View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7348_low_5 (Length: 263)
Name: NF7348_low_5
Description: NF7348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7348_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 17123539 - 17123772
Alignment:
| Q |
15 |
tatgtgaaaacaaaagccgtccgtagacattcttaaaatttaagaaacatgcaatgtagttgttccaataatgcctttagtagttacgtgtgaagnnnnn |
114 |
Q |
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| T |
17123539 |
tatgtgaaaacaaaaaccgtccttagacattcttaaaatttaagaaacatgcaatgtagttgttccaataatgcctttagtagttacgtgtgaaaaaaaa |
17123638 |
T |
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| Q |
115 |
nnnnng-tggaaatgggtcccatacattactctctccttttcctatctctctcaaaattctatataaagaagattgcagttttattccctccacttcaac |
213 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17123639 |
ataaaaatggaaatgggtcccatacattactctctcttcttcctatctctctcaaaattctatataaagaagattgcagttttattccctccacttcaac |
17123738 |
T |
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| Q |
214 |
tcacccatcaaaacaacacaccttaccttataac |
247 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
17123739 |
tcacccatcaaaacaacacaccttaccttataac |
17123772 |
T |
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