View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_low_9 (Length: 589)
Name: NF7347_low_9
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_low_9 |
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| [»] scaffold0258 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 161 - 571
Target Start/End: Original strand, 20628408 - 20628818
Alignment:
| Q |
161 |
caacttgtaatgataagaaatggtgctttgcaaattgcatttagacacacaaatcagtctctaatgagttattagaaggagaaacaaagtgctctaatta |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20628408 |
caacttgtaatgataagaaatggtgctttgcaaattgcatttagacacacaaatcagtctctaatgagttattagaaggagaaacaaagtgctctaatta |
20628507 |
T |
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| Q |
261 |
tgaggttaattatttaactatgttttggtgtcaaatgggcctacatcttgatgagaaccacgttcatgtggagcaatgcaaggccccaacaaaaagggaa |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20628508 |
tgaggttaattatttaactatgttttggtgtcaaatgggcctacatcttgatgagaaccacgttcatgtggagcaatgcaaggccccaacaaaaagggaa |
20628607 |
T |
|
| Q |
361 |
aaatcaaaggataccaagaacttcacaaatgattatagtaaagtaaaagagaaaacataaaagtagaaataaactatgtcccatgccaccaacattttgc |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20628608 |
aaatcaaaggataccaagaacttcacaaatgattatagtaaagtaaaagagaaaacataaaagtagaaataaactatgtcccatgccaccaacattttgc |
20628707 |
T |
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| Q |
461 |
acatttttctcagcaataacaagtgttattgattctgttctttgttattctctttataataatttgtatgttctctaactagattagttacattccaaaa |
560 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20628708 |
acatttttctcagcaataacaagtgttattgattctgttctttgttattctctttataataatttgtatgttctctaactacattagttacattccaaaa |
20628807 |
T |
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| Q |
561 |
catgggcaaga |
571 |
Q |
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| T |
20628808 |
catgggcaaga |
20628818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 20628262 - 20628358
Alignment:
| Q |
15 |
atgaactatattacagaaggtaaaacactattaacctttaattttttatggttcacatggtctgttgttgttaacttaacaattcttcaacctcaac |
111 |
Q |
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| T |
20628262 |
atgaactatattacagaaggtaaagcactattaacctttaattttttatggttcacatggtctgttgttgttaacttaacaattcttcaacctcaac |
20628358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 8855709 - 8855747
Alignment:
| Q |
21 |
tatattacagaaggtaaaacactattaacctttaatttt |
59 |
Q |
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| T |
8855709 |
tatattacaggaggtaaaacactattaacccttaatttt |
8855747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 30916818 - 30916855
Alignment:
| Q |
15 |
atgaactatattacagaaggtaaaacactattaacctt |
52 |
Q |
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| T |
30916818 |
atgacctatattacagagggtaaaacactattaacctt |
30916855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 1975826 - 1975861
Alignment:
| Q |
20 |
ctatattacagaaggtaaaacactattaacctttaa |
55 |
Q |
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| T |
1975826 |
ctatattacagaaggtaaaacactattaacccttaa |
1975861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0258 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0258
Description:
Target: scaffold0258; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 18679 - 18633
Alignment:
| Q |
15 |
atgaactatattacagaaggtaaaacactattaacctttaatttttt |
61 |
Q |
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| T |
18679 |
atgacctatattacaggaggtaaaacactattaacccttattttttt |
18633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 17167537 - 17167493
Alignment:
| Q |
15 |
atgaactatattacagaaggtaaaacactattaacctttaatttt |
59 |
Q |
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|||| |||||||||||| |||||||||||||||||| || ||||| |
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| T |
17167537 |
atgacctatattacagatggtaaaacactattaaccctttatttt |
17167493 |
T |
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