View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7348_low_1 (Length: 641)

Name: NF7348_low_1
Description: NF7348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7348_low_1
NF7348_low_1
[»] chr5 (17 HSPs)
chr5 (303-568)||(10408601-10408882)
chr5 (15-281)||(10412217-10412474)
chr5 (12-261)||(10410664-10410904)
chr5 (12-217)||(25725812-25726010)
chr5 (123-217)||(40382864-40382959)
chr5 (30-193)||(25502047-25502201)
chr5 (30-86)||(8081534-8081590)
chr5 (129-193)||(25507050-25507115)
chr5 (587-627)||(10408534-10408574)
chr5 (242-280)||(25502229-25502267)
chr5 (245-298)||(21637364-21637416)
chr5 (40-91)||(6742569-6742620)
chr5 (32-79)||(40382781-40382828)
chr5 (245-280)||(4895928-4895963)
chr5 (303-341)||(4857475-4857513)
chr5 (40-77)||(25506970-25507007)
chr5 (303-339)||(25017657-25017693)
[»] chr4 (6 HSPs)
chr4 (65-298)||(25054166-25054390)
chr4 (12-192)||(28395557-28395732)
chr4 (12-193)||(4847692-4847865)
chr4 (139-217)||(11809887-11809966)
chr4 (245-298)||(18807582-18807634)
chr4 (224-280)||(11809948-11810005)
[»] chr3 (11 HSPs)
chr3 (40-298)||(4608947-4609183)
chr3 (123-254)||(4602166-4602297)
chr3 (12-193)||(28133653-28133826)
chr3 (12-217)||(27682101-27682297)
chr3 (12-86)||(41874542-41874616)
chr3 (12-119)||(26667002-26667111)
chr3 (123-191)||(27972530-27972595)
chr3 (199-235)||(27683855-27683891)
chr3 (245-298)||(26667218-26667268)
chr3 (303-341)||(20945284-20945322)
chr3 (303-341)||(39931965-39932003)
[»] chr2 (14 HSPs)
chr2 (12-217)||(45035064-45035261)
chr2 (30-217)||(45033269-45033448)
chr2 (129-193)||(1015655-1015719)
chr2 (144-193)||(17308628-17308677)
chr2 (123-172)||(33187280-33187329)
chr2 (224-298)||(45035008-45035082)
chr2 (12-77)||(1015762-1015827)
chr2 (32-119)||(3372476-3372564)
chr2 (145-192)||(4399574-4399621)
chr2 (12-79)||(14007778-14007845)
chr2 (242-280)||(17308562-17308600)
chr2 (40-86)||(17308719-17308765)
chr2 (32-78)||(33187197-33187243)
chr2 (303-343)||(2131842-2131882)
[»] chr7 (7 HSPs)
chr7 (157-261)||(964953-965057)
chr7 (19-193)||(21464439-21464611)
chr7 (32-86)||(29924662-29924716)
chr7 (244-298)||(21631449-21631502)
chr7 (134-172)||(29924591-29924629)
chr7 (229-260)||(965049-965080)
chr7 (245-280)||(9878367-9878402)
[»] chr1 (9 HSPs)
chr1 (12-217)||(44782187-44782385)
chr1 (162-260)||(9217499-9217597)
chr1 (12-217)||(46679609-46679808)
chr1 (248-287)||(35891592-35891631)
chr1 (303-341)||(32152242-32152280)
chr1 (250-278)||(3284469-3284497)
chr1 (250-278)||(9311996-9312024)
chr1 (305-341)||(13145504-13145540)
chr1 (303-339)||(35365967-35366003)
[»] chr8 (8 HSPs)
chr8 (30-217)||(30634251-30634431)
chr8 (123-217)||(1175018-1175113)
chr8 (30-91)||(35674859-35674920)
chr8 (30-108)||(35673354-35673433)
chr8 (224-298)||(1174962-1175036)
chr8 (245-280)||(35673507-35673542)
chr8 (12-86)||(1175145-1175219)
chr8 (303-341)||(36309579-36309617)
[»] chr6 (6 HSPs)
chr6 (123-193)||(24544662-24544732)
chr6 (12-172)||(15688988-15689140)
chr6 (122-193)||(34350440-34350511)
chr6 (39-115)||(9373602-9373679)
chr6 (250-298)||(33869194-33869241)
chr6 (250-280)||(15868357-15868387)
[»] scaffold0570 (1 HSPs)
scaffold0570 (122-172)||(3043-3093)
[»] scaffold0060 (1 HSPs)
scaffold0060 (245-298)||(9188-9240)
[»] scaffold0251 (1 HSPs)
scaffold0251 (250-280)||(6191-6221)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 4e-92; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 303 - 568
Target Start/End: Complemental strand, 10408882 - 10408601
Alignment:
Q  303 gtattaaattttacttttcatattttaagaaaagttagttgaagtaataataataattagaggtatgtttaggtgtttatataaggataatttaaacaaa 402  Q
    ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |    
T  10408882 gtattcaatattacttttcatattttaagaaaagttagttggagtaataataatagttaaaggtatgtttaggtgtttatataaggataatttaaacaga 10408783  T
Q  403 aatttattatttaaggataatctttagtcaaataggtgtttatatatagagactgccccagtaaaaact---------------actttgaatagtgatg 487  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||||| |||||||  |||| ||||||||               ||||||||||||||||    
T  10408782 aatttatcatttaagaataatctttagttaaataggtgtttatatacagagactcgcccaataaaaactacttaactaaagactactttgaatagtgatg 10408683  T
Q  488 -attttttgtgtgcaaattccattcgagaaacatcatcatagttttccaacctgactttaaatgtgtacgggtcatctaatt 568  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10408682 cattttttgtgtgcaaattccattcgagaaacatcatcatagttttccaacctgactttaaatgtgtacgggtcatctaatt 10408601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 10412474 - 10412217
Alignment:
Q  15 aattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa-gatgcaaatgaataaaatatgt 113  Q
    |||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||| ||||||  | | ||||||| ||||||||||||||||| || |    
T  10412474 aattaaaggatttcatggttttaggtcaaatgcaatcgaaagatagattgtgtaattttctctaagaattatcacaaagatgcaaatgaataaaagatat 10412375  T
Q  114 gaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctactaggttacttgctctccaagtt 213  Q
    ||||           |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  10412374 gaaat----------agtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctactaggttacttgctctccaagtt 10412285  T
Q  214 atctagattgcttgcactccaaattaccttctcactatactctaatagtccccctcaaactcaaaatt 281  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10412284 atctggattgcttgcactccaaattaccttctcactatactctaatagtccccctcaaactcaaaatt 10412217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 10410904 - 10410664
Alignment:
Q  12 atgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa-gatgcaaatgaataaaata 110  Q
    |||||| |||| ||| | |||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| |    
T  10410904 atgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcatcccaaagatgcaaatgaataaaaga 10410805  T
Q  111 tgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctactaggttacttgctctccaa 210  Q
    |||||||           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  10410804 tgtgaaat----------agtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctactaggttacttgctctccaa 10410715  T
Q  211 gttatctagattgcttgcactccaaattaccttctcactatactctaatag 261  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  10410714 gttatctagattgcttgcactccaagttaccttttcactatactctaatag 10410664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 25725812 - 25726010
Alignment:
Q  12 atgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaataaaata 110  Q
    |||||| |||| ||| | ||||||||  ||||||||||| |||||||||||||||||||||||||||| |||||| || ||||  |||  | |||||| |    
T  25725812 atgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattaccaagaaacaatcgtataaaaga 25725911  T
Q  111 tgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac-taggttacttgctctcca 209  Q
    |     |||    |||| |||||||||||||| |||||||||||||| |||||||||||||| | |||||||||||||||| ||| | ||||||||||||    
T  25725912 t-----aat----gaaatagtacataggtgtaacttatttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctctcca 25726002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 123 - 217
Target Start/End: Original strand, 40382864 - 40382959
Alignment:
Q  123 tgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac-taggttacttgctctccaagttatct 217  Q
    ||||| |||| |||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||| ||| | |||| ||||||||| |||||    
T  40382864 tgaaatagtatataggtgtagcttatttatagtgacttggagtacctaactccctaactaactttctacatagataacttactctccaagatatct 40382959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 25502047 - 25502201
Alignment:
Q  30 tggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatca-caagatgcaaatgaataaaatatgtgaaaatatgtgaaac 128  Q
    ||||||||  ||||||||||| |||| ||||||||||||||||||||||| |||||| | |||||  ||| || |||||| || || ||               
T  25502047 tggttctagatcaaatgcaatggaaatatagattgtgtaattctctctaggagtcattatcaagaaacaattgtataaaagatatggaat---------- 25502136  T
Q  129 agtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctacta 193  Q
    ||||||||| |||| |||||||||||||| |||||||||||||| | ||||||||||||||||||    
T  25502137 agtacatagatgtaacttatttatagtgaattggagtaactaactccctaactaactttctacta 25502201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 8081590 - 8081534
Alignment:
Q  30 tggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcat 86  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||    
T  8081590 tggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcat 8081534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 25507050 - 25507115
Alignment:
Q  129 agtacataggtgtagcttatttatagtgatttggagtaact-aaccctctaactaactttctacta 193  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||| | |||| |||||||||||||    
T  25507050 agtacataggtgtagcttatttatagtgaattggagtaactaaactccctaagtaactttctacta 25507115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 587 - 627
Target Start/End: Complemental strand, 10408574 - 10408534
Alignment:
Q  587 ctaattaaagccattactcttccttctatacggcagatgtg 627  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10408574 ctaattaaagccattactcttccttctatacggcagatgtg 10408534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 25502229 - 25502267
Alignment:
Q  242 ttctcactatactctaatagtccccctcaaactcaaaat 280  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25502229 ttctcactatactctaatagtccccctcaaactcaaaat 25502267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 21637364 - 21637416
Alignment:
Q  245 tcactatactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 298  Q
    ||||||||||||||||||||||||||||||||| ||| || |||||||||||||    
T  21637364 tcactatactctaatagtccccctcaaactcaagatt-gagaaattcaccaatt 21637416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 6742620 - 6742569
Alignment:
Q  40 tcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa 91  Q
    ||||||||||| ||||||||||||||||| |||||||||  |||||||||||    
T  6742620 tcaaatgcaatggaaagatagattgtgtatttctctctacgagtcatcacaa 6742569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 40382781 - 40382828
Alignment:
Q  32 gttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctag 79  Q
    |||||| |||||||||||| |||||||| |||||||||||||||||||    
T  40382781 gttctaggtcaaatgcaatggaaagataaattgtgtaattctctctag 40382828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 280
Target Start/End: Original strand, 4895928 - 4895963
Alignment:
Q  245 tcactatactctaatagtccccctcaaactcaaaat 280  Q
    |||| |||||||||||||||||||||||||||||||    
T  4895928 tcacaatactctaatagtccccctcaaactcaaaat 4895963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 4857513 - 4857475
Alignment:
Q  303 gtattaaattttacttttcatattttaagaaaagttagt 341  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  4857513 gtattaaatttgacttttcatattttaagataagttagt 4857475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 25506970 - 25507007
Alignment:
Q  40 tcaaatgcaatcgaaagatagattgtgtaattctctct 77  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  25506970 tcaaatgcaatggaaagatagattatgtaattctctct 25507007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 25017693 - 25017657
Alignment:
Q  303 gtattaaattttacttttcatattttaagaaaagtta 339  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  25017693 gtattaaatttgacttttcatattttaagacaagtta 25017657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 65 - 298
Target Start/End: Complemental strand, 25054390 - 25054166
Alignment:
Q  65 tgtaattctctctagaagtcatcac-aagatgcaaatgaataaaatatgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttgga 163  Q
    ||||||||||||| ||||||||||| ||||||||| |||||          |||| |||||||| |||||||||||||||||||||||||||||||||||    
T  25054390 tgtaattctctctggaagtcatcacaaagatgcaattgaat----------aaaagatgtgaaatagtacataggtgtagcttatttatagtgatttgga 25054301  T
Q  164 gtaactaaccctctaactaactttctactaggttacttgctctccaagttatctagattgcttgcactccaaattaccttctcactatactctaatagtc 263  Q
    ||||||||| | ||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  25054300 gtaactaactccctaactaacgttctactatgttacttgctctccaagttctctagattgcttgcacttcaagttaccttctcactatactctaatagtc 25054201  T
Q  264 cccctcaaactcaaaattagaaaaattcaccaatt 298  Q
    |||||| ||||||||||| |  |||||||||||||    
T  25054200 cccctcgaactcaaaattggggaaattcaccaatt 25054166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 28395557 - 28395732
Alignment:
Q  12 atgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaataaaata 110  Q
    |||||| |||| ||| | ||||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||  | |  ||| ||       
T  28395557 atgaatcaaaggattccatggttttaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcatcacaaagatagatagaaatgaa--- 28395653  T
Q  111 tgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctact 192  Q
        |||| || ||||| ||||||  ||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||    
T  28395654 ---taaaagatatgaaatagtacagtggtgtagcttatttatagtgatttggagtaaataactccctaactaattttctact 28395732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 4847692 - 4847865
Alignment:
Q  12 atgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaataaaata 110  Q
    ||||||||||| ||| | |||||||| |||||||| ||| |||||||||||| ||||||||||| |||||||||| || ||||  ||| || ||| || |    
T  4847692 atgaattaaaggattccatggttctaggtcaaatgtaatggaaagatagattttgtaattctctatagaagtcattaccaagaaacaattgtatataaga 4847791  T
Q  111 tgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctacta 193  Q
    |          |||| | ||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||    
T  4847792 ta---------gtgatatagtacatagatgtagcttatttatagtgacttggagtaactaactccctaactaactttccacta 4847865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 11809887 - 11809966
Alignment:
Q  139 tgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac-taggttacttgctctccaagttatct 217  Q
    ||||| || |||||||||| |||||||||||||| | |||||||||||||||| ||| | ||||||||||||||||||||    
T  11809887 tgtagtttgtttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctctccaagttatct 11809966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 18807582 - 18807634
Alignment:
Q  245 tcactatactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 298  Q
    ||||||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  18807582 tcactatactctaatagtccccctcaaactcaaaa-tgggaaaattcaccaatt 18807634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 11809948 - 11810005
Alignment:
Q  224 cttgcactccaaattaccttct-cactatactctaatagtccccctcaaactcaaaat 280  Q
    ||||| |||||| ||| ||||| ||||||||||||||||||||||||||||| |||||    
T  11809948 cttgctctccaagttatcttcttcactatactctaatagtccccctcaaacttaaaat 11810005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 6e-54; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 40 - 298
Target Start/End: Complemental strand, 4609183 - 4608947
Alignment:
Q  40 tcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa-gatgcaaatgaataaaatatgtgaaaatatgtgaaacagtacatagg 138  Q
    ||||||||||| ||||| || ||||| || |||||||||| ||||||||||| ||||||| ||||||||| || |||||           ||||||||||    
T  4609183 tcaaatgcaattgaaaggtaaattgtatagttctctctagcagtcatcacaaagatgcaattgaataaaagatatgaaat----------agtacatagg 4609094  T
Q  139 tgtagcttatttatagtgatttggagtaactaaccctctaactaactttctactaggttacttgctctccaagttatctagattgcttgcactccaaatt 238  Q
    ||||||||||||||||||||||||||||||||||            |||||| || ||||||||||||||||||||||||||||||||||||||||| ||    
T  4609093 tgtagcttatttatagtgatttggagtaactaac------------tttctattatgttacttgctctccaagttatctagattgcttgcactccaagtt 4609006  T
Q  239 accttctcactatactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 298  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||    
T  4609005 accttctcactatactctaatagtccccctcaaactcaaaa-tggaaaaattcactaatt 4608947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 123 - 254
Target Start/End: Complemental strand, 4602297 - 4602166
Alignment:
Q  123 tgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctactaggttacttgctctccaagttatctagatt 222  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| ||||    
T  4602297 tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctactatgttacttgctctccaagttatcttgatt 4602198  T
Q  223 gcttgcactccaaattaccttctcactatact 254  Q
    ||||||||| ||| ||||||||||||||||||    
T  4602197 gcttgcactacaagttaccttctcactatact 4602166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 28133826 - 28133653
Alignment:
Q  12 atgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa-gatgcaaatgaataaaata 110  Q
    |||||| |||| ||| | ||||||||  ||||||||||| ||||| || |||||||| |||||||||| ||||||||||| ||||||| ||||||||| |    
T  28133826 atgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtgtagttctctctaggagtcatcacaaagatgcaattgaataaaaga 28133727  T
Q  111 tgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctacta 193  Q
    ||         |||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  28133726 tg---------gtgaaatagtacataggtgtagcttatttatagtgacttggagtaactaactctctaactaactttctacta 28133653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 27682297 - 27682101
Alignment:
Q  12 atgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa-gatgcaaatgaataaaata 110  Q
    |||||| |||| ||| | ||||||||  ||||||||||| ||||| || |||||||| |||||||||| ||||||||||| ||||||||||||||||| |    
T  27682297 atgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtgtagttctctctaggagtcatcacaaagatgcaaatgaataaaaga 27682198  T
Q  111 tgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctactaggttacttgctctccaa 210  Q
    |||| ||           ||||||||||| | |||||||||| ||||||||||||||||||| | |||||||||||| |||||| || ||||||||||||    
T  27682197 tgtggaat----------agtacataggtcttgcttatttattgtgatttggagtaactaactccctaactaactttatactagattgcttgctctccaa 27682108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 41874616 - 41874542
Alignment:
Q  12 atgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcat 86  Q
    |||||| |||| ||| | |||||||| |||||||||||| |||||||||||| ||||||||||||||| ||||||    
T  41874616 atgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattttgtaattctctctaggagtcat 41874542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 26667002 - 26667111
Alignment:
Q  12 atgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagat-gcaaatgaataaaat 109  Q
    |||||| |||| ||||| ||||||||  |||||||| || ||||| ||||||||||||||||| |||  ||||||||| ||||| | ||||||||||||     
T  26667002 atgaatcaaaggatttcatggttctagatcaaatgcgatggaaaggtagattgtgtaattctccctaagagtcatcacaaagatagaaaatgaataaaag 26667101  T
Q  110 atgtgaaaat 119  Q
    || |||||||    
T  26667102 atatgaaaat 26667111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 27972595 - 27972530
Alignment:
Q  123 tgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac 191  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||| | |||  ||||||||||||||||||    
T  27972595 tgaaatagtacattggtgtagctgatttatagtgatttggagt-agtaa--ctctaactaactttctac 27972530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 27683855 - 27683891
Alignment:
Q  199 cttgctctccaagttatctagattgcttgcactccaa 235  Q
    |||||||||||||||||||||||||||||| ||||||    
T  27683855 cttgctctccaagttatctagattgcttgctctccaa 27683891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 26667218 - 26667268
Alignment:
Q  245 tcactatactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 298  Q
    |||||||||| ||||||||||||||||||||||   | ||||||||||||||||    
T  26667218 tcactatactgtaatagtccccctcaaactcaa---tggaaaaattcaccaatt 26667268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 20945322 - 20945284
Alignment:
Q  303 gtattaaattttacttttcatattttaagaaaagttagt 341  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  20945322 gtattaaatttgacttttcatattttaagacaagttagt 20945284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 39931965 - 39932003
Alignment:
Q  303 gtattaaattttacttttcatattttaagaaaagttagt 341  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  39931965 gtattaaattttagttttcatattttaagacaagttagt 39932003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 6e-42; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 45035261 - 45035064
Alignment:
Q  12 atgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa-gatgcaaatgaataaaata 110  Q
    |||||| |||| ||| | ||||||||  ||||||||||| |||||||||||||| || |||||||||| ||||||||||| ||||||||||||||||| |    
T  45035261 atgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtatagttctctctaggagtcatcacaaagatgcaaatgaataaaaga 45035162  T
Q  111 tgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac-taggttacttgctctcca 209  Q
    | ||||| |||         |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| | ||||||||||||    
T  45035161 tttgaaa-tat---------tacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctacatagataacttgctctcca 45035072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 30 - 217
Target Start/End: Complemental strand, 45033448 - 45033269
Alignment:
Q  30 tggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa-gatgcaaatgaataaaatatgtgaaaatatgtgaaac 128  Q
    ||||||||  ||||||||||| |||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||||||| || ||||                
T  45033448 tggttctagatcaaatgcaatggaaagatagattgtataattttctctaggagtcatcacaaagatgcaaatgaataaaagatatgaatt---------- 45033359  T
Q  129 agtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac-taggttacttgctctccaagttatct 217  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| | |||||||||||||||| ||| | ||||||||||||||||||||    
T  45033358 agtacataggtgtagcttatttacagtgatttggggtaactaactccctaactaactttctacatagataacttgctctccaagttatct 45033269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 1015719 - 1015655
Alignment:
Q  129 agtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctacta 193  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |  |||||||||||||||||    
T  1015719 agtacataggtgtggcttatttatagtgatttggagtaactaactccgtaactaactttctacta 1015655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 17308677 - 17308628
Alignment:
Q  144 cttatttatagtgatttggagtaactaaccctctaactaactttctacta 193  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  17308677 cttatttatagtgatttggagtaactaactccctaactaactttctacta 17308628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 33187280 - 33187329
Alignment:
Q  123 tgaaacagtacataggtgtagcttatttatagtgatttggagtaactaac 172  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  33187280 tgaaatagtacataggtgtagcttatttatagtgacttggagtaactaac 33187329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 45035082 - 45035008
Alignment:
Q  224 cttgcactccaaattaccttct-cactatactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 298  Q
    ||||| |||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||  |||||||||||||    
T  45035082 cttgctctccaagttatcttctacactatactctaatagtccccctcaaactcaaaa-tagggaaattcaccaatt 45035008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 1015827 - 1015762
Alignment:
Q  12 atgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctct 77  Q
    |||||| |||| ||| | ||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  1015827 atgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctct 1015762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 3372476 - 3372564
Alignment:
Q  32 gttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaataaaatatgtgaaaat 119  Q
    |||||| ||||||| |||| |||||||||||| | ||||||||||| | ||||| ||| |||||  ||||||||||||||| |||||||    
T  3372476 gttctaggtcaaatacaatggaaagatagattctataattctctctgggagtcaccacaaagataaaaatgaataaaatatatgaaaat 3372564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 4399574 - 4399621
Alignment:
Q  145 ttatttatagtgatttggagtaactaaccctctaactaactttctact 192  Q
    ||||||||||||| |||||||||||||| | |||||||||||||||||    
T  4399574 ttatttatagtgagttggagtaactaactccctaactaactttctact 4399621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 14007845 - 14007778
Alignment:
Q  12 atgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctag 79  Q
    |||||| |||| ||| | |||||||| |||||||||||| ||||||| |||||| |||||||||||||    
T  14007845 atgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatggattgtctaattctctctag 14007778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 17308600 - 17308562
Alignment:
Q  242 ttctcactatactctaatagtccccctcaaactcaaaat 280  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  17308600 ttctcactatattctaatagtccccctcaaactcaaaat 17308562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 17308765 - 17308719
Alignment:
Q  40 tcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcat 86  Q
    ||||||||||| ||||||||||||||||||||| |||||| ||||||    
T  17308765 tcaaatgcaatggaaagatagattgtgtaattcactctaggagtcat 17308719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 33187197 - 33187243
Alignment:
Q  32 gttctaagtcaaatgcaatcgaaagatagattgtgtaattctctcta 78  Q
    |||||| |||||||| ||| |||||||||||||||||||| ||||||    
T  33187197 gttctaggtcaaatgtaatggaaagatagattgtgtaattatctcta 33187243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 2131842 - 2131882
Alignment:
Q  303 gtattaaattttacttttcatattttaagaaaagttagttg 343  Q
    ||||||||||| ||||||||||||| |||| ||||||||||    
T  2131842 gtattaaatttgacttttcatatttaaagacaagttagttg 2131882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 965057 - 964953
Alignment:
Q  157 atttggagtaactaaccctctaactaactttctactaggttacttgctctccaagttatctagattgcttgcactccaaattaccttctcactatactct 256  Q
    |||||||||||||||| | ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  965057 atttggagtaactaactccctaactaactttctactatattacttgctctccaagttatctagattgcttgcactccaagttaccttctcactatactct 964958  T
Q  257 aatag 261  Q
    |||||    
T  964957 aatag 964953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 21464611 - 21464439
Alignment:
Q  19 aaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctct--agaagtcatcacaa--gatgcaaatgaataaaatatgtg 114  Q
    |||||||| | ||||||||  ||||||||||| ||||||||||||||||||||||||||  || |||||| ||||  |  | |||||||| ||           
T  21464611 aaagaattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctctaggagtcattacaaaggtagaaaatgaatgaat------ 21464518  T
Q  115 aaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctacta 193  Q
    |||| | || ||| |||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  21464517 aaaagaagtaaaatagtacataagtgtagcttatttacagtgatttggagtaactaaccccctaactaactttctacta 21464439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 29924716 - 29924662
Alignment:
Q  32 gttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcat 86  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||| ||||||    
T  29924716 gttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcat 29924662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 21631449 - 21631502
Alignment:
Q  244 ctcactatactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 298  Q
    |||||||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  21631449 ctcactatactctaatagtccccctcaaactcaaaa-tgggaaaattcaccaatt 21631502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 29924629 - 29924591
Alignment:
Q  134 ataggtgtagcttatttatagtgatttggagtaactaac 172  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  29924629 ataggtgtagcttatttatagtgacttggagtaactaac 29924591  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 260
Target Start/End: Original strand, 965049 - 965080
Alignment:
Q  229 actccaaattaccttctcactatactctaata 260  Q
    ||||||||||||||||||||||||||||||||    
T  965049 actccaaattaccttctcactatactctaata 965080  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 280
Target Start/End: Original strand, 9878367 - 9878402
Alignment:
Q  245 tcactatactctaatagtccccctcaaactcaaaat 280  Q
    |||||||||||||||||||| |||||||||||||||    
T  9878367 tcactatactctaatagtcctcctcaaactcaaaat 9878402  T

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Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 44782187 - 44782385
Alignment:
Q  12 atgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaataaaata 110  Q
    ||||||||||| ||| | |||||||| |||||||||||| |||||||||||||||||||||||||||| |||||| || ||||  ||| || |||||| |    
T  44782187 atgaattaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaagaaacaattgtataaaaga 44782286  T
Q  111 tgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac-taggttacttgctctcca 209  Q
    |     |||    |||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| ||| | |||||||||| |    
T  44782287 t-----aat----gaaatagtacataggtgtagcttatttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctctcta 44782377  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 9217597 - 9217499
Alignment:
Q  162 gagtaactaaccctctaactaactttctactaggttacttgctctccaagttatctagattgcttgcactccaaattaccttctcactatactctaata 260  Q
    |||||| |||| | ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9217597 gagtaattaactccctaactaactttctactagattacttgctctccaagatatctagattgcttgcactccaagttaccttctcactatactctaata 9217499  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 46679808 - 46679609
Alignment:
Q  12 atgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaataaaata 110  Q
    |||||| |||| ||| | ||||||||  ||||||||||| |||||||||||||||||||||||||||| |||||| || ||||  ||| || |||||| |    
T  46679808 atgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattaccaagaaacaattgtataaaaga 46679709  T
Q  111 tgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac--taggttacttgctctcc 208  Q
    ||          ||||  ||||||||||||||||||||||||||||| |||||||||||||| | |||||||| |||||||  ||| || ||||||| ||    
T  46679708 tga---------tgaagtagtacataggtgtagcttatttatagtgacttggagtaactaactccctaactaattttctactatagtttgcttgctcccc 46679618  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 35891592 - 35891631
Alignment:
Q  248 ctatactctaatagtccccctcaaactcaaaattagaaaa 287  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  35891592 ctatactctaatagtccccctcaaactctaaatgagaaaa 35891631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 32152242 - 32152280
Alignment:
Q  303 gtattaaattttacttttcatattttaagaaaagttagt 341  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  32152242 gtattaaatttgacttttcatattttaagataagttagt 32152280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 3284497 - 3284469
Alignment:
Q  250 atactctaatagtccccctcaaactcaaa 278  Q
    |||||||||||||||||||||||||||||    
T  3284497 atactctaatagtccccctcaaactcaaa 3284469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 9312024 - 9311996
Alignment:
Q  250 atactctaatagtccccctcaaactcaaa 278  Q
    |||||||||||||||||||||||||||||    
T  9312024 atactctaatagtccccctcaaactcaaa 9311996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 13145504 - 13145540
Alignment:
Q  305 attaaattttacttttcatattttaagaaaagttagt 341  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  13145504 attaaatttgacttttcatattttaagataagttagt 13145540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 35366003 - 35365967
Alignment:
Q  303 gtattaaattttacttttcatattttaagaaaagtta 339  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  35366003 gtattaaatttgacttttcatattttaagacaagtta 35365967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 30 - 217
Target Start/End: Original strand, 30634251 - 30634431
Alignment:
Q  30 tggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaataaaatatgtgaaaatatgtgaaac 128  Q
    ||||| || |||||||||||| |||||||||||| ||||||||||||||  |||||| || ||||  ||| || |||||| ||     |||    ||||     
T  30634251 tggttttaggtcaaatgcaatggaaagatagattctgtaattctctctatgagtcattactaagaaacaattgtataaaagat-----aat----gaaat 30634341  T
Q  129 agtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac-taggttacttgctctccaagttatct 217  Q
    ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| ||| | ||||||||||||||||||||    
T  30634342 agtacataggtgtagcttatttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctctccaagttatct 30634431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 1175113 - 1175018
Alignment:
Q  123 tgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctac-taggttacttgctctccaagttatct 217  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||||||| | | | |||||||||||| ||| | ||||||||||||||||||||    
T  1175113 tgaaatagtacataggtgtaacttatttatagtgacttggagtaactaactccccacctaactttctacatagataacttgctctccaagttatct 1175018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 35674859 - 35674920
Alignment:
Q  30 tggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcacaa 91  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  35674859 tggttctaagtcaaatgcaatggaaaggtagattgtgtaattctctctaggagtcatcacaa 35674920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 35673354 - 35673433
Alignment:
Q  30 tggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcaca-agatgcaaatgaataaaa 108  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||  | |||||||| ||||  ||||||||||||    
T  35673354 tggttctaagtcaaatgcaatggaaagatagattgtataattctctctatgaatcatcacagagatataaatgaataaaa 35673433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 1175036 - 1174962
Alignment:
Q  224 cttgcactccaaattaccttct-cactatactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 298  Q
    ||||| |||||| ||| ||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||||||    
T  1175036 cttgctctccaagttatcttcttcactatactctaatagtcctcctcaaactcaaaa-tggaaaaattcaccaatt 1174962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 280
Target Start/End: Original strand, 35673507 - 35673542
Alignment:
Q  245 tcactatactctaatagtccccctcaaactcaaaat 280  Q
    ||||||||||||| ||||||||||||||||||||||    
T  35673507 tcactatactctattagtccccctcaaactcaaaat 35673542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 1175219 - 1175145
Alignment:
Q  12 atgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcat 86  Q
    ||||||||||| |||   |||||||| |||||||| |||  ||||||||||||||||||| | ||||| ||||||    
T  1175219 atgaattaaaggattctatggttctaggtcaaatgtaatgaaaagatagattgtgtaattttttctaggagtcat 1175145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 36309617 - 36309579
Alignment:
Q  303 gtattaaattttacttttcatattttaagaaaagttagt 341  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  36309617 gtattaaatttgacttttcatattttaagacaagttagt 36309579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 24544732 - 24544662
Alignment:
Q  123 tgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctacta 193  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  24544732 tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctacta 24544662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 172
Target Start/End: Complemental strand, 15689140 - 15688988
Alignment:
Q  12 atgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaataaaata 110  Q
    |||||| |||| ||| | || ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||  ||||||||||        
T  15689140 atgaatcaaaggattccatgattctaggtcaaatgcaatggaaagatagattgtgtaattctctctag-agtcatcacaaagatagaaatgaataa---- 15689046  T
Q  111 tgtgaaaatatgtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaac 172  Q
        |||| ||   ||| |||||||||| |||||||||||||||||||||||||||||||||    
T  15689045 ----aaaagatagaaaatagtacataggagtagcttatttatagtgatttggagtaactaac 15688988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 34350440 - 34350511
Alignment:
Q  122 gtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaaccctctaactaactttctacta 193  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||||||||| | ||||||||||||||||||    
T  34350440 gtgaaatagtacataggtgtagtttatttataatgatttggagtaactaactccctaactaactttctacta 34350511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 9373602 - 9373679
Alignment:
Q  39 gtcaaatgcaatcgaaagatagattgtgtaattctctctagaagtcatcac-aagatgcaaatgaataaaatatgtga 115  Q
    |||||||||||| |||||||||| ||||||||| ||| ||| |||||| || |||||  |||||||||||| ||||||    
T  9373602 gtcaaatgcaatggaaagatagaatgtgtaattttctataggagtcataacaaagatataaatgaataaaagatgtga 9373679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 33869241 - 33869194
Alignment:
Q  250 atactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 298  Q
    |||||||||||||||||||||||||||||| | | ||||||||||||||    
T  33869241 atactctaatagtccccctcaaactcaaaa-tgggaaaattcaccaatt 33869194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 250 - 280
Target Start/End: Complemental strand, 15868387 - 15868357
Alignment:
Q  250 atactctaatagtccccctcaaactcaaaat 280  Q
    |||||||||||||||||||||||||||||||    
T  15868387 atactctaatagtccccctcaaactcaaaat 15868357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 3043 - 3093
Alignment:
Q  122 gtgaaacagtacataggtgtagcttatttatagtgatttggagtaactaac 172  Q
    |||||| ||||||| |||||||| |||||||||||| ||||||||||||||    
T  3043 gtgaaatagtacatcggtgtagcatatttatagtgacttggagtaactaac 3093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 9188 - 9240
Alignment:
Q  245 tcactatactctaatagtccccctcaaactcaaaattagaaaaattcaccaatt 298  Q
    |||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  9188 tcactatactctaatagtcctcctcaaactcaagatt-gagaaattcaccaatt 9240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 250 - 280
Target Start/End: Complemental strand, 6221 - 6191
Alignment:
Q  250 atactctaatagtccccctcaaactcaaaat 280  Q
    |||||||||||||||||||||||||||||||    
T  6221 atactctaatagtccccctcaaactcaaaat 6191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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