View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_58 (Length: 239)
Name: NF7347_low_58
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 42570478 - 42570276
Alignment:
| Q |
21 |
cagttacaaaacaaatcaacaagcacctaaaaagtattaaccggaattagagataaaaaattcgatacaccttaacatcaatgcaaccacccacgaacat |
120 |
Q |
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| T |
42570478 |
cagttacaaaacaaatcaacaagcacctaaaaagtattaactggaattagagataaaaaattcgatacaccttaacatcaatgcaaccacccacgaacat |
42570379 |
T |
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| Q |
121 |
gctgatgttatccttggtgaaagcaggcaggcgatcaag-atagagggnnnnnnnccatagatcatggacgcgagcaattttatcaacaaaagggttcaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42570378 |
gctgatgttatccttggtgaaagcaggcaggcgatcaagaatagagggtttttttctatagatcatggacgcgagcaattttatcaacaaaagggttcaa |
42570279 |
T |
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| Q |
220 |
aaa |
222 |
Q |
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||| |
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| T |
42570278 |
aaa |
42570276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 42577664 - 42577465
Alignment:
| Q |
21 |
cagttacaaaacaaatcaacaagcacctaaaaagtattaaccggaattagagataaaaaattcgatacaccttaacatcaatgcaaccacccacgaacat |
120 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||||| |||||| |||||||||||||| | |||| | |||||||| |
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| T |
42577664 |
cagttacaaaacaaatcaagaagcacctaaaaagtattaaccgaaatcagagacaaaaa--tcgatagaccttaacatcaatccgaccatctacgaacat |
42577567 |
T |
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| Q |
121 |
gctgatgttatccttggtgaaagcaggcaggcgatcaagatagagggnnnnnnnccatagatcatggacgcgagcaattttatcaacaaaagggttcaaa |
220 |
Q |
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|| |||||||| |||||||||||| | ||| || ||| | || | |||||| | |||||||| |||||||||||||||||||||| ||||| |
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| T |
42577566 |
gccaatgttatcgttggtgaaagcactctggctattaagtttaagagtttctatccatagcttatggacgcaagcaattttatcaacaaaagggatcaaa |
42577467 |
T |
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