View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7348_low_2 (Length: 455)
Name: NF7348_low_2
Description: NF7348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7348_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 239 - 437
Target Start/End: Complemental strand, 47287331 - 47287133
Alignment:
| Q |
239 |
aataagaaaatgtattttgatgcacacaccaaatagaaaatagtctagacttttgttgggcatgaattcataaatgagcatcttttcttcaccatccaag |
338 |
Q |
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| T |
47287331 |
aataagaaaatgtattttgatgcacacaccaaatagaaaatagtctagacttttgttgggcatgaattcataaatgagcatcttttcttcaccatccaag |
47287232 |
T |
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| Q |
339 |
caaaacccaagaatcctaacaagatttctgtgttgtagtttggctaccaaaacgacctcattcttgaattcttctatgccttgaccagaacttcttgat |
437 |
Q |
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| T |
47287231 |
caaaacccaagaatcctaacaagatttctgtgttgtagtttggctaccaaaacgacctcattcttgaattcttctatgccttgaccagaacttcttgat |
47287133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 47287547 - 47287347
Alignment:
| Q |
1 |
cgtcttggccaatttatctgatgtgctttttcaggatctgcatattatcataaaattaaagcaacttaaatttaacaaacaaattggtttctagcatgtt |
100 |
Q |
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| T |
47287547 |
cgtcttggccaatttatctgatgtgctttttcaggatctgcgtattatcataaaattaaagcaacttaaatttaacaaacaaattggtttctagcatgtt |
47287448 |
T |
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| Q |
101 |
tggatgttttttgggaaggtcccagcagatagaactataccttttatcactaaaggtatagttcattaatatggaaacattctcaacttacaatgaaaca |
200 |
Q |
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| T |
47287447 |
tggatgttttttgggaaggtcccagcagatagaactataccttttatcactaaaggtatagttcattaatatggaaacattctcaacttacaatgaaaca |
47287348 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
47287347 |
t |
47287347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 378
Target Start/End: Complemental strand, 47636300 - 47636179
Alignment:
| Q |
257 |
gatgcacacaccaaatagaaaatagtctagacttttgttgggcatgaattcataaatgagcatcttttcttcaccatccaagcaaaacccaagaatccta |
356 |
Q |
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||||||| |||||| |||| |||||| || |||||||||| || |||||||||| || ||||||||||| | ||||||||||| || |||| |||| |
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| T |
47636300 |
gatgcacctaccaaaaagaatatagtcgaggcttttgttggccacaaattcataaacaagtatcttttcttctctttccaagcaaaatcctagaagccta |
47636201 |
T |
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| Q |
357 |
acaagatttctgtgttgtagtt |
378 |
Q |
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| T |
47636200 |
gctaaatttctatgttgaagtt |
47636179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 36438135 - 36438205
Alignment:
| Q |
351 |
atcctaacaagatttctgtgttgtagtttggctaccaaaacgacctcattcttgaattcttctatgccttg |
421 |
Q |
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| T |
36438135 |
atcctcacaagatttctgtgttgaagttttgaaatcaaaacaacctcatttttaaactcttctatgccttg |
36438205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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