View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7348_low_8 (Length: 249)
Name: NF7348_low_8
Description: NF7348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7348_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 18633248 - 18633485
Alignment:
| Q |
1 |
aaaattatatctaactgctccaaattttccattaagaaaattaacaaaattttacctgccatcaagccattcaggaggtgaactaccagggaaccataat |
100 |
Q |
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| T |
18633248 |
aaaattatatctaactgctccaaattttccattaagaaaattaacaaaaatttacctgccatcaagccattcaggaggtgaactaccagggaaccataat |
18633347 |
T |
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| Q |
101 |
ggcctatctggaggaagtggttcacaaacatctgacactcctttctttgcatttctaattgtaagtgttcctcttctgctgttgcttaaccatgaggttg |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |
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| T |
18633348 |
ggcctatctggaggaagtggttcacatacatctgacactcctttctttgcatttctaattgtaagtcttcttcttctgctgctgcttaaccatgaggttg |
18633447 |
T |
|
| Q |
201 |
ttgatgttgttccttggtataaaaccttttgacatatt |
238 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |
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| T |
18633448 |
ttgatgttgttccttggtgtaaaaccttttgacatatt |
18633485 |
T |
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