View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7348_low_4 (Length: 283)
Name: NF7348_low_4
Description: NF7348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7348_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-153
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 36893120 - 36893400
Alignment:
| Q |
1 |
gccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggtcttataaaagacagtag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893120 |
gccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggtcttataaaagacagtag |
36893219 |
T |
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| Q |
101 |
cgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctgtacctggcggcacaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893220 |
cgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctgtacctggcggcacaact |
36893319 |
T |
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| Q |
201 |
gatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccatttcttcacttattggtctctgctactcc |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
36893320 |
gatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccatttcttcacttatcggtctctgcttctcc |
36893400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 36883117 - 36883392
Alignment:
| Q |
1 |
gccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggtcttataaaagacagtag |
100 |
Q |
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||||||| |||||||||||| || |||| ||||| || |||||||||||||| ||||||||||||| ||||||| || ||||||| |||| || || |
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| T |
36883117 |
gccttgtaccacaacacttctactttagaagcaacaacaagggcaaaacatcaagtgaaattttcaagacaacacacgaaaatcttatacaagagagcag |
36883216 |
T |
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| Q |
101 |
cgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctgtacctggcggcacaact |
200 |
Q |
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| T |
36883217 |
cagttggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtttcctttgccacagcaagccaagtacctggcggcacaacc |
36883316 |
T |
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| Q |
201 |
gatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccatttcttcacttattggtctctgct |
276 |
Q |
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||| |||| || || ||||||||||||||||||||||| || | ||||||||||||||||||||| ||||| |||| |
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| T |
36883317 |
gatgaaggcagtccagtattagaaggcaagcctgcatttgacgcctttgccatttcttcacttatcggtctttgct |
36883392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 247
Target Start/End: Original strand, 36903003 - 36903168
Alignment:
| Q |
79 |
aaggtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaag |
178 |
Q |
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||||||||||||||||||| | |||||||||||| ||||| | || |||||||| |||||| | || ||||| ||||||| |||||| ||||| |||| |
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| T |
36903003 |
aaggtcttataaaagacagcaatgaatggctaaaaaacacagcagattcctgctcggttgtagccgcgcttgtcgctggtgcttccttcaccacaacaag |
36903102 |
T |
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| Q |
179 |
cgctgtacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctt |
247 |
Q |
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|| ||||||||||| ||||||| | |||||||| |||||||||||||| ||||||||| ||||||| |
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| T |
36903103 |
tgcagtacctggcggaacaactg---agggtagaccagtattagaaggcaatcctgcattcaatgtctt |
36903168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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