View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_7 (Length: 636)
Name: NF7347_low_7
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 587; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 17 - 631
Target Start/End: Original strand, 43060928 - 43061542
Alignment:
| Q |
17 |
attttctgcattggagcaagtttgaggtaattttctgcatagttcaaagctggtttttggcatgtaggttgctgttgtgcagccgagctgttttgatgtt |
116 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
43060928 |
attttctgcattggagcaactttgaggtaattttctgcatagttcaaagctggtttttggcatgtgggttgctgttgtgcagccgagctgtttcgatgtt |
43061027 |
T |
|
| Q |
117 |
gcagctggtacgtagccgcatttcttccgcacctgggttctgatacgactccaagtgttccagctgcgttatatcagttttattttccgctctttccttt |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43061028 |
gcagctggtacgtagccgcatttcttccgcacctgggttctgatacgactccaagtgttccagctgcgttatatcagttttattttccgctctttccttt |
43061127 |
T |
|
| Q |
217 |
ggcatgcaagtgtttcggttcaatttacatattttattgtcagttttacctgactgtttgtatttgtctcctgctgttttctcagtataggtggctacaa |
316 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43061128 |
ggcatgcaagtgtttcagttcaatttacatattttattgtcagttttacctgactgtttgtatttgtctcctgctggtttctcagtataggtggctacaa |
43061227 |
T |
|
| Q |
317 |
tttaatttggctctttagtgtagtttgttttggttcgttttcaagatggttaaataaacactttcaaacaaatagttgaaacttgctgatatttttgttg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43061228 |
tttaatttggctctttagtgtagtttgttttggttcgttttcaagatggttaaataaacactttcaaacaaatagttgaaacttgctgatatttttgttg |
43061327 |
T |
|
| Q |
417 |
atgttggaaaattgcagcgaagtaaatacaatcatagttgtataaaaattaagtatgtgtgttgtgagtgtgtacggttgcgcatagtatgcacgatgtt |
516 |
Q |
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| T |
43061328 |
atgttggaaaattgcagcaaagtaaatacaatcatagttgtataaaaattaagtatgtgtgttgtgagtgtgtacggttgcgcatagtatgcacgatgtt |
43061427 |
T |
|
| Q |
517 |
gcaacaatatgagaattggagacgacaatgaaagttgtaacaatgagtacatatgattatatgaatatagtagtggttaagataaatatgttgatttact |
616 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43061428 |
gcaacaatatgagaattggagacgacaatgaaagttgtaacaatgagtacatatgattatatgaatatagtagtggttaagataaatatgttgatttact |
43061527 |
T |
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| Q |
617 |
gcttttcttctcact |
631 |
Q |
| |
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|||||||||| |||| |
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| T |
43061528 |
gcttttcttcacact |
43061542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 1480589 - 1480637
Alignment:
| Q |
27 |
ttggagcaagtttgaggtaattttctgcatagttcaaagctggtttttg |
75 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
1480589 |
ttggagcaagtttgaggtaattttctgcaaagttcagagctggtttttg |
1480637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 499 - 550
Target Start/End: Original strand, 1480831 - 1480882
Alignment:
| Q |
499 |
catagtatgcacgatgttgcaacaatatgagaattggagacgacaatgaaag |
550 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| |||||||| |||||| |
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| T |
1480831 |
catagtatgcacgaggttgcaacaatatgagaattgaagacgacattgaaag |
1480882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 19180393 - 19180441
Alignment:
| Q |
27 |
ttggagcaagtttgaggtaattttctgcatagttcaaagctggtttttg |
75 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
19180393 |
ttggagcaagtttgaggtaattttctgcaaagttcagagctggtttttg |
19180441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 499 - 550
Target Start/End: Original strand, 19180635 - 19180686
Alignment:
| Q |
499 |
catagtatgcacgatgttgcaacaatatgagaattggagacgacaatgaaag |
550 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||| |||||| |
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| T |
19180635 |
catagtatgcacgaggttgcaacaatatgagaattgaagacgacattgaaag |
19180686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 1380596 - 1380662
Alignment:
| Q |
322 |
tttggctctttagtgtagtttgttttggttcgttttcaagatggttaaataaacactttcaaacaaa |
388 |
Q |
| |
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|||| |||||||| |||||| ||||| ||| | ||||||||| ||||||||||| | |||||||||| |
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| T |
1380596 |
tttgtctctttagcgtagttggttttagtttgatttcaagatagttaaataaacgccttcaaacaaa |
1380662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 374
Target Start/End: Original strand, 40910936 - 40910989
Alignment:
| Q |
321 |
atttggctctttagtgtagtttgttttggttcgttttcaagatggttaaataaa |
374 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| ||||| |||| |||||||||| |
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| T |
40910936 |
atttgtctctttagtgtagttggttttggtttgttttagagatagttaaataaa |
40910989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 11475212 - 11475252
Alignment:
| Q |
33 |
caagtttgaggtaattttctgcatagttcaaagctggtttt |
73 |
Q |
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|||||||||||||||| ||| | |||||||||||||||||| |
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| T |
11475212 |
caagtttgaggtaattctctacgtagttcaaagctggtttt |
11475252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 11503252 - 11503292
Alignment:
| Q |
33 |
caagtttgaggtaattttctgcatagttcaaagctggtttt |
73 |
Q |
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|
|||||||||||||||| ||| | |||||||||||||||||| |
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| T |
11503252 |
caagtttgaggtaattctctacgtagttcaaagctggtttt |
11503292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 38251754 - 38251714
Alignment:
| Q |
33 |
caagtttgaggtaattttctgcatagttcaaagctggtttt |
73 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||||||| |
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|
| T |
38251754 |
caagtttgaggtaattctctacgtagttcaaagctggtttt |
38251714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 43157788 - 43157828
Alignment:
| Q |
33 |
caagtttgaggtaattttctgcatagttcaaagctggtttt |
73 |
Q |
| |
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|||||||||||||||| ||| | |||||||||||||||||| |
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| T |
43157788 |
caagtttgaggtaattctctacgtagttcaaagctggtttt |
43157828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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