View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_6 (Length: 643)
Name: NF7347_low_6
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 20 - 622
Target Start/End: Original strand, 6316622 - 6317227
Alignment:
| Q |
20 |
atcagactttataaataggaaactaaagatcaatgcaaatagagaaaaataaccatattcactgccgaaaactatatcataacctcagtctgcatcatat |
119 |
Q |
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| T |
6316622 |
atcagactttataaataggaaactaaagatcaatgcaaatagagaaaaataaccatattcactgccgaaaactatatcataacctcagtctgcatcatat |
6316721 |
T |
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| Q |
120 |
tgaaaccatattaaccccagacacgtatcggt--tgtattgtgtcctggtctattttaatctaaaacatgaaagtagtaacggaattatataagtaagtg |
217 |
Q |
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| T |
6316722 |
tgaaaccatattaaccccagacacgtatcggtattgtattgtgtcttggtctattttaatctaaaacatgaaagtagtaacggaattatataagtaagtg |
6316821 |
T |
|
| Q |
218 |
aaaaagaagttttggttcttagtgtagtcagttcaaaaactacgagaaaaaccatagtggccttcatttttatgaaatgctatatgtatcatattctatc |
317 |
Q |
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| T |
6316822 |
aaaaagaagttttggttcttagtgtagtcagttcaaaaactacgagaaaaaccatagtggccttcatttttatgaaatgctatatgtatcatattctatc |
6316921 |
T |
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| Q |
318 |
atcattgaatagaagtcgaaataggtcaaaatcagaacacattggcaagataaagaaatggaaaaagtcagaacagcacctaacaacccttaacatcttt |
417 |
Q |
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| T |
6316922 |
atcattgaatagaagtcgaaataggtcaaaatcagaacacattggcaagataaagaaatggaaaaagtcagaacagcacctaacaacccttaacatcttt |
6317021 |
T |
|
| Q |
418 |
gatgccttaaggcttcaaagttacgactatatcatagaaaggtttcaaagtttgtctgtctttttagcttcagagcaacaagagttatctcttaaagaaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6317022 |
gatgccttaaggcttcaaagttacgactatatcatagaaaggctgcaaagtttgtctgtctttttagcttcagagcaacaagagttatctcttaaagaaa |
6317121 |
T |
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| Q |
518 |
tgttattctacaagagcatttaaataaagaataaa-cttgagttccacaatatctaagtctcagtaagagtattattattcattaatcattaccttgctc |
616 |
Q |
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| T |
6317122 |
tgttattctacaagagcatttaaataaagaataaagcttgagttccacaatatctaagtctcagtaagagtattattattcattaatcattaccttgctc |
6317221 |
T |
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| Q |
617 |
gaatat |
622 |
Q |
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|||||| |
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| T |
6317222 |
gaatat |
6317227 |
T |
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