | |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||    
T  13214989 aatacgtttttgttatttgctgccaacacaccatcgtgccacgttgcaatcccatcatgccacgaaaaatccagtgacttgcctc-aaaactgaaacctc 13214891  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaa 169  Q
    | || ||||||||||||||| ||||||||||||||||| || | |||||||||||||    
T  13214890 caatcgtgccacgttgcccaaccatcgtgccacgatttttgcataacctgattttaa 13214834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 49687418 - 49687301
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctga 163  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| |||||||||||||  | |||||||    
T  49687418 ccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaacctccaattgtgccacgttgcccagccatcatgccacgatttctacataacctga 49687320  T
Q  164 ttttaagttaactctcaca 182  Q
    |||||||||||||||||||    
T  49687319 ttttaagttaactctcaca 49687301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 15823454 - 15823283
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| ||||||| ||||| |||||||||||||| |||| ||| | |||||||||||||||    || ||||  ||||||||||   | |||||||    
T  15823454 aatatgtttctgttatttgctgctagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttctagtgctttgcctcaaact-tgaaacctc 15823356  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcacatgt 185  Q
    | || |||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  15823355 caatcgtgccacgttgcccagccatcgtgccacgattcctgcagatcctgattttaagttaactctcacatgt 15823283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 51752273 - 51752104
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctc-aaaaactaaaacct 111  Q
    |||| ||||||||||||||| ||||||||||||||||| |||| |||   |||||||||||||||    ||||||| |||||||| ||||||| ||||||    
T  51752273 aatacgtttatgttattcgccgccagcgcaccatcgtgccacgatgcggccccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacct 51752174  T
Q  112 cccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
     |||| ||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||    
T  51752173 -ccatcgtgccacgttgcccaaccatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 51752104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 13761745 - 13761577
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| |||||||||| |||||| |||||||||| | || ||| | |||||||||||||||    ||||||| ||||||||||||||| |||||||    
T  13761745 aatacgtttctgttattcgccgccagcacaccatcgtgccgcgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 13761646  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    | ||  ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||    
T  13761645 c-atcatgccacgttgcccagccatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 13761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 3579991 - 3580159
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| ||||||| ||||||| ||||||||||||||||| ||||||||||||||| ||| ||||||    |||| |||||||||||| || || |||| ||    
T  3579991 aatacgtttatgatattcgccgccagcgcaccatcgtgccacgttgcaatcccaccgtaccacgatttttccaatgacttgcctcataa-ctgaaacatc 3580089  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | |||||| |||||||||| || |||||||||||||| ||| | ||||||||||||||||||||| ||||    
T  3580090 caattgtgtcacgttgccctgcaatcgtgccacgattcctgcataacctgattttaagttaactcccaca 3580159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 28840586 - 28840418
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| |||||||||||| |||||||||| |||| ||| ||||||||||||||| |    ||||||  ||||||| ||||||| |||||||    
T  28840586 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacaatttttccagtaccttgcct-aaaaactgaaacctc 28840488  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || |||||||||||||  ||||||||||||||||| ||| ||| |||||||||||||||||| |||||    
T  28840487 caatcgtgccacgttgccttgccatcgtgccacgattcctgcagatcctgattttaagttaactttcaca 28840418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 38925880 - 38925996
Alignment:
Q  63 cccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctg 162  Q
    ||||||||||||| ||||||||||| ||||| ||||||| || |||||||| || ||||||||||||||||||||||| ||||||||||||  |||||||    
T  38925880 cccatcgtgccacaaaaaatccagtaacttgtctcaaaa-ctgaaacctccaatcgtgccacgttgcccagccatcgtaccacgatttctgcggaacctg 38925978  T
Q  163 attttaagttaactctca 180  Q
    ||||||||||||||||||    
T  38925979 attttaagttaactctca 38925996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 41646828 - 41646740
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaa 101  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41646828 aatatgtttctgttattcgctgccagtgcaccatcgtgccacgttgcaatcccaccgtgccacgaaaaatccagtgacttgcctcaaaa 41646740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 10400201 - 10400369
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||||||||||| |||||||||||||||||||| |||| ||| | ||||||||||||||| |  |||||||  ||||||| |||  | |||||||    
T  10400201 aatacgtttatgttatttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatatttccagtgctttgcctc-aaacttgaaacctc 10400299  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    | || ||||||||||||||||| |||||||||||| ||| | || ||||||||||||||||||||||||||    
T  10400300 caatcgtgccacgttgcccagcaatcgtgccacga-ttccgcagaaacctgattttaagttaactctcaca 10400369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 28842401 - 28842233
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| |||||||||||  |||||||||| |||| ||| |||||||||||||||||    ||||||  ||||||| ||||||| |||||||    
T  28842401 aatatgtttctgtttttcgctgccaggacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtaccttgcct-aaaaactgaaacctc 28842303  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || ||||||||| |||  ||||||||||||||||| ||  ||| |||||||||||||||||| |||||    
T  28842302 caatcgtgccacgtagccttgccatcgtgccacgattcctacagatcctgattttaagttaactttcaca 28842233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 51749947 - 51749778
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctc-aaaaactaaaacct 111  Q
    |||| |||| |||||||||| |||||||||| |||||| |||| ||| | |||||||||||||||    ||||||| |||||||| ||||||| ||||||    
T  51749947 aatacgtttctgttattcgccgccagcgcactatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacct 51749848  T
Q  112 cccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
     |||| || |||||||||||| |||||||||||||| ||||| || ||| ||||||||||||||||||||||    
T  51749847 -ccatcgtaccacgttgcccaaccatcgtgccacga-ttctgcagaaacttgattttaagttaactctcaca 51749778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 16226034 - 16225891
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  |||||||||||||| |||| |||||||||||||||     
T  16226034 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacct-ccatcgtgccacgttgcccaa 16225936  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactct 178  Q
    || ||||||||||| ||||| || ||||||||||||||||||||||    
T  16225935 ccgtcgtgccacga-ttctgcagaaacctgattttaagttaactct 16225891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 47177224 - 47177078
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||  | |||||||||||||||    ||||||| |||||| ||||||||||||||||| || ||||||||||||||||    
T  47177224 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgtcttgcc-caaaaactaaaacctcc-atcgtgccacgttgcccag 47177127  T
Q  134 ccatcgtgccacgatttctgtagaa-cctgattttaagttaactctcaca 182  Q
     | ||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  47177126 tcgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 47177078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 20302367 - 20302198
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctc-aaaaactaaaacct 111  Q
    ||||||||| |||||||||| ||||||||||||||||| |||| ||| | ||||||||||||| |    ||||||| |||||||| ||||||| ||||||    
T  20302367 aatatgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacaatttttccagtgccttgcctcaaaaaactgaaacct 20302268  T
Q  112 cccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
     |||| |||||||||||||  |||||| |||| ||| ||||| || || |||||||||||||||||||||||    
T  20302267 -ccatcgtgccacgttgccttgccatcatgccgcga-ttctgcagaaatctgattttaagttaactctcaca 20302198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 182
Target Start/End: Complemental strand, 47179572 - 47179428
Alignment:
Q  37 agcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagcca 136  Q
    |||||||||||||| |||| ||  | |||||||||||||||    | ||||| ||||||  |||||||||||||||| || ||||||||||||||||||     
T  47179572 agcgcaccatcgtgccacgatgagaccccatcgtgccacgattttttcagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccagccg 47179474  T
Q  137 tcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||||    
T  47179473 tcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 47179428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 6823792 - 6823656
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctc-aaaaactaaaacct 111  Q
    |||| ||||||||||||||| ||||||||||||||||| |||| ||| | |||||| ||||||||    ||||||| |||||||| ||||||| ||||||    
T  6823792 aatacgtttatgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcatgccacgatttttccagtgccttgcctcaaaaaactgaaacct 6823693  T
Q  112 cccattgtgccacgttgcccagccatcgtgccacgatt 149  Q
     |||| ||||||||||||||| ||||||||||| ||||    
T  6823692 -ccatcgtgccacgttgcccaaccatcgtgccatgatt 6823656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 6822893 - 6822775
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaa-ctaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacct 161  Q
    ||||||||||||||    ||||||| ||||||||||||| || |||||||| || |||||||||||||||||||||||||||||| ||||| || |||||    
T  6822893 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctcc-atcgtgccacgttgcccagccatcgtgccacga-ttctgcagaaacct 6822796  T
Q  162 gattttaagttaactctcaca 182  Q
    |||||||||||||||||||||    
T  6822795 gattttaagttaactctcaca 6822775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 28207444 - 28207526
Alignment:
Q  18 gtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaa 100  Q
    ||||||||||||||| ||||||||||||||||| |||||||  | |||||||||||| |||||||||| ||||||||||||||    
T  28207444 gtttatgttattcgccgccagcgcaccatcgtgccacgttgtgaccccatcgtgccatgaaaaatccaatgacttgcctcaaa 28207526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 47451488 - 47451405
Alignment:
Q  99 aaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    |||||| |||||||| || ||||||| |||||||||||||||||||||||||||| | || ||||||| |||||||||||||||    
T  47451488 aaaactgaaacctccaatcgtgccacattgcccagccatcgtgccacgatttctgcaaaatctgatttgaagttaactctcaca 47451405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 14098441 - 14098510
Alignment:
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    |||| |||||||| ||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  14098441 ccatcgtgccacggtgctcagccatcgtgccacgatttctgcagaatctgattttaagttaactctcaca 14098510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 30790767 - 30790935
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| ||||||||| ||| |  |||||||||||||||| ||| |||| ||||||||||||||||     ||||||||||||| || | |||| |||| ||    
T  30790767 aatacgtttatgtttttcccctccagcgcaccatcgtgccacattgcgatcccatcgtgccacgttttttccagtgacttgcttc-ataactgaaacatc 30790865  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || ||||||| |||| | || | |||| ||||||||||  |||||||| |||||||||| ||||||||    
T  30790866 caatcgtgccacattgctctgcaaacgtgtcacgatttctccagaacctggttttaagttagctctcaca 30790935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 16231458 - 16231374
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatt 149  Q
    ||||||||||||||    ||||||| ||||||  |||||||||||||||| || |||||||||||||||||| |||||||||||||    
T  16231458 ccatcgtgccacgatttttccagtgtcttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccagccgtcgtgccacgatt 16231374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 23783376 - 23783238
Alignment:
Q  43 ccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgc 142  Q
    |||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  |||||||||||||||| || ||||| ||  |||||||  ||||||    
T  23783376 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccgcgaagcccagctgtcgtgc 23783278  T
Q  143 cacgatttctgtagaa-cctgattttaagttaactctcaca 182  Q
    |||||||  || |||| ||||||||||||||||||||||||    
T  23783277 cacgattg-tgcagaaacctgattttaagttaactctcaca 23783238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 41646727 - 41646679
Alignment:
Q  136 atcgtgccacgatttctgtagaacctgattttaagttaactctcacatg 184  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  41646727 atcgtgccacgatttctgcagaacatgattttaagttaactctcacatg 41646679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 14098372 - 14098453
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacg 146  Q
    ||||||||| ||||||||||||||||||||| || ||| || |||||||| || |||||||| ||| || |||||||||||||    
T  14098372 ccatcgtgcaacgaaaaatccagtgacttgcgtc-aaagctgaaacctccaatcgtgccacggtgctcaaccatcgtgccacg 14098453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 28207540 - 28207581
Alignment:
Q  136 atcgtgccacgatttctgtagaacctgattttaagttaactc 177  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  28207540 atcgtgccacgatttctgcagaacctgattttaagttaactc 28207581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 20291380 - 20291279
Alignment:
Q  82 tccagtgacttgcctcaaaaa-ctaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaac-ctgattttaagttaactctc 179  Q
    ||||||| | ||||||||||| || |||||||| |  |||||||||||||  ||||||||||||||||| ||| ||||  ||||||||||||||||||||    
T  20291380 tccagtgccatgcctcaaaaaactgaaacctcc-accgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaatctgattttaagttaactctc 20291283  T
Q  180 acat 183  Q
    ||||    
T  20291282 acat 20291279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 13461344 - 13461393
Alignment:
Q  134 ccatcgtgccacgatttctgtagaacctgattttaagttaactctcacat 183  Q
    |||||||| ||||||| ||| ||| |||||||||||||||||||||||||    
T  13461344 ccatcgtggcacgattcctgcagatcctgattttaagttaactctcacat 13461393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 14098342 - 14098379
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtg 50  Q
    |||| |||||||||||||||||||||||||||||||||    
T  14098342 aatacgtttatgttattcgctgccagcgcaccatcgtg 14098379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 45918385 - 45918453
Alignment:
Q  182 atgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    ||||| |||||||||  || ||| ||||||||| |||||||||||||||| ||||||  ||||||||||    
T  45918385 atgtttaaaaaggttagttagtgatggtttcattgagggaggtttatgttcctttctcacatgagaaga 45918453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 3836168 - 3836237
Alignment:
Q  180 acatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaag 249  Q
    |||||||||||||  | | || |||||| ||||||||| | ||||| ||||| |||||||||||||||||    
T  3836168 acatgttcaaaaatatgggttagtggtgatttcatggatgtaggttgatgttcctttctttcatgagaag 3836237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 49687448 - 49687411
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtg 50  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  49687448 aatacgtttatgttattcgctgtcagcgcaccatcgtg 49687411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 49881715 - 49881658
Alignment:
Q  193 ggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    ||||| || ||||||||||||| || ||||||||||||| ||||||  ||||||||||    
T  49881715 ggttggttagtggtggtttcattgaaggaggtttatgttcctttctcacatgagaaga 49881658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 14936 - 14768
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||  |||||||||||||||| | |||| |||| ||    
T  14936 aatatgtttctgttattcgctgccagcgcaccatcgtgtcacgttgtgatcccatcgtgccacgaaatttccagtgacttgcctc-ataactgaaacttc 14838  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaa-cctgattttaagttaactctcac 181  Q
    |||| || |||||||||||  | |||||||||||||| ||| |||| |||||||||||||||||||||||    
T  14837 ccatcgttccacgttgcccttcaatcgtgccacgattcctgcagaatcctgattttaagttaactctcac 14768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 27829261 - 27829093
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||    |||||||  |||||||||||| | |||||||    
T  27829261 aatatgtttttgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgttttgcctcaaaaaatgaaacctc 27829162  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || ||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  27829161 c-atcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 27829093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 27826950 - 27826782
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||    |||||||  |||| ||||||| | |||||||    
T  27826950 aatatgtttttgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcttcaaaaaatgaaacctc 27826851  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || ||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  27826850 c-atcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 27826782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 12517397 - 12517566
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| |||||||||||| |||||||||| |||| ||| |||||||||||||||||    ||||||   ||||||||||| || |||||||    
T  12517397 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtacattgcctcaaaa-ctgaaacctc 12517495  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcacat 183  Q
    | || |||||||||||||  ||||||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  12517496 caatcgtgccacgttgccttgccatcgtgccacgattcctgcagatcctgattttaagttaactctcacat 12517566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 15072674 - 15072506
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| ||||||||||||||||||||||||| || |||||||| ||||||||||| |||||    || |||| ||||| |||||| || |||||||    
T  15072674 aatacgtttctgttattcgctgccagcgcaccatcatgccacgttgcgatcccatcgtgacacgatttttctagtggcttgcttcaaaa-ctgaaacctc 15072576  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || ||| |||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||    
T  15072575 caatcgtgtcacgttgcccagccatcgtgtcacgattcctgcagaatctgattttaagttaactctcaca 15072506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 15067945 - 15067777
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| |||||||||||||||||||||||||||| |||||||| ||||||||||| || ||    ||||||| ||||| |||||| || |||||||    
T  15067945 aatacgtttttgttattcgctgccagcgcaccatcgtgccacgttgcgatcccatcgtggcatgatttttccagtggcttgcttcaaaa-ctgaaacctc 15067847  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || |||||| |||||||||||||| |||||||||| ||| | || |||||||||||||||| ||||||    
T  15067846 caatcgtgccatgttgcccagccatcttgccacgattcctgcaaaatctgattttaagttaacactcaca 15067777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 18812815 - 18812668
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||| |||||||||||||||| || ||||||||||||||||    
T  18812815 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctcc-atcgtgccacgttgcccag 18812717  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    || ||||||||||| ||||  || ||||||||||||||||||||||||||    
T  18812716 ccgtcgtgccacga-ttcttcagaaacctgattttaagttaactctcaca 18812668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 18810630 - 18810483
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||  | ||||||||||| | |    ||||||| ||||||| ||||| |||||||||| || ||||||||||||||||    
T  18810630 gccagcgcaccatcgtgccacgatgtgaccccatcgtgccgcaatttttccagtgccttgcctaaaaaaataaaacctcc-atcgtgccacgttgcccag 18810532  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    || ||||||||||| ||||| || ||||||||||||||||||||||||||    
T  18810531 ccgtcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 18810483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 4423952 - 4423834
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctga 163  Q
    ||||||||||||||    ||||||| ||||||| |||| || |||||||| |||||||||||||||||||| || ||||||||||| ||| ||| | |||    
T  4423952 ccatcgtgccacgatttttccagtgccttgccttaaaa-ctgaaacctccaattgtgccacgttgcccagcaattgtgccacgattcctgcagatcttga 4423854  T
Q  164 ttttaagttaactctcacat 183  Q
    ||||||||||||||||||||    
T  4423853 ttttaagttaactctcacat 4423834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 188
Target Start/End: Complemental strand, 43079494 - 43079341
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||  | |||||||| ||||||    ||||||| ||||||  |||||||||||||||| || |||||||||||||  |    
T  43079494 gccagcgcaccatcgtgccacgatgagaccccatcgtaccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgccttg 43079396  T
Q  134 ccatcgtgccacgatttctgtagaa-cctgattttaagttaactctcacatgttca 188  Q
    || ||||||||||||| ||| |||| |||||||||||||||||||||||| |||||    
T  43079395 ccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaagttca 43079341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 14807716 - 14807552
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| ||||||||| |||||||||||||||||| |||| |||| ||| | |||||||||||||||    |||||||  ||||||| |||  | |||||||    
T  14807716 aatacgtttatgtttttcgctgccagcgcaccaccgtgccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 14807618  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactct 178  Q
    | || ||| ||||||||||| ||||| |||||||| ||||| || ||||||||||||||||||||||    
T  14807617 caatcgtgtcacgttgcccaaccatcatgccacga-ttctgcagaaacctgattttaagttaactct 14807552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 44720785 - 44720617
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| || |||||||||||||||||||| |||| ||| | |||||||||||||||    ||||||  |||||||| |||||| |||||||    
T  44720785 aatatgtttctgttttt-gctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtaccttgcctc-aaaactgaaacctc 44720688  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag--aacctgattttaagttaactctcaca 182  Q
    | |  |||||||  |||||||| ||| |||||||| ||||| ||  ||||||||||||||||||||||||||    
T  44720687 caaacgtgccacaatgcccagcaatcatgccacga-ttctgcagaaaacctgattttaagttaactctcaca 44720617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 28251988 - 28252122
Alignment:
Q  43 ccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgc 142  Q
    |||||||| |||| ||| |||||||||||||||||    |||||||  ||||||||||   | |||||||| || || |||||||||| |||||||||||    
T  28251988 ccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcctcaaact-tgaaacctccaatcgtaccacgttgcctagccatcgtgc 28252086  T
Q  143 cacgatttctgtagaacctgattttaagttaactct 178  Q
    ||||||| ||| ||| ||||||||||||||||||||    
T  28252087 cacgattcctgcagatcctgattttaagttaactct 28252122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 43081869 - 43081722
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||| ||||||||| |||| ||  | |||||||||||||||    ||||||| ||||||  |||||||||||||||| || ||||||| |||||  |    
T  43081869 gccagcgtaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccactttgccttg 43081771  T
Q  134 ccatcgtgccacgatttctgtagaa-cctgattttaagttaactctcaca 182  Q
    || ||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  43081770 ccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 43081722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 41527193 - 41527255
Alignment:
Q  188 aaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    |||||||||| |||||| ||||||||| |||||||||||||||||||||||  ||||||||||    
T  41527193 aaaaaggttggttggtgatggtttcattgagggaggtttatgtttctttctcacatgagaaga 41527255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 40262536 - 40262467
Alignment:
Q  180 acatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaag 249  Q
    ||||||||||||| || | || |||||| ||||||||| | |||||||||||||||||||||||||||||    
T  40262536 acatgttcaaaaatgtgggttagtggtgatttcatggatgtaggtttatgtttctttctttcatgagaag 40262467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 12157178 - 12157113
Alignment:
Q  179 cacatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatga 245  Q
    ||||||||||||||||||| || ||| ||||||||||||||||| |||||||| ||||||| |||||    
T  12157178 cacatgttcaaaaaggttggttagtg-tggtttcatggagggagatttatgttcctttcttccatga 12157113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 17887977 - 17887910
Alignment:
Q  181 catgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaa 248  Q
    |||||| ||||| |||||||||||||| ||||||| |||||||||||| || ||||| | ||||||||    
T  17887977 catgtttaaaaaagttgattggtggtgatttcatgaagggaggtttatattcctttcatccatgagaa 17887910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 15342449 - 15342518
Alignment:
Q  180 acatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    |||| ||||||||| ||| |||||||||||||  ||||||| ||||||| || ||||||||||||||||||    
T  15342449 acatattcaaaaag-ttggttggtggtggttttgtggaggggggtttattttcctttctttcatgagaaga 15342518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 15431514 - 15431583
Alignment:
Q  180 acatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    |||| ||||||||| ||| |||||||||||||  ||||||| ||||||| || ||||||||||||||||||    
T  15431514 acatattcaaaaag-ttggttggtggtggttttgtggaggggggtttattttcctttctttcatgagaaga 15431583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 15522818 - 15522887
Alignment:
Q  180 acatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    |||| ||||||||| ||| |||||||||||||  ||||||| ||||||| || ||||||||||||||||||    
T  15522818 acatattcaaaaag-ttggttggtggtggttttgtggaggggggtttattttcctttctttcatgagaaga 15522887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 8358955 - 8359023
Alignment:
Q  180 acatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaa 248  Q
    ||||||||||||| |||||||| ||||| ||||||| ||||| |||||| || ||||| | ||||||||    
T  8358955 acatgttcaaaaaagttgattgatggtgatttcatgaagggatgtttatattcctttcatccatgagaa 8359023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 28251937 - 28252001
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacga 77  Q
    |||| |||| |||| |||||||||| |||||||||||  |||| ||| |||||||||||||||||    
T  28251937 aatacgtttctgtttttcgctgccaacgcaccatcgtaccacgatgcgatcccatcgtgccacga 28252001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 8358199 - 8358249
Alignment:
Q  199 ttggtggtggtttcatggagggaggtttatgtttctttctttcatgagaag 249  Q
    ||||||||| ||| | ||| ||||||||||||| |||||||||||||||||    
T  8358199 ttggtggtgatttaacggatggaggtttatgttcctttctttcatgagaag 8358249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 12159928 - 12159878
Alignment:
Q  181 catgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtt 231  Q
    ||||||||||||||||| ||||||||||||||||  |||| | ||||||||    
T  12159928 catgttcaaaaaggttggttggtggtggtttcatatagggcgatttatgtt 12159878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 25087771 - 25087837
Alignment:
Q  182 atgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaa 248  Q
    ||||||||||| ||| |||||||||| ||||||| ||||| |||||| || ||||| | ||||||||    
T  25087771 atgttcaaaaaagttaattggtggtgatttcatgaagggatgtttatattcctttcatccatgagaa 25087837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 19220815 - 19220848
Alignment:
Q  181 catgttcaaaaaggttgattggtggtggtttcat 214  Q
    ||||||||||||||||| ||||||||||||||||    
T  19220815 catgttcaaaaaggttggttggtggtggtttcat 19220848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 3886292 - 3886328
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgt 49  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  3886292 aatatgtttctgttattcgctgccagcacaccatcgt 3886328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 3886340 - 3886407
Alignment:
Q  82 tccagtgacttgcctcaaaaa-ctaaaacctcccattgtgccacgttgcccagccatcgtgccacgatt 149  Q
    ||||||| ||||||||||||| || |||||||| || ||||||||||| ||||||||| || |||||||    
T  3886340 tccagtgtcttgcctcaaaaaactgaaacctcc-atcgtgccacgttgtccagccatcatgtcacgatt 3886407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 19223800 - 19223868
Alignment:
Q  180 acatgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaa 248  Q
    ||||||||||||||||   ||| ||||| ||||||  ||||||||||||||  |||| |||||||||||    
T  19223800 acatgttcaaaaaggtgagttgatggtgatttcataaagggaggtttatgtacctttatttcatgagaa 19223868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 1072278 - 1072396
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctga 163  Q
    |||||||||||||||||||||| ||||||||||||||| || |||||||| || ||||||||||||||| ||||||| |||||||||||| |||||||||    
T  1072278 ccatcgtgccacgaaaaatccaatgacttgcctcaaaa-cttaaacctccaatcgtgccacgttgcccaaccatcgtaccacgatttctgcagaacctga 1072376  T
Q  164 ttttaagttaactctcacat 183  Q
    ||||||||||||||||||||    
T  1072377 ttttaagttaactctcacat 1072396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 8995423 - 8995254
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| ||||||| |||| ||||||||||||||| |||| ||  | |||||||||||||||    ||||||| |||||| |||||||| |||||||    
T  8995423 aatacgtttctgttatttgctgtcagcgcaccatcgtgccacgatgtgaccccatcgtgccacgatttttccagtgccttgcc-caaaaactgaaacctc 8995325  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcacat 183  Q
    | || |||||||||||||||||||||||||||||||| ||  ||| |||||||||||||||||||||||||    
T  8995324 caatcgtgccacgttgcccagccatcgtgccacgattcctacagatcctgattttaagttaactctcacat 8995254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 9019870 - 9019701
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| |||| ||||||| |||| ||||||||||||||| |||| ||  | |||||||||||||||    ||||||| |||||| |||||||| |||||||    
T  9019870 aatacgtttctgttatttgctgtcagcgcaccatcgtgccacgatgtgaccccatcgtgccacgatttttccagtgccttgcc-caaaaactgaaacctc 9019772  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcacat 183  Q
    | || |||||||||||||||||||||||||||||||| ||  ||| |||||||||||||||||||||||||    
T  9019771 caatcgtgccacgttgcccagccatcgtgccacgattcctacagatcctgattttaagttaactctcacat 9019701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 19227780 - 19227948
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||||||||| ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||||||||| | ||||||     
T  19227780 aatatgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaattgaaacct- 19227878  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    ||||  |||||||||||||| |||||||||||||||| ||| ||| | | ||||||||||||||||||||    
T  19227879 ccatcatgccacgttgcccaaccatcgtgccacgattcctgcagatcttaattttaagttaactctcaca 19227948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 15530493 - 15530662
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| | | |||| |||||||| |||||||||| |||| |||   |||||||| |||||||   || ||||  ||||||||||   | |||||||    
T  15530493 aatatgtttctataattcactgccagcacaccatcgtgccacgatgcggccccatcgtaccacgaattttcgagtgctttgcctcaaact-tgaaacctc 15530591  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcacat 183  Q
    | ||||||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  15530592 caattgtgccacgttacccagccatcgtgccacgattcctgcagatcctgattttaagttaactctcacat 15530662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 14507546 - 14507716
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctc--aaaaactaaaacc 110  Q
    ||||||||| |||| ||||||| ||||||||||||||| |||| ||| | ||||||||||||| |    ||||||| ||||  ||  ||||||| |||||    
T  14507546 aatatgtttctgtttttcgctggcagcgcaccatcgtgccacgatgcgaccccatcgtgccaccatttttccagtgccttgtatcaaaaaaactgaaacc 14507645  T
Q  111 tcccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    | |||| |||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||    
T  14507646 t-ccatcgtgccacgttgcccagccatcgtgccacga-ttctgcagaaatctgattttaagttaactctcaca 14507716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 33308832 - 33308685
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  |||||||||||||| |||| ||||||||  ||||||    
T  33308832 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacct-ccatcgtgccacgaagcccag 33308734  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    || ||||||||||| ||||| || ||||||||||||||||||||||||||    
T  33308733 ccgtcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 33308685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 33311101 - 33310954
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  |||||||||||||| |||| ||||||||  ||||||    
T  33311101 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacct-ccatcgtgccacgaagcccag 33311003  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    || ||||||||||| ||||| || ||||||||||||||||||||||||||    
T  33311002 ccgtcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 33310954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 26068735 - 26068882
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||  | |||||||||||||||    ||||||| ||||||  |||||||||||||||| ||  ||||||||||||  |    
T  26068735 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcatgccacgttgccttg 26068833  T
Q  134 ccatcgtgccacgatttctgtagaa-cctgattttaagttaactctcaca 182  Q
    || ||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  26068834 ccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 26068882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 29755132 - 29755279
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  |||||||||||||| |||| ||||| ||  ||||||    
T  29755132 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacct-ccatcgtgccgcgaagcccag 29755230  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    || ||||||||||| || || || ||||||||||||||||||||||||||    
T  29755231 ccgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 29755279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 11983400 - 11983562
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| ||||||||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||| |||| | |||| ||||||     
T  11983400 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg-cttacctc-acaactgaaacct- 11983496  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactct 178  Q
    |||| || ||| |||||||| ||||||| |||||| ||||| || ||||||||||||||||||||||    
T  11983497 ccatcgtaccatgttgcccaaccatcgtaccacga-ttctgcagaaacctgattttaagttaactct 11983562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 15533052 - 15533220
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| | ||||| ||| |||||||||||| ||| |||||||| ||| ||||||| ||| |||  |||||||||||||||||  || |    | ||    
T  15533052 aatatgtttctcttatttgctaccagcgcaccattgtgacacgttgcgatctcatcgtggcacaaaatttccagtgacttgcctcacgaaatt---cttc 15533148  T
Q  113 --ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
      |||| ||| ||||||||    |||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  15533149 aaccatcgtggcacgttgcttctccatcgtggcacgatttctgtagatcctgattttaagttaactctcaca 15533220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 26066464 - 26066611
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||| ||| |||| ||  | |||||||||||||||    ||||||| ||||||  || ||||||||||||| || |||||||||||||  |    
T  26066464 gccagcgcaccattgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaataactaaaacctcc-atcgtgccacgttgccttg 26066562  T
Q  134 ccatcgtgccacgatttctgtagaa-cctgattttaagttaactctcaca 182  Q
    || ||||||||||||| ||  |||| ||||||||||||||||||||||||    
T  26066563 ccgtcgtgccacgatt-ctacagaaacctgattttaagttaactctcaca 26066611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 30729199 - 30729284
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctca 98  Q
    |||| |||| ||||||||||||||||||||| |||||| |||||||  | ||||||||| |||||||  |||||||||||||||||    
T  30729199 aatacgtttctgttattcgctgccagcgcactatcgtgccacgttgtgaccccatcgtggcacgaaatttccagtgacttgcctca 30729284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 4790957 - 4791026
Alignment:
Q  182 atgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaagaa 251  Q
    |||||||||||  ||| |||| ||||||||||||||| | |||||||||||||||||| |||||||||||    
T  4790957 atgttcaaaaattttggttggcggtggtttcatggagaggggtttatgtttctttcttccatgagaagaa 4791026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 15541511 - 15541596
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctca 98  Q
    ||||||||| || ||||||||||||||| ||||||||| |||||||| ||| ||||||| || ||||  ||||||||| |||||||    
T  15541511 aatatgtttctgctattcgctgccagcgtaccatcgtgccacgttgcgatctcatcgtggcatgaaatttccagtgacgtgcctca 15541596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 24191620 - 24191668
Alignment:
Q  134 ccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  24191620 ccatcgtggcacgatttctgtaaaacctgattttaagttaactctcaca 24191668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 24192666 - 24192730
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacga 77  Q
    ||||||||| ||||||||||||||||||| ||||| || ||| |||||||||||||||| |||||    
T  24192666 aatatgtttctgttattcgctgccagcgccccatcatgccacattgcaatcccatcgtggcacga 24192730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 24192717 - 24192765
Alignment:
Q  134 ccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  24192717 ccatcgtggcacgatttctgtaaaacctgattttaagttaactctcaca 24192765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 15879511 - 15879461
Alignment:
Q  199 ttggtggtggtttcatggagggaggtttatgtttctttctttcatgagaag 249  Q
    ||||||||| ||| ||||||||||||||||||| |||||||||||||||||    
T  15879511 ttggtggtgatttaatggagggaggtttatgttcctttctttcatgagaag 15879461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 32279910 - 32279794
Alignment:
Q  64 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctga 163  Q
    ||||||||||||||    ||||| ||||||||||| || || |||| ||| || ||||||||||||||| | |||||| |||| || ||| ||||| |||    
T  32279910 ccatcgtgccacgacttttccagcgacttgcctcagaa-ctgaaacatccaatcgtgccacgttgcccaacaatcgtgtcacgtttcctgcagaac-tga 32279813  T
Q  164 ttttaagttaactctcaca 182  Q
    |||||||||||||||||||    
T  32279812 ttttaagttaactctcaca 32279794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 24191569 - 24191633
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacga 77  Q
    ||||||||| ||||||||||||||||||| ||||| |  ||| |||||||||||||||| |||||    
T  24191569 aatatgtttctgttattcgctgccagcgccccatcataccacattgcaatcccatcgtggcacga 24191633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 9450903 - 9450948
Alignment:
Q  203 tggtggtttcatggagggaggtttatgtttctttctttcatgagaa 248  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||||    
T  9450903 tggtggtttcatggatggaggtttttgttcctttctttcatgagaa 9450948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 15541631 - 15541679
Alignment:
Q  134 ccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    |||||||| ||||||||||| | | ||||||||||||||||||||||||    
T  15541631 ccatcgtggcacgatttctgcaaatcctgattttaagttaactctcaca 15541679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 4816639 - 4816749
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| || ||| ||||| |||||||||| |||| ||| | |||||||||||||||    ||||||  |||||||| |||||| |||||||    
T  4816639 aatatgtttctgttttt-gctaccagcacaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtaccttgcctc-aaaactgaaacctc 4816736  T
Q  113 ccattgtgccacg 125  Q
    | || ||||||||    
T  4816737 caatcgtgccacg 4816749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 10189573 - 10189505
Alignment:
Q  182 atgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    ||||||| |||||||| ||||||||| |||  || ||| || ||||||||  |||||||||||||||||    
T  10189573 atgttcataaaggttggttggtggtgattttctgaaggaagatttatgttcatttctttcatgagaaga 10189505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 18089428 - 18089464
Alignment:
Q  213 atggagggaggtttatgtttctttctttcatgagaag 249  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  18089428 atggagggaggtttatatttctttctttgatgagaag 18089464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 30729298 - 30729346
Alignment:
Q  134 ccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    |||||||| |||||||| || ||| |||||| |||||||||||||||||    
T  30729298 ccatcgtggcacgatttttgcagatcctgatattaagttaactctcaca 30729346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 32279934 - 32279898
Alignment:
Q  19 tttatgttattcgctgccagcgcaccatcgtgtcacg 55  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  32279934 tttatgttattcgccgccagcgcaccatcgtgccacg 32279898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 2797 - 2629
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    |||| ||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||    ||||||  |||||||| |||||| |||||||    
T  2797 aatacgtttatgttattcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtaccttgcctc-aaaactgaaacctc 2699  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtagaacctgattttaagttaactctcaca 182  Q
    | || ||||||||||||| ||| |||||| ||| ||| ||| ||| | ||||||||||||||||||||||    
T  2698 caatcgtgccacgttgcctagcaatcgtgtcacaattcctgcagatcttgattttaagttaactctcaca 2629  T

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Target: scaffold0127 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 12907 - 13054
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||  | |||||||||||||||    ||||||| ||||||  |||||||||||||||| || |||||||||||||  |    
T  12907 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgccttg 13005  T
Q  134 ccatcgtgccacgatttctgtagaa-cctgattttaagttaactctcaca 182  Q
     ||||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  13006 acatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 13054  T

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Target: scaffold0025 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 69665 - 69829
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctc 112  Q
    ||||||||| |||| |||||||||||| ||||||||||  ||| ||| ||||||| |||| ||||    |||||||  ||||||||||   | |||||||    
T  69665 aatatgtttctgtttttcgctgccagcacaccatcgtgcaacgatgcgatcccattgtgctacgatttttccagtgctttgcctcaaact-tgaaacctc 69763  T
Q  113 ccattgtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactct 178  Q
    | || ||||||||||||| |||||||||||||||| ||||| || || |||||||||||||||||||    
T  69764 caatcgtgccacgttgcctagccatcgtgccacga-ttctgcagaaatctgattttaagttaactct 69829  T

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Target: scaffold0025; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 73468 - 73540
Alignment:
Q  106 aaacctcccattgtgccacgttgcccagccatcgtgccacgatttctgtagaac-ctgattttaagttaactct 178  Q
    |||||||| || ||||||||||||| |||||||||||||||||| ||| | ||  |||||||||||||||||||    
T  73468 aaacctccaatcgtgccacgttgcctagccatcgtgccacgatt-ctgcataaatctgattttaagttaactct 73540  T

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Target: scaffold0140 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 22062 - 21915
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  |||||||||||||| |||| ||||| ||  ||||||    
T  22062 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacct-ccatcgtgccgcgaagcccag 21964  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |  ||||||||||| || || || ||||||||||||||||||||||||||    
T  21963 ctgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 21915  T

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Target: scaffold0140; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 24337 - 24190
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||    ||||||| ||||||  |||||||||||||| |||| ||||| ||  ||||||    
T  24337 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacct-ccatcgtgccgcgaagcccag 24239  T
Q  134 ccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |  ||||||||||| || || || ||||||||||||||||||||||||||    
T  24238 ctgtcgtgccacga-ttgtgcagaaacctgattttaagttaactctcaca 24190  T

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Target: scaffold0472 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 6074 - 5927
Alignment:
Q  34 gccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactaaaacctcccattgtgccacgttgcccag 133  Q
    ||||||||||||||||| || | ||  | |||||| ||||||||    ||||||| ||||||| |||||||||||||||| || ||||| ||  ||||||    
T  6074 gccagcgcaccatcgtgccatgatgagaccccatcatgccacgatttttccagtgccttgcctaaaaaactaaaacctcc-atcgtgccgcgaagcccag 5976  T
Q  134 ccatcgtgccacgatttctgtagaa-cctgattttaagttaactctcaca 182  Q
    || |||||||||||||  || |||| ||||||||||||||||||||||||    
T  5975 ccgtcgtgccacgattg-tgcagaaacctgattttaagttaactctcaca 5927  T

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Target: scaffold0068 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 29005 - 28941
Alignment:
Q  118 gtgccacgttgcccagccatcgtgccacgatttctgtag-aacctgattttaagttaactctcaca 182  Q
    |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||    
T  29005 gtgccacgttgcccagccatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 28941  T

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Target: scaffold0068; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 29078 - 29014
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatcgtgccacga 77  Q
    ||||||||| |||| ||||||||||||||||||||||| |||| ||| | |||||||||||||||    
T  29078 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacga 29014  T

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Target: scaffold0211 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 18610 - 18678
Alignment:
Q  182 atgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    ||||| |||||||||| || ||| ||||||||| |||||||||||||||||||||||  ||||||||||    
T  18610 atgtttaaaaaggttggttagtgatggtttcattgagggaggtttatgtttctttctcacatgagaaga 18678  T

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Target: scaffold0339 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 3914 - 3859
Alignment:
Q  13 aatatgtttatgttattcgctgccagcgcaccatcgtgtcacgttgcaatcccatc 68  Q
    |||| |||||||||||||||||||| |||||||||||| ||||||||||| |||||    
T  3914 aatacgtttatgttattcgctgccatcgcaccatcgtgccacgttgcaattccatc 3859  T

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Target: scaffold0114 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 36969 - 36901
Alignment:
Q  182 atgttcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    ||||| |||||||||| || ||| ||||||||| | |||||||||||||||||||||  ||||||||||    
T  36969 atgtttaaaaaggttgtttagtgatggtttcattgcgggaggtttatgtttctttctcacatgagaaga 36901  T

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Target: scaffold0380 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 16731 - 16669
Alignment:
Q  186 tcaaaaaggttgattggtggtggtttcatggagggaggtttatgtttctttctttcatgagaa 248  Q
    |||||||||| | ||||||||| ||| ||||| |||| |||||||| ||||||||||||||||    
T  16731 tcaaaaaggtgggttggtggtgatttaatggatggagatttatgttcctttctttcatgagaa 16669  T

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Target: scaffold0284 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 6987 - 7037
Alignment:
Q  199 ttggtggtggtttcatggagggaggtttatgtttctttctttcatgagaag 249  Q
    ||||||||| ||| ||||||| ||||||||||| |||||||||||||||||    
T  6987 ttggtggtgatttaatggaggtaggtttatgttcctttctttcatgagaag 7037  T

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Target: scaffold0284; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 1013 - 1054
Alignment:
Q  209 tttcatggagggaggtttatgtttctttctttcatgagaaga 250  Q
    |||||| |||||||||||||||||||||||  ||||||||||    
T  1013 tttcattgagggaggtttatgtttctttctcacatgagaaga 1054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 29731 - 29781
Alignment:
Q  199 ttggtggtggtttcatggagggaggtttatgtttctttctttcatgagaag 249  Q
    ||||||||| ||| ||||||| ||||||||||| |||||||||||||||||    
T  29731 ttggtggtgatttaatggaggtaggtttatgttcctttctttcatgagaag 29781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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