View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7349_high_1 (Length: 628)
Name: NF7349_high_1
Description: NF7349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7349_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 18 - 612
Target Start/End: Complemental strand, 44210528 - 44209934
Alignment:
| Q |
18 |
catcataccaacccaaggcaagcagtttgttcgcactgtcaagaaacagggcattcttctaatgactgtccttcacagactcgacgctccaggaatcccc |
117 |
Q |
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| T |
44210528 |
catcataccaacccaaggcaagcagtttgttcgcactgtcaagaaacagggcattcttctaatgactgtccttcacagactcgacgctccaggaatcccc |
44210429 |
T |
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| Q |
118 |
aatatcctggaatgaaccaacaaaatagtaagatttctggaattttaaaatgccacagcagaatagacagcctagagaaataagaattgtaaattttgga |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44210428 |
aatatcctggaatgaaccaacaaaatggtaagatttctggaattttaaaatgccacagcagaatagacagcctagagaaataagaattgtaaattttgga |
44210329 |
T |
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| Q |
218 |
cattaggaaattagcaagcagtgagagtcaaccatgcagatcttggtcctgtagtttgtgatacacaaatgttaattttggattttgtagatgaattgac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44210328 |
cattaggaaattagcaagcagtgagagtcaaccatgcagatcttggtcctgtagtttgtgatacacaaatgttaattttggattttgtagatgaattgac |
44210229 |
T |
|
| Q |
318 |
atgtgataattgatggtcctagagatgaatctgccctatccaagcctcaccatgttattgatgtgctgatgattgtgaataatgctgcacaaagtgttga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44210228 |
atgtgataattgatggtcctagagatgaatctgccctatccaagcctcaccatgttattgatgtgctgatgattgtgaataatgctgcacaaagtgttga |
44210129 |
T |
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| Q |
418 |
aatttaattcaatgcaataacaactacgctttctcccactaggtgggttggcttcatgggtcaattgatgtcatacagtcttgacatgtattttggttca |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44210128 |
aatttaattcaatgcaataacaactacgctttctcccactaggtgggttggcttcatgggtcaattgatgtcatacagtcttgacatgtattttggttca |
44210029 |
T |
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| Q |
518 |
aagttgatcatttacacctaactcactcttattgattttccaatagttttccttggtttctgtctccgattgtttgactatcctccatttgatgt |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44210028 |
aagttgatcatttacacctaactcactcttattgattttccaatagttttccttggtttctgtctccgattgtttgactatcctccatttgatgt |
44209934 |
T |
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