View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7348_low_3 (Length: 441)
Name: NF7348_low_3
Description: NF7348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7348_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 380
Target Start/End: Complemental strand, 6956825 - 6956441
Alignment:
| Q |
10 |
gagatggacatcaaactcggcaaagatgttgatgagaatctagttgactctacattgtataagaaaattataggctcactgagatacttaagcaatacaa |
109 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6956825 |
gagatgggaatcaaactcggcaaagatgttgatgagaatctagttgactctacattgtataagaaaattataggctcactgagatacttaagcaatacaa |
6956726 |
T |
|
| Q |
110 |
acctaattttacattccttgtgggataagtaagcaaattcatgaagaaaaaagtacatttgggtaattattcatgtttagtgaagcttcaatctcatagt |
209 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6956725 |
acctaatttgacattccttgtgggataagtaagcaaattcatgaagaaaaaagtacatttgggtaattattcacgtttagtgaagcttcaatctcatagt |
6956626 |
T |
|
| Q |
210 |
gctcaaagaaacaaggaatagttgcattatcctcgtg--------------tgtagcaacctcatttgcagcatgtcaaggacttaaattaaaatgttgc |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6956625 |
gctcaaagaaacaaggaatagttgcattatcctcgtgtgttaagttgagtatgtagcaacctcatttgcagcatgtcaaggacttaaattaaaatgttgc |
6956526 |
T |
|
| Q |
296 |
ttgaagatttgaagttaaatgaaactgaaagaatgagactattagtggataataagtcagctattgatttagcaaaacaccttgt |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6956525 |
ttgaagatttgaagttaaatgaaactgaaagaatgagactattagtggataataagtcagctattgatttagcaaaacaccttgt |
6956441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 19862473 - 19862420
Alignment:
| Q |
377 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19862473 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
19862420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 19867042 - 19866989
Alignment:
| Q |
377 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19867042 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
19866989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 19871943 - 19871890
Alignment:
| Q |
377 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19871943 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
19871890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 19876844 - 19876791
Alignment:
| Q |
377 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19876844 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
19876791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 36585725 - 36585672
Alignment:
| Q |
377 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36585725 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
36585672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 380 - 430
Target Start/End: Original strand, 48580658 - 48580708
Alignment:
| Q |
380 |
tgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48580658 |
tgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
48580708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 2064009 - 2064062
Alignment:
| Q |
377 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
430 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
2064009 |
ttgtgtgtacagacccatttaaactagcttttcttcttcggtttgcacgggttc |
2064062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University