View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_54 (Length: 249)
Name: NF7347_low_54
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_54 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 36854940 - 36854707
Alignment:
| Q |
16 |
atacaaaagacaataaagtgaagttcccttacttttttccgtagccacggagcacctgcagtttcatttcacgttcagcttcagtatcagtgtccttaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36854940 |
atacaaaagacaataaagtgaagttcccttacttttttccgtagccacggagcacctgcagtttcatttcacgttcagcttcagtatcagtgtccttaaa |
36854841 |
T |
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| Q |
116 |
ttccatttctgccaaaacttgctcagcatcattgtcgtattcaatctcaaattcacctctgttagagttgtaccctctcaacacttccatagatggctta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36854840 |
ttccatttctgccaaaacttgctcagcatcattgtcgtattcaatctcaaattcacctctgttagaattgtaccctctcaacacttccatagatggctta |
36854741 |
T |
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| Q |
216 |
tattccccagataatttaggtttcttttcaccag |
249 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
36854740 |
tattccccagataatttaggtttcttttcaccag |
36854707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 62 - 247
Target Start/End: Original strand, 37367773 - 37367958
Alignment:
| Q |
62 |
acggagcacctgcagtttcatttcacgttcagcttcagtatcagtgtccttaaattccatttctgccaaaacttgctcagcatcattgtcgtattcaatc |
161 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37367773 |
acggagcacttgcagtttcatttcacgttcagcttcagtatcagtgtccaaaaattccatttctgccaaaacttgctcagcatcattgtcatattcaata |
37367872 |
T |
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| Q |
162 |
tcaaattcacctctgttagagttgtaccctctcaacacttccatagatggcttatattccccagataatttaggtttcttttcacc |
247 |
Q |
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| T |
37367873 |
tcaaagtcacctctcttagaattgtacccactcaacactttcatagaaggcctatattccccagataatttaggtttcttttcacc |
37367958 |
T |
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