View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_5 (Length: 653)
Name: NF7347_low_5
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 437
Target Start/End: Complemental strand, 41897093 - 41896676
Alignment:
| Q |
19 |
gcaccatgatttt-ggtactagctagtagctagaaccccaagaacaatagtaaatatcaataatattgtcacgggaaaactcaacaaattagttat--ca |
115 |
Q |
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| T |
41897093 |
gcaccatgatttttggtactagctagtagctagaaccccaagaacaatagtaagtatcaataatattgtcacgggaaaactcaacaaattagttatatca |
41896994 |
T |
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| Q |
116 |
cttttatagctaggttatatataagcttggaataacactgataattataacctaaaataaaaagaaaggtagcttcaaaatnnnnnnnnnnnnnnnnnca |
215 |
Q |
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| T |
41896993 |
cttttatagctaggttatatataagcttggaataacactgataattataacctaaaataaaacgaaaggtagcttcaaaatgcagatgcagcagc---ca |
41896897 |
T |
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| Q |
216 |
cattaatcttctggatcaaaataagatactagtagttatagaagaaataaagtcaaaattcaatcaaaagtgatattagcaagataataacgnnnnnnnc |
315 |
Q |
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| T |
41896896 |
cattaatcttctggatcaaaataatatactagtagttatagaagaaataaagccaaaattcaatcaaaagtgatattagcacgataataacgaaaaaaac |
41896797 |
T |
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| Q |
316 |
accaaattaaagaaacaaaacaacatccatcccataaataataataacctatgtaccctattttgttagtggttctgatcatgatcactccaaatttcaa |
415 |
Q |
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| T |
41896796 |
accaaattaaagaaacaaaacaacatccatcc-ataaataataataacctatgtaccctattttgttagtggttctgatcatgatcacttcaaatttcaa |
41896698 |
T |
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| Q |
416 |
acatccactccccaacattacc |
437 |
Q |
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| T |
41896697 |
acatccactccccaacattacc |
41896676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 508 - 639
Target Start/End: Complemental strand, 41896624 - 41896503
Alignment:
| Q |
508 |
gcaccaaccccttgttttatcacnnnnnnnccttcttcttatccattatctaccatgatctaccatgatcctccacctaacattccattccaataaccag |
607 |
Q |
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| T |
41896624 |
gcaccaaccccttgttttatcactttttttccttcttcttatccattatctaccat----------gatcctccacctaacattccgttccaataaccag |
41896535 |
T |
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| Q |
608 |
tagaatcaccttgagttctattttgctgatgt |
639 |
Q |
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| T |
41896534 |
tagaatcaccttgagttctattttgctgatgt |
41896503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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