View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_50 (Length: 265)
Name: NF7347_low_50
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 5984748 - 5984506
Alignment:
| Q |
1 |
cacaaccccgctcatccgtgaggagtcctccagttcattatctatgctatgaactgcaaataattaaagagcacacaaatacaaccccatcaagcaacca |
100 |
Q |
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| T |
5984748 |
cacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaataa----agagcacacaaatacaaccccatcaagcaacca |
5984653 |
T |
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| Q |
101 |
agcaaaaactacaaaatgtattattattattattcatcatgttgttaacatttctgactaatggtgtatgaccaaaaattaaccaaaatattctggattt |
200 |
Q |
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| T |
5984652 |
agcaaaaactacaaaatgtattattattatt---catcatgttgttaacatttctgactaatggtgtatgaccaaaaattaaccaaaatattctggattt |
5984556 |
T |
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| Q |
201 |
caannnnnnnagttcatcgaaaattgactatggtttcttttcaaatatgatg |
252 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5984555 |
caa--tttttagttcatcgaaaattgactatggtttcttttcaaataagatg |
5984506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 5963606 - 5963544
Alignment:
| Q |
1 |
cacaaccccgctcatccgtgaggagtcctccagttcattatctatgctatgaactgcaaataa |
63 |
Q |
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| T |
5963606 |
cacaaccccacgcatccgtgaggaatcctccagttcattatcaatgttatgaactgcaaataa |
5963544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 5935197 - 5935147
Alignment:
| Q |
13 |
catccgtgaggagtcctccagttcattatctatgctatgaactgcaaataa |
63 |
Q |
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| T |
5935197 |
catccatgaggagtcctccagttcattatctatgttgtgaactgcaaataa |
5935147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5968739 - 5968684
Alignment:
| Q |
1 |
cacaaccccgctcatccgtgaggagtcctccagttcattatctatgctatgaactg |
56 |
Q |
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||||||||| | ||||||||||| |||||||||||||| |||||||| ||||||| |
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| T |
5968739 |
cacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactg |
5968684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8715408 - 8715463
Alignment:
| Q |
1 |
cacaaccccgctcatccgtgaggagtcctccagttcattatctatgctatgaactg |
56 |
Q |
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||||||||| | ||||||||||| |||||||||||||| |||||||| ||||||| |
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| T |
8715408 |
cacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactg |
8715463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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