View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7348_low_7 (Length: 251)
Name: NF7348_low_7
Description: NF7348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7348_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 40804178 - 40804418
Alignment:
| Q |
9 |
acatcatcaagggattaaaacaaaagagaaacataattggtaatatatttgaatctcaacacagtcaaagaacatatttaaactcagtcattaatgctta |
108 |
Q |
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| T |
40804178 |
acatcatcaagggactaaaacaaaagagaaacataattggtaatatatttgaatctcaacacagtcaaagaacatatttaaactcagtcattaatgctta |
40804277 |
T |
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| Q |
109 |
atcaattattgactcaactcaagtttttaagaggaaagataagtgactggtcataaatcattggtgtttcaagcctaataaagggaacaatacatatcaa |
208 |
Q |
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| T |
40804278 |
atcaattattgactcaactcaagtttttaagaggaaagataagcgactggtcataaatcattggtgtttcaagcctaataaagggaacaatacatatcaa |
40804377 |
T |
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| Q |
209 |
tttcttgacaatgacgaccctttaatatctttgtttcttca |
249 |
Q |
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| T |
40804378 |
tttcttgacaatgacgaccctttaatatctttgtttcttca |
40804418 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 5115847 - 5115901
Alignment:
| Q |
168 |
attggtgtttcaagcctaataaagggaacaatacatatcaatttcttgacaatga |
222 |
Q |
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| T |
5115847 |
attggtgtttcaagcccaataacaggaacaagacatatcattttcttgacaatga |
5115901 |
T |
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