View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_52 (Length: 254)
Name: NF7347_low_52
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 14500621 - 14500402
Alignment:
| Q |
17 |
cagttctcgagtaaacactcattttaatccactaaatatgacataatgtgtcacaatcgttcctaaataatttggtacggtaatttattctaagtgtgcc |
116 |
Q |
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| T |
14500621 |
cagttctcgagtaaacactcattttaatccactaaatgtgacataatgtgtcacaatcgttcctaaataatttggtacagtaatttattctaagtgtgcc |
14500522 |
T |
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| Q |
117 |
tacagatgactatcattaaagttcttggatagttggatgttataagttattgtcattcaggtctctacaaaaacacatttatatacattctatatgaata |
216 |
Q |
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||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14500521 |
tacggatgactatcgttaaagtccttggatagttggatgttataagttattgtcattcaggtctctacaaaaacacatttatatacattctatatgaata |
14500422 |
T |
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| Q |
217 |
tactgtcttctcataatttt |
236 |
Q |
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|| ||||||||||||||||| |
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| T |
14500421 |
tattgtcttctcataatttt |
14500402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 14498774 - 14498617
Alignment:
| Q |
17 |
cagttctcgagtaaacactcattttaatccactaaatatgacataatgtgtcacaatcgttcctaaataatttggtacggtaatttattctaagtgtgcc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
14498774 |
cagttctcgagtaaacactcattttaatccactaaatgtgacataatgtgtcacaatcattcctaagtaatttggtacagtaatttattctaagtgtgcc |
14498675 |
T |
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| Q |
117 |
tacagatgactatcattaaagttcttggatagttggatgttataagttattgtcattc |
174 |
Q |
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| T |
14498674 |
tacagatgactatcgttaaagtccttggatagttggatgttataagttattgtcattc |
14498617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 14498621 - 14498589
Alignment:
| Q |
202 |
cattctatatgaatatactgtcttctcataatt |
234 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
14498621 |
cattctatatgaatatattgtcttctcataatt |
14498589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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