View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7348_low_6 (Length: 257)
Name: NF7348_low_6
Description: NF7348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7348_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 8696973 - 8696751
Alignment:
| Q |
15 |
aatattacttcacacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtattaataatttcttggtatcccatc |
114 |
Q |
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| T |
8696973 |
aatattacttcacacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtattaataatttcttggtatcccatc |
8696874 |
T |
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| Q |
115 |
aaggtgggcaatctttcttatggatctaatgaatatctattatacattctagatcatggtaatataatgcatgcttaattagcacaataacaccgatgct |
214 |
Q |
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| T |
8696873 |
aaggtgggcaatctttcttatggatctaatgaatatctattatatattctacat---------------catgcttaattagcacaataacaccgatgct |
8696789 |
T |
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| Q |
215 |
aatatcagatttttgaccgactaactcttattaatttt |
252 |
Q |
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| T |
8696788 |
aatatcagatttttgaccgactaactcttattaatttt |
8696751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 8677707 - 8677916
Alignment:
| Q |
15 |
aatattacttcacacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtattaataatttcttggtatcccatc |
114 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | ||||| |||| |
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| T |
8677707 |
aatattacttcatacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtataaatagtttcctcgtatctcatc |
8677806 |
T |
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| Q |
115 |
aaggtgggcaatctttcttatggatctaatgaatatctattatacattctagatcatggtaat-------ataatgcatgcttaattagcacaataacac |
207 |
Q |
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| T |
8677807 |
aaggtggacaatctttaatatggatctaatgattatctattat--attctacatcatggtactataatgcataatgcatgcttaattaacacaataacgc |
8677904 |
T |
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| Q |
208 |
cgatgctaatat |
219 |
Q |
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| T |
8677905 |
ggatgctaatat |
8677916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 8673613 - 8673655
Alignment:
| Q |
15 |
aatattacttcacacaccacttcactcaaataagaaaaacaag |
57 |
Q |
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| T |
8673613 |
aatattacttcacacaccacttcactcaaataaggaaaacaag |
8673655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 8692328 - 8692377
Alignment:
| Q |
15 |
aatattacttcacacaccacttcactcaaataagaaaaacaagcttctta |
64 |
Q |
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| T |
8692328 |
aatattacttcacacaccatttcactcaattaacgcaaacaagcttctta |
8692377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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